Sequence of DPV Citrus tristeza virus
Citrus tristeza virus isolate SY557 coat protein (CP) gene, complete cds.
ACC No: KC841802
Dated: 2013-05-29 | Length: 672 | CRC: 500159569
ID KC841802; SV 1; linear; genomic RNA; STD; VRL; 672 BP. XX AC KC841802; XX DT 29-MAY-2013 (Rel. 116, Created) DT 29-MAY-2013 (Rel. 116, Last updated, Version 1) XX DE Citrus tristeza virus isolate SY557 coat protein (CP) gene, complete cds. XX KW . XX OS Citrus tristeza virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae; OC Closterovirus. XX RN [1] RP 1-672 RA Wang J., Bozan O., Kwon S.-J., Dang T., Rucker T.L., Yokomi R.K., Lee R.K., RA Folimonova S.Y., Krueger R.R., Bash J.A., Greer G.D., Diaz J.M., RA Serna R.S., Vidalakis G.; RT "Past and future of a century old Citrus tristeza virus collection. A RT California citrus germplasm tale"; RL Unpublished. XX RN [2] RP 1-672 RA Wang J., Bozan O., Kwon S.-J., Dang T., Rucker T.L., Yokomi R.K., Lee R.K., RA Folimonova S.Y., Krueger R.R., Bash J.A., Greer G.D., Diaz J.M., RA Serna R.S., Vidalakis G.; RT ; RL Submitted (28-MAR-2013) to the INSDC. RL Department of Plant Pathology and Microbiology, University of California, RL Riverside, 900 University Ave., Riverside, CA 92521, USA XX CC ##Assembly-Data-START## CC Assembly Method :: DNA Dragon v. 1.5.3 CC Assembly Name :: CTV-CP CC Coverage :: 3 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1. .672 FT /organism="Citrus tristeza virus" FT /lab_host="Citrus sinensis" FT /isolate="SY557" FT /mol_type="genomic RNA" FT /country="USA:East Hawaii Branch Station, Waiakea, Hawaii" FT /isolation_source="originally from Navel Orange on FT Trifoliate rootstock in Warner Ranch" FT /collected_by="Edmond C. Calavan" FT /collection_date="1971" FT /PCR_primers="fwd_name: CP-U-F-16054-16075, fwd_seq: FT cwtgagcrctgctttaagggtc, rev_name: CP-U-R-16836-16814, FT rev_seq: gatgaaactccaccatcccgata" FT /note="SY557 is maintained in planta at the Citrus Clonal FT Protection Program (CCPP), University of California, FT Riverside; acronym: CTV; genotype: VT" FT /db_xref="taxon:12162" FT gene 1. .672 FT /gene="CP" FT CDS 1. .672 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /note="major coat protein" FT /protein_id="AGM39399.1" FT /translation="MDDETKKLKNKNKEAKDGDDVVAAESSFGSINLHIDPTLIAMNDV FT RQLGTQQNAALNRDLFLTLKGKYPNLSDKDKDFHIAMMLYRLAVKSSSLQSDDDTTGIT FT YTREGVEVDLSDKLWTDVVFNSKGIGNRANALRVWGRTNDALYLAFCRQNRNLSYGGRP FT LDAGIPAGYHYLCADFLTGAGLTDLECAVYIQAKEQLLKKRGADEVVVTNVRQLGKFNT FT R" XX SQ Sequence 672 BP; 188 A; 121 C; 178 G; 185 T; 0 other; kc841802 Length: 672 29-MAY-2013 Type: N Check: 5920 .. 1 atggacgacg agacaaagaa attgaagaac aaaaacaagg aagcgaaaga 51 tggcgacgat gttgttgcag cggagtcttc tttcggttct ataaacttac 101 acatcgatcc gactctgata gcgatgaacg atgtgcgtca gttgggtacc 151 caacagaatg ccgctttaaa cagagatttg tttcttactt tgaaagggaa 201 gtatcctaat ttgtctgata aggataagga ctttcacata gctatgatgt 251 tgtatcgttt agcggttaag agttcatcat tacaaagtga tgacgacact 301 acgggtataa cgtacactcg ggagggcgtc gaagtggatt tgtctgacaa 351 actttggact gacgtcgtgt ttaattctaa gggtatcggt aaccgtgcta 401 acgcccttcg agtctggggt aggactaacg atgcccttta tttagccttt 451 tgtagacaga atcgcaattt gagttatggc ggacgtccgc tagatgcagg 501 gattccggcc gggtatcatt acctgtgtgc agatttcttg accggagctg 551 gcttgactga tttagagtgt gctgtgtaca tacaagctaa agaacaattg 601 ttgaagaagc gaggggctga tgaagtcgta gttaccaatg tcaggcagct 651 tgggaaattt aacacacgtt ga