Sequence of DPV Citrus tristeza virus
Citrus tristeza virus isolate T506 coat protein (CP) gene, complete cds.
ACC No: KC841781
Dated: 2013-05-29 | Length: 672 | CRC: 537654714
ID KC841781; SV 1; linear; genomic RNA; STD; VRL; 672 BP.
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AC KC841781;
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DT 29-MAY-2013 (Rel. 116, Created)
DT 29-MAY-2013 (Rel. 116, Last updated, Version 1)
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DE Citrus tristeza virus isolate T506 coat protein (CP) gene, complete cds.
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KW .
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OS Citrus tristeza virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae;
OC Closterovirus.
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RN [1]
RP 1-672
RA Wang J., Bozan O., Kwon S.-J., Dang T., Rucker T.L., Yokomi R.K., Lee R.K.,
RA Folimonova S.Y., Krueger R.R., Bash J.A., Greer G.D., Diaz J.M.,
RA Serna R.S., Vidalakis G.;
RT "Past and future of a century old Citrus tristeza virus collection. A
RT California citrus germplasm tale";
RL Unpublished.
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RN [2]
RP 1-672
RA Wang J., Bozan O., Kwon S.-J., Dang T., Rucker T.L., Yokomi R.K., Lee R.K.,
RA Folimonova S.Y., Krueger R.R., Bash J.A., Greer G.D., Diaz J.M.,
RA Serna R.S., Vidalakis G.;
RT ;
RL Submitted (28-MAR-2013) to the INSDC.
RL Department of Plant Pathology and Microbiology, University of California,
RL Riverside, 900 University Ave., Riverside, CA 92521, USA
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CC ##Assembly-Data-START##
CC Assembly Method :: DNA Dragon v. 1.5.3
CC Assembly Name :: CTV-CP
CC Coverage :: 3
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .672
FT /organism="Citrus tristeza virus"
FT /lab_host="Citrus sinensis"
FT /isolate="T506"
FT /mol_type="genomic RNA"
FT /country="USA:Ventura County, California"
FT /isolation_source="originally from Frost Lisbon lemon on
FT Citrus macrophylla rootstock"
FT /collected_by="Chester Roistacher"
FT /collection_date="1971"
FT /PCR_primers="fwd_name: CP-U-F-16054-16075, fwd_seq:
FT cwtgagcrctgctttaagggtc, rev_name: CP-U-R-16836-16814,
FT rev_seq: gatgaaactccaccatcccgata"
FT /note="T506 is maintained in planta at the Citrus Clonal
FT Protection Program (CCPP), University of California,
FT Riverside; acronym: CTV; genotype: T30"
FT /db_xref="taxon:12162"
FT gene 1. .672
FT /gene="CP"
FT CDS 1. .672
FT /codon_start=1
FT /gene="CP"
FT /product="coat protein"
FT /note="major coat protein"
FT /protein_id="AGM39378.1"
FT /translation="MDDETKKLKNKNQETKEGDVVVAAESSFGSVNLHIDPTLITMNDV
FT RQLSTQQNAALNRDLFLALKGKYPNLPDKDKDFHIAMMLYRLAVKSSSLQSDDDTTGIT
FT YTREGVEVDLSDKLWTDIVYNSKGIGNRTNALRVWGRTNDALYLAFCRQNRNLSYGGRP
FT LDAGIPAGYHYLCADFLTGAGLTDLECAVYIQAKEQLLKKRGADEVVVTNVRQLGKFNT
FT R"
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SQ Sequence 672 BP; 195 A; 122 C; 171 G; 184 T; 0 other;
kc841781 Length: 672 29-MAY-2013 Type: N Check: 3724 ..
1 atggacgacg aaacaaagaa attgaagaac aaaaaccagg aaacgaaaga
51 aggcgacgtt gttgttgctg ctgagtcttc tttcggttcc gtaaacttac
101 acatcgatcc gactctgata acgatgaacg atgtgcgtca gttgagtact
151 caacagaatg ctgctttgaa cagggactta tttcttgctc tgaaagggaa
201 gtatcctaac ttgcctgaca aagataagga ctttcacata gctatgatgt
251 tataccgatt ggcggttaag agttcatcat tgcaaagtga tgatgacacc
301 acgggcataa cgtacactcg ggagggtgtt gaagtagatt tgtctgacaa
351 actttggacc gacatcgtgt ataattctaa gggtattggt aaccgaacta
401 acgcccttcg agtctggggt agaactaacg atgctcttta cttagccttt
451 tgtagacaga accgcaattt gagttatggc ggacgtccgc tagatgcagg
501 gattccggct gggtatcatt atttgtgtgc agatttcttg accggagctg
551 gcttgactga tttagaatgt gctgtgtaca tacaagctaa agaacaattg
601 ttgaaaaagc gaggggctga tgaggttgta gttactaatg tcaggcagct
651 tgggaaattt aacacacgtt ga