Sequence of DPV Citrus tristeza virus
Citrus tristeza virus isolate T506 coat protein (CP) gene, complete cds.
ACC No: KC841781
Dated: 2013-05-29 | Length: 672 | CRC: 537654714
ID KC841781; SV 1; linear; genomic RNA; STD; VRL; 672 BP. XX AC KC841781; XX DT 29-MAY-2013 (Rel. 116, Created) DT 29-MAY-2013 (Rel. 116, Last updated, Version 1) XX DE Citrus tristeza virus isolate T506 coat protein (CP) gene, complete cds. XX KW . XX OS Citrus tristeza virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae; OC Closterovirus. XX RN [1] RP 1-672 RA Wang J., Bozan O., Kwon S.-J., Dang T., Rucker T.L., Yokomi R.K., Lee R.K., RA Folimonova S.Y., Krueger R.R., Bash J.A., Greer G.D., Diaz J.M., RA Serna R.S., Vidalakis G.; RT "Past and future of a century old Citrus tristeza virus collection. A RT California citrus germplasm tale"; RL Unpublished. XX RN [2] RP 1-672 RA Wang J., Bozan O., Kwon S.-J., Dang T., Rucker T.L., Yokomi R.K., Lee R.K., RA Folimonova S.Y., Krueger R.R., Bash J.A., Greer G.D., Diaz J.M., RA Serna R.S., Vidalakis G.; RT ; RL Submitted (28-MAR-2013) to the INSDC. RL Department of Plant Pathology and Microbiology, University of California, RL Riverside, 900 University Ave., Riverside, CA 92521, USA XX CC ##Assembly-Data-START## CC Assembly Method :: DNA Dragon v. 1.5.3 CC Assembly Name :: CTV-CP CC Coverage :: 3 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1. .672 FT /organism="Citrus tristeza virus" FT /lab_host="Citrus sinensis" FT /isolate="T506" FT /mol_type="genomic RNA" FT /country="USA:Ventura County, California" FT /isolation_source="originally from Frost Lisbon lemon on FT Citrus macrophylla rootstock" FT /collected_by="Chester Roistacher" FT /collection_date="1971" FT /PCR_primers="fwd_name: CP-U-F-16054-16075, fwd_seq: FT cwtgagcrctgctttaagggtc, rev_name: CP-U-R-16836-16814, FT rev_seq: gatgaaactccaccatcccgata" FT /note="T506 is maintained in planta at the Citrus Clonal FT Protection Program (CCPP), University of California, FT Riverside; acronym: CTV; genotype: T30" FT /db_xref="taxon:12162" FT gene 1. .672 FT /gene="CP" FT CDS 1. .672 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /note="major coat protein" FT /protein_id="AGM39378.1" FT /translation="MDDETKKLKNKNQETKEGDVVVAAESSFGSVNLHIDPTLITMNDV FT RQLSTQQNAALNRDLFLALKGKYPNLPDKDKDFHIAMMLYRLAVKSSSLQSDDDTTGIT FT YTREGVEVDLSDKLWTDIVYNSKGIGNRTNALRVWGRTNDALYLAFCRQNRNLSYGGRP FT LDAGIPAGYHYLCADFLTGAGLTDLECAVYIQAKEQLLKKRGADEVVVTNVRQLGKFNT FT R" XX SQ Sequence 672 BP; 195 A; 122 C; 171 G; 184 T; 0 other; kc841781 Length: 672 29-MAY-2013 Type: N Check: 3724 .. 1 atggacgacg aaacaaagaa attgaagaac aaaaaccagg aaacgaaaga 51 aggcgacgtt gttgttgctg ctgagtcttc tttcggttcc gtaaacttac 101 acatcgatcc gactctgata acgatgaacg atgtgcgtca gttgagtact 151 caacagaatg ctgctttgaa cagggactta tttcttgctc tgaaagggaa 201 gtatcctaac ttgcctgaca aagataagga ctttcacata gctatgatgt 251 tataccgatt ggcggttaag agttcatcat tgcaaagtga tgatgacacc 301 acgggcataa cgtacactcg ggagggtgtt gaagtagatt tgtctgacaa 351 actttggacc gacatcgtgt ataattctaa gggtattggt aaccgaacta 401 acgcccttcg agtctggggt agaactaacg atgctcttta cttagccttt 451 tgtagacaga accgcaattt gagttatggc ggacgtccgc tagatgcagg 501 gattccggct gggtatcatt atttgtgtgc agatttcttg accggagctg 551 gcttgactga tttagaatgt gctgtgtaca tacaagctaa agaacaattg 601 ttgaaaaagc gaggggctga tgaggttgta gttactaatg tcaggcagct 651 tgggaaattt aacacacgtt ga