Sequence of DPV Citrus tristeza virus
Citrus tristeza virus isolate T524 coat protein (CP) gene, complete cds.
ACC No: KC841797
Dated: 2013-05-29 | Length: 672 | CRC: -978850067
ID KC841797; SV 1; linear; genomic RNA; STD; VRL; 672 BP. XX AC KC841797; XX DT 29-MAY-2013 (Rel. 116, Created) DT 29-MAY-2013 (Rel. 116, Last updated, Version 1) XX DE Citrus tristeza virus isolate T524 coat protein (CP) gene, complete cds. XX KW . XX OS Citrus tristeza virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae; OC Closterovirus. XX RN [1] RP 1-672 RA Wang J., Bozan O., Kwon S.-J., Dang T., Rucker T.L., Yokomi R.K., Lee R.K., RA Folimonova S.Y., Krueger R.R., Bash J.A., Greer G.D., Diaz J.M., RA Serna R.S., Vidalakis G.; RT "Past and future of a century old Citrus tristeza virus collection. A RT California citrus germplasm tale"; RL Unpublished. XX RN [2] RP 1-672 RA Wang J., Bozan O., Kwon S.-J., Dang T., Rucker T.L., Yokomi R.K., Lee R.K., RA Folimonova S.Y., Krueger R.R., Bash J.A., Greer G.D., Diaz J.M., RA Serna R.S., Vidalakis G.; RT ; RL Submitted (28-MAR-2013) to the INSDC. RL Department of Plant Pathology and Microbiology, University of California, RL Riverside, 900 University Ave., Riverside, CA 92521, USA XX CC ##Assembly-Data-START## CC Assembly Method :: DNA Dragon v. 1.5.3 CC Assembly Name :: CTV-CP CC Coverage :: 3 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1. .672 FT /organism="Citrus tristeza virus" FT /lab_host="Citrus sinensis" FT /isolate="T524" FT /mol_type="genomic RNA" FT /country="USA:Ave 392 Road 168, Tulare County, California" FT /isolation_source="originally from Lemon in Hatakeda grove FT (Citrograph Aug. 1975, pg. 368)" FT /collected_by="Dave Cordas" FT /collection_date="1981" FT /PCR_primers="fwd_name: CP-U-F-16054-16075, fwd_seq: FT cwtgagcrctgctttaagggtc, rev_name: CP-U-R-16836-16814, FT rev_seq: gatgaaactccaccatcccgata" FT /note="T524 is maintained in planta at the Citrus Clonal FT Protection Program (CCPP), University of California, FT Riverside; acronym: CTV; genotype: VT" FT /db_xref="taxon:12162" FT gene 1. .672 FT /gene="CP" FT CDS 1. .672 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /note="major coat protein" FT /protein_id="AGM39394.1" FT /translation="MDDETKKLKNKNKEKKEGDNVVAAESSFGSVNLHIDPTLIAMNDV FT RQLGTQQNAALNRDLFLTLKGKYPNLSDKDKDFHLAMMLYRLAVKSSSLQSDDDTTGVT FT YTREGVEVELSDKLWTDVVFNSKGIGNRANALRVWGRTNDALYLAFCRQNRNLSYGGRP FT LDAGIPAGYHYLCADFLTGAGLTDLECAVYIQAKEQLLKKRGADEVVVTNVRQLGKFNT FT R" XX SQ Sequence 672 BP; 194 A; 118 C; 175 G; 185 T; 0 other; kc841797 Length: 672 29-MAY-2013 Type: N Check: 5415 .. 1 atggacgacg agacaaagaa attgaagaac aaaaacaagg aaaagaaaga 51 aggcgacaat gttgttgcag cagagtcttc tttcggttct gtaaacttac 101 acatcgatcc gactctgata gcaatgaacg atgtgcgtca gttgggtacc 151 caacagaatg ctgctttgaa cagagatttg tttcttacct tgaaagggaa 201 gtatcctaat ttgtctgaca aagacaagga ctttcactta gctatgatgt 251 tgtatcgttt agcagttaag agttcatcat tgcaaagtga tgatgacacc 301 acgggtgtga cgtacactcg ggagggtgtt gaagtggaat tgtctgacaa 351 actttggaca gacgtcgtgt ttaattctaa gggtattggt aaccgtgcta 401 acgcccttcg agtctggggt agaactaacg atgcccttta tttagctttt 451 tgtagacaga atcgcaattt gagttatggt ggacgtccgt tagatgcagg 501 gattccagcc gggtatcact acctgtgtgc tgatttcttg accggagctg 551 gcttgactga tttagaatgt gcagtgtaca tacaagctaa agagcaattg 601 ttaaagaagc gaggggctga cgaggtcgta gttaccaatg tcaggcagct 651 tgggaaattt aacacacgtt ga