Sequence of DPV Citrus tristeza virus
Citrus tristeza virus isolate T524 coat protein (CP) gene, complete cds.
ACC No: KC841797
Dated: 2013-05-29 | Length: 672 | CRC: -978850067
ID KC841797; SV 1; linear; genomic RNA; STD; VRL; 672 BP.
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AC KC841797;
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DT 29-MAY-2013 (Rel. 116, Created)
DT 29-MAY-2013 (Rel. 116, Last updated, Version 1)
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DE Citrus tristeza virus isolate T524 coat protein (CP) gene, complete cds.
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KW .
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OS Citrus tristeza virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae;
OC Closterovirus.
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RN [1]
RP 1-672
RA Wang J., Bozan O., Kwon S.-J., Dang T., Rucker T.L., Yokomi R.K., Lee R.K.,
RA Folimonova S.Y., Krueger R.R., Bash J.A., Greer G.D., Diaz J.M.,
RA Serna R.S., Vidalakis G.;
RT "Past and future of a century old Citrus tristeza virus collection. A
RT California citrus germplasm tale";
RL Unpublished.
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RN [2]
RP 1-672
RA Wang J., Bozan O., Kwon S.-J., Dang T., Rucker T.L., Yokomi R.K., Lee R.K.,
RA Folimonova S.Y., Krueger R.R., Bash J.A., Greer G.D., Diaz J.M.,
RA Serna R.S., Vidalakis G.;
RT ;
RL Submitted (28-MAR-2013) to the INSDC.
RL Department of Plant Pathology and Microbiology, University of California,
RL Riverside, 900 University Ave., Riverside, CA 92521, USA
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CC ##Assembly-Data-START##
CC Assembly Method :: DNA Dragon v. 1.5.3
CC Assembly Name :: CTV-CP
CC Coverage :: 3
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .672
FT /organism="Citrus tristeza virus"
FT /lab_host="Citrus sinensis"
FT /isolate="T524"
FT /mol_type="genomic RNA"
FT /country="USA:Ave 392 Road 168, Tulare County, California"
FT /isolation_source="originally from Lemon in Hatakeda grove
FT (Citrograph Aug. 1975, pg. 368)"
FT /collected_by="Dave Cordas"
FT /collection_date="1981"
FT /PCR_primers="fwd_name: CP-U-F-16054-16075, fwd_seq:
FT cwtgagcrctgctttaagggtc, rev_name: CP-U-R-16836-16814,
FT rev_seq: gatgaaactccaccatcccgata"
FT /note="T524 is maintained in planta at the Citrus Clonal
FT Protection Program (CCPP), University of California,
FT Riverside; acronym: CTV; genotype: VT"
FT /db_xref="taxon:12162"
FT gene 1. .672
FT /gene="CP"
FT CDS 1. .672
FT /codon_start=1
FT /gene="CP"
FT /product="coat protein"
FT /note="major coat protein"
FT /protein_id="AGM39394.1"
FT /translation="MDDETKKLKNKNKEKKEGDNVVAAESSFGSVNLHIDPTLIAMNDV
FT RQLGTQQNAALNRDLFLTLKGKYPNLSDKDKDFHLAMMLYRLAVKSSSLQSDDDTTGVT
FT YTREGVEVELSDKLWTDVVFNSKGIGNRANALRVWGRTNDALYLAFCRQNRNLSYGGRP
FT LDAGIPAGYHYLCADFLTGAGLTDLECAVYIQAKEQLLKKRGADEVVVTNVRQLGKFNT
FT R"
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SQ Sequence 672 BP; 194 A; 118 C; 175 G; 185 T; 0 other;
kc841797 Length: 672 29-MAY-2013 Type: N Check: 5415 ..
1 atggacgacg agacaaagaa attgaagaac aaaaacaagg aaaagaaaga
51 aggcgacaat gttgttgcag cagagtcttc tttcggttct gtaaacttac
101 acatcgatcc gactctgata gcaatgaacg atgtgcgtca gttgggtacc
151 caacagaatg ctgctttgaa cagagatttg tttcttacct tgaaagggaa
201 gtatcctaat ttgtctgaca aagacaagga ctttcactta gctatgatgt
251 tgtatcgttt agcagttaag agttcatcat tgcaaagtga tgatgacacc
301 acgggtgtga cgtacactcg ggagggtgtt gaagtggaat tgtctgacaa
351 actttggaca gacgtcgtgt ttaattctaa gggtattggt aaccgtgcta
401 acgcccttcg agtctggggt agaactaacg atgcccttta tttagctttt
451 tgtagacaga atcgcaattt gagttatggt ggacgtccgt tagatgcagg
501 gattccagcc gggtatcact acctgtgtgc tgatttcttg accggagctg
551 gcttgactga tttagaatgt gcagtgtaca tacaagctaa agagcaattg
601 ttaaagaagc gaggggctga cgaggtcgta gttaccaatg tcaggcagct
651 tgggaaattt aacacacgtt ga