Sequence of DPV Citrus tristeza virus
Citrus tristeza virus isolate SY555 coat protein (CP) gene, complete cds.
ACC No: KC841800
Dated: 2013-05-29 | Length: 672 | CRC: 534855695
ID KC841800; SV 1; linear; genomic RNA; STD; VRL; 672 BP. XX AC KC841800; XX DT 29-MAY-2013 (Rel. 116, Created) DT 29-MAY-2013 (Rel. 116, Last updated, Version 1) XX DE Citrus tristeza virus isolate SY555 coat protein (CP) gene, complete cds. XX KW . XX OS Citrus tristeza virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae; OC Closterovirus. XX RN [1] RP 1-672 RA Wang J., Bozan O., Kwon S.-J., Dang T., Rucker T.L., Yokomi R.K., Lee R.K., RA Folimonova S.Y., Krueger R.R., Bash J.A., Greer G.D., Diaz J.M., RA Serna R.S., Vidalakis G.; RT "Past and future of a century old Citrus tristeza virus collection. A RT California citrus germplasm tale"; RL Unpublished. XX RN [2] RP 1-672 RA Wang J., Bozan O., Kwon S.-J., Dang T., Rucker T.L., Yokomi R.K., Lee R.K., RA Folimonova S.Y., Krueger R.R., Bash J.A., Greer G.D., Diaz J.M., RA Serna R.S., Vidalakis G.; RT ; RL Submitted (28-MAR-2013) to the INSDC. RL Department of Plant Pathology and Microbiology, University of California, RL Riverside, 900 University Ave., Riverside, CA 92521, USA XX CC ##Assembly-Data-START## CC Assembly Method :: DNA Dragon v. 1.5.3 CC Assembly Name :: CTV-CP CC Coverage :: 3 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1. .672 FT /organism="Citrus tristeza virus" FT /lab_host="Citrus sinensis" FT /isolate="SY555" FT /mol_type="genomic RNA" FT /country="USA:Riverside, California" FT /isolation_source="originally from Tahitian Pummelo in FT Riverside Citrus Research Center and Agricultural FT Experiment Station" FT /collected_by="Chester Roistacher" FT /collection_date="1971" FT /PCR_primers="fwd_name: CP-U-F-16054-16075, fwd_seq: FT cwtgagcrctgctttaagggtc, rev_name: CP-U-R-16836-16814, FT rev_seq: gatgaaactccaccatcccgata" FT /note="SY555 is maintained in planta at the Citrus Clonal FT Protection Program (CCPP), University of California, FT Riverside; acronym: CTV; genotype: VT" FT /db_xref="taxon:12162" FT gene 1. .672 FT /gene="CP" FT CDS 1. .672 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /note="major coat protein" FT /protein_id="AGM39397.1" FT /translation="MDDETKKLKNKNKETKEGDDVVAAESSFGSVNLHIDPTLIAMNDV FT RQLGTQQNAALNRDLFLTLKGKYPNLPDKDKDFHLAMMLYRLAVKSSSLQSDDDTTGVT FT YTREGVEVELSDKLWTDIVFNSKGIGNRTNALRVWGRTNDALYLAFCRQNRNLSYGGRP FT LDAGIPAGYHYLCADFLTGAGLTDLECAVYIQAKEQLLKKRGADEVVVTNVRQLGKFNT FT R" XX SQ Sequence 672 BP; 199 A; 123 C; 170 G; 180 T; 0 other; kc841800 Length: 672 29-MAY-2013 Type: N Check: 3116 .. 1 atggacgacg aaacaaagaa attgaagaac aaaaacaagg aaacgaaaga 51 aggcgacgat gttgttgcag ctgagtcttc tttcggttcc gtaaacttac 101 acatcgatcc gactctgata gcgatgaacg atgtgcgtca gttgggtacc 151 caacagaatg ctgctttgaa tagagatttg tttcttacct tgaaagggaa 201 gtatcctaac ttacctgaca aagataaaga ctttcactta gctatgatgt 251 tatatcgttt agcagttaag agttcatcat tacaaagcga cgatgacacc 301 acgggtgtga cgtacactcg ggaaggtgtt gaagtggaat tgtctgacaa 351 actttggaca gacatcgtgt ttaactctaa gggtattggt aaccgtacta 401 acgcccttcg agtctggggt agaactaacg atgcccttta tttggctttt 451 tgtagacaga atcgcaactt gagttatggt ggacgtccgt tagatgcagg 501 aattccagcc gggtatcact acctgtgtgc agatttcttg accggagctg 551 gattgactga tttagaatgt gcagtgtaca tacaagctaa agagcaattg 601 ttgaagaagc gaggggctga tgaggtcgta gttaccaatg tcaggcagct 651 tgggaaattc aacacacgtt ga