Sequence of DPV Citrus tristeza virus
Citrus tristeza virus isolate SY565 coat protein (CP) gene, complete cds.
ACC No: KC841803
Dated: 2013-05-29 | Length: 672 | CRC: -101453477
ID KC841803; SV 1; linear; genomic RNA; STD; VRL; 672 BP.
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AC KC841803;
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DT 29-MAY-2013 (Rel. 116, Created)
DT 29-MAY-2013 (Rel. 116, Last updated, Version 1)
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DE Citrus tristeza virus isolate SY565 coat protein (CP) gene, complete cds.
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KW .
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OS Citrus tristeza virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae;
OC Closterovirus.
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RN [1]
RP 1-672
RA Wang J., Bozan O., Kwon S.-J., Dang T., Rucker T.L., Yokomi R.K., Lee R.K.,
RA Folimonova S.Y., Krueger R.R., Bash J.A., Greer G.D., Diaz J.M.,
RA Serna R.S., Vidalakis G.;
RT "Past and future of a century old Citrus tristeza virus collection. A
RT California citrus germplasm tale";
RL Unpublished.
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RN [2]
RP 1-672
RA Wang J., Bozan O., Kwon S.-J., Dang T., Rucker T.L., Yokomi R.K., Lee R.K.,
RA Folimonova S.Y., Krueger R.R., Bash J.A., Greer G.D., Diaz J.M.,
RA Serna R.S., Vidalakis G.;
RT ;
RL Submitted (28-MAR-2013) to the INSDC.
RL Department of Plant Pathology and Microbiology, University of California,
RL Riverside, 900 University Ave., Riverside, CA 92521, USA
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CC ##Assembly-Data-START##
CC Assembly Method :: DNA Dragon v. 1.5.3
CC Assembly Name :: CTV-CP
CC Coverage :: 3
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .672
FT /organism="Citrus tristeza virus"
FT /lab_host="Citrus sinensis"
FT /isolate="SY565"
FT /mol_type="genomic RNA"
FT /country="Australia"
FT /isolation_source="originally from Parson's Special
FT Mandarin in Riverside Citrus Research Center and
FT Agricultural Experiment Station (CRC 300). CRC 300 was
FT received from Dr. Fawcett's Florida collection (#106) in
FT 1914"
FT /collected_by="Chester Roistacher"
FT /collection_date="1978"
FT /PCR_primers="fwd_name: CP-U-F-16054-16075, fwd_seq:
FT cwtgagcrctgctttaagggtc, rev_name: CP-U-R-16836-16814,
FT rev_seq: gatgaaactccaccatcccgata"
FT /note="SY565 is maintained in planta at the Citrus Clonal
FT Protection Program (CCPP), University of California,
FT Riverside; acronym: CTV; genotype: VT"
FT /db_xref="taxon:12162"
FT gene 1. .672
FT /gene="CP"
FT CDS 1. .672
FT /codon_start=1
FT /gene="CP"
FT /product="coat protein"
FT /note="major coat protein"
FT /protein_id="AGM39400.1"
FT /translation="MDDETKKLKNKNKETKEGDDVVAAESSFGSANLHIDPTLITMNDV
FT RQLGTQQNAALNRDLFLTLKGKYPSLSDKDKDFHIAMMLYRLAVKSSSLQSDDDTTGIT
FT YTREGVEVDLSDKLWTDVVFNSKGIGNRTNALRVWGRTNDALYLAFCRQNRNLSYGGRP
FT LDAGIPAGYHYLCADFLTGAGLTDLECAVYIQAKEQLLKKRGADEVVVTNVRQLGKFNT
FT R"
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SQ Sequence 672 BP; 191 A; 120 C; 177 G; 184 T; 0 other;
kc841803 Length: 672 29-MAY-2013 Type: N Check: 5389 ..
1 atggacgacg agacaaagaa attgaagaac aaaaacaagg agacgaaaga
51 aggcgacgat gttgttgcag cagagtcttc tttcggttcc gcgaatttac
101 acatcgatcc gactctgata acgatgaacg atgtgcgtca gttgggaacc
151 caacagaacg ctgctttgaa cagagatttg tttcttactc tgaaagggaa
201 gtatcctagc ttgtctgaca aggataagga cttccacata gctatgatgt
251 tatatcgttt agcggttaag agttcatcgt tgcaaagtga tgatgacacc
301 acgggcataa catatactcg agagggtgtt gaagtggatt tgtctgacaa
351 gctttggact gacgtcgtgt ttaactctaa gggtattggt aaccgtacta
401 atgcccttcg agtctggggt aggactaacg atgcccttta tttagctttc
451 tgtagacaga atcgcaattt gagttatggt ggacgtccgc tagatgcagg
501 gattccggct gggtatcatt acctatgtgc agatttcttg accggagctg
551 gcttgactga tttagaatgt gctgtgtaca tacaagctaa ggaacaattg
601 ttaaagaagc gaggggctga tgaagtcgta gttactaatg tcaggcagct
651 tgggaaattt aacacacgtt ga