Sequence of DPV Citrus tristeza virus
Citrus tristeza virus isolate T515 coat protein (CP) gene, complete cds.
ACC No: KC841808
Dated: 2013-05-29 | Length: 672 | CRC: 1923364045
ID KC841808; SV 1; linear; genomic RNA; STD; VRL; 672 BP.
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AC KC841808;
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DT 29-MAY-2013 (Rel. 116, Created)
DT 29-MAY-2013 (Rel. 116, Last updated, Version 1)
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DE Citrus tristeza virus isolate T515 coat protein (CP) gene, complete cds.
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KW .
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OS Citrus tristeza virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae;
OC Closterovirus.
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RN [1]
RP 1-672
RA Wang J., Bozan O., Kwon S.-J., Dang T., Rucker T.L., Yokomi R.K., Lee R.K.,
RA Folimonova S.Y., Krueger R.R., Bash J.A., Greer G.D., Diaz J.M.,
RA Serna R.S., Vidalakis G.;
RT "Past and future of a century old Citrus tristeza virus collection. A
RT California citrus germplasm tale";
RL Unpublished.
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RN [2]
RP 1-672
RA Wang J., Bozan O., Kwon S.-J., Dang T., Rucker T.L., Yokomi R.K., Lee R.K.,
RA Folimonova S.Y., Krueger R.R., Bash J.A., Greer G.D., Diaz J.M.,
RA Serna R.S., Vidalakis G.;
RT ;
RL Submitted (28-MAR-2013) to the INSDC.
RL Department of Plant Pathology and Microbiology, University of California,
RL Riverside, 900 University Ave., Riverside, CA 92521, USA
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CC ##Assembly-Data-START##
CC Assembly Method :: DNA Dragon v. 1.5.3
CC Assembly Name :: CTV-CP
CC Coverage :: 3
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .672
FT /organism="Citrus tristeza virus"
FT /lab_host="Citrus sinensis"
FT /isolate="T515"
FT /mol_type="genomic RNA"
FT /country="USA:Rocky Hill, Calaveras County, California"
FT /isolation_source="originally from Valencia"
FT /collected_by="Dave Cordas"
FT /collection_date="1977"
FT /PCR_primers="fwd_name: CP-U-F-16054-16075, fwd_seq:
FT cwtgagcrctgctttaagggtc, rev_name: CP-U-R-16836-16814,
FT rev_seq: gatgaaactccaccatcccgata"
FT /note="T515 is maintained in planta at the Citrus Clonal
FT Protection Program (CCPP), University of California,
FT Riverside; acronym: CTV; genotype: T30+VT"
FT /db_xref="taxon:12162"
FT gene 1. .672
FT /gene="CP"
FT CDS 1. .672
FT /codon_start=1
FT /gene="CP"
FT /product="coat protein"
FT /note="major coat protein"
FT /protein_id="AGM39405.1"
FT /translation="MDDETKKLKNKNKETKEGDDVVAAESSFGSVNLHIDPTLITMNDV
FT RQLSTQQNAALNRDLFLALKGKYPNLPDKDKDFHIAMMLYRLAVKSSSLQSDDDTTGIT
FT YTREGVEVDLSDKLWTDIVYNSKGIGNRTNALRVWGRTNDALYLAFCRQNRNLSYGGRP
FT LDAGIPAGYHYLCADFLTGAGLTDLECAVYIQAKEQLLKKRGADEVVVTNVRQLGKFNT
FT R"
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SQ Sequence 672 BP; 197 A; 121 C; 170 G; 184 T; 0 other;
kc841808 Length: 672 29-MAY-2013 Type: N Check: 3984 ..
1 atggacgacg aaacaaagaa attgaagaac aaaaacaagg aaacgaaaga
51 aggcgacgat gttgttgctg ctgagtcttc tttcggttcc gtaaacttac
101 acatcgatcc gactctgata acgatgaacg atgtgcgtca gttgagtact
151 caacagaatg ctgctttgaa cagggactta tttcttgctc tgaaagggaa
201 gtatcctaac ttgcctgaca aagataagga ctttcacata gctatgatgt
251 tataccgttt agcggttaag agttcatcat tgcaaagtga tgatgacacc
301 acgggcataa cgtacactcg ggagggtgtt gaagtagatt tgtctgacaa
351 actttggacc gacatcgtgt ataattctaa gggtattggt aaccgaacta
401 acgcccttcg agtctggggt agaactaacg atgctcttta cttagccttt
451 tgtagacaga accgcaattt gagttatggc ggacgtccgc tagatgcagg
501 gattccggct gggtatcatt atttgtgtgc agatttcttg accggagctg
551 gcttgactga tttagaatgt gctgtgtaca tacaagctaa agaacaattg
601 ttgaaaaagc gaggggctga tgaggttgta gttactaatg tcaggcagct
651 tgggaaattt aacacacgtt ga