Sequence of DPV Citrus tristeza virus
Citrus tristeza virus isolate SY555 coat protein (CP) gene, complete cds.
ACC No: KC841800
Dated: 2013-05-29 | Length: 672 | CRC: 534855695
ID KC841800; SV 1; linear; genomic RNA; STD; VRL; 672 BP.
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AC KC841800;
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DT 29-MAY-2013 (Rel. 116, Created)
DT 29-MAY-2013 (Rel. 116, Last updated, Version 1)
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DE Citrus tristeza virus isolate SY555 coat protein (CP) gene, complete cds.
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KW .
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OS Citrus tristeza virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae;
OC Closterovirus.
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RN [1]
RP 1-672
RA Wang J., Bozan O., Kwon S.-J., Dang T., Rucker T.L., Yokomi R.K., Lee R.K.,
RA Folimonova S.Y., Krueger R.R., Bash J.A., Greer G.D., Diaz J.M.,
RA Serna R.S., Vidalakis G.;
RT "Past and future of a century old Citrus tristeza virus collection. A
RT California citrus germplasm tale";
RL Unpublished.
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RN [2]
RP 1-672
RA Wang J., Bozan O., Kwon S.-J., Dang T., Rucker T.L., Yokomi R.K., Lee R.K.,
RA Folimonova S.Y., Krueger R.R., Bash J.A., Greer G.D., Diaz J.M.,
RA Serna R.S., Vidalakis G.;
RT ;
RL Submitted (28-MAR-2013) to the INSDC.
RL Department of Plant Pathology and Microbiology, University of California,
RL Riverside, 900 University Ave., Riverside, CA 92521, USA
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CC ##Assembly-Data-START##
CC Assembly Method :: DNA Dragon v. 1.5.3
CC Assembly Name :: CTV-CP
CC Coverage :: 3
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .672
FT /organism="Citrus tristeza virus"
FT /lab_host="Citrus sinensis"
FT /isolate="SY555"
FT /mol_type="genomic RNA"
FT /country="USA:Riverside, California"
FT /isolation_source="originally from Tahitian Pummelo in
FT Riverside Citrus Research Center and Agricultural
FT Experiment Station"
FT /collected_by="Chester Roistacher"
FT /collection_date="1971"
FT /PCR_primers="fwd_name: CP-U-F-16054-16075, fwd_seq:
FT cwtgagcrctgctttaagggtc, rev_name: CP-U-R-16836-16814,
FT rev_seq: gatgaaactccaccatcccgata"
FT /note="SY555 is maintained in planta at the Citrus Clonal
FT Protection Program (CCPP), University of California,
FT Riverside; acronym: CTV; genotype: VT"
FT /db_xref="taxon:12162"
FT gene 1. .672
FT /gene="CP"
FT CDS 1. .672
FT /codon_start=1
FT /gene="CP"
FT /product="coat protein"
FT /note="major coat protein"
FT /protein_id="AGM39397.1"
FT /translation="MDDETKKLKNKNKETKEGDDVVAAESSFGSVNLHIDPTLIAMNDV
FT RQLGTQQNAALNRDLFLTLKGKYPNLPDKDKDFHLAMMLYRLAVKSSSLQSDDDTTGVT
FT YTREGVEVELSDKLWTDIVFNSKGIGNRTNALRVWGRTNDALYLAFCRQNRNLSYGGRP
FT LDAGIPAGYHYLCADFLTGAGLTDLECAVYIQAKEQLLKKRGADEVVVTNVRQLGKFNT
FT R"
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SQ Sequence 672 BP; 199 A; 123 C; 170 G; 180 T; 0 other;
kc841800 Length: 672 29-MAY-2013 Type: N Check: 3116 ..
1 atggacgacg aaacaaagaa attgaagaac aaaaacaagg aaacgaaaga
51 aggcgacgat gttgttgcag ctgagtcttc tttcggttcc gtaaacttac
101 acatcgatcc gactctgata gcgatgaacg atgtgcgtca gttgggtacc
151 caacagaatg ctgctttgaa tagagatttg tttcttacct tgaaagggaa
201 gtatcctaac ttacctgaca aagataaaga ctttcactta gctatgatgt
251 tatatcgttt agcagttaag agttcatcat tacaaagcga cgatgacacc
301 acgggtgtga cgtacactcg ggaaggtgtt gaagtggaat tgtctgacaa
351 actttggaca gacatcgtgt ttaactctaa gggtattggt aaccgtacta
401 acgcccttcg agtctggggt agaactaacg atgcccttta tttggctttt
451 tgtagacaga atcgcaactt gagttatggt ggacgtccgt tagatgcagg
501 aattccagcc gggtatcact acctgtgtgc agatttcttg accggagctg
551 gattgactga tttagaatgt gcagtgtaca tacaagctaa agagcaattg
601 ttgaagaagc gaggggctga tgaggtcgta gttaccaatg tcaggcagct
651 tgggaaattc aacacacgtt ga