Sequence of DPV Citrus tristeza virus
Citrus tristeza virus isolate T519 coat protein (CP) gene, complete cds.
ACC No: KC841810
Dated: 2013-05-29 | Length: 672 | CRC: -220655512
ID KC841810; SV 1; linear; genomic RNA; STD; VRL; 672 BP.
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AC KC841810;
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DT 29-MAY-2013 (Rel. 116, Created)
DT 29-MAY-2013 (Rel. 116, Last updated, Version 1)
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DE Citrus tristeza virus isolate T519 coat protein (CP) gene, complete cds.
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KW .
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OS Citrus tristeza virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae;
OC Closterovirus.
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RN [1]
RP 1-672
RA Wang J., Bozan O., Kwon S.-J., Dang T., Rucker T.L., Yokomi R.K., Lee R.K.,
RA Folimonova S.Y., Krueger R.R., Bash J.A., Greer G.D., Diaz J.M.,
RA Serna R.S., Vidalakis G.;
RT "Past and future of a century old Citrus tristeza virus collection. A
RT California citrus germplasm tale";
RL Unpublished.
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RN [2]
RP 1-672
RA Wang J., Bozan O., Kwon S.-J., Dang T., Rucker T.L., Yokomi R.K., Lee R.K.,
RA Folimonova S.Y., Krueger R.R., Bash J.A., Greer G.D., Diaz J.M.,
RA Serna R.S., Vidalakis G.;
RT ;
RL Submitted (28-MAR-2013) to the INSDC.
RL Department of Plant Pathology and Microbiology, University of California,
RL Riverside, 900 University Ave., Riverside, CA 92521, USA
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CC ##Assembly-Data-START##
CC Assembly Method :: DNA Dragon v. 1.5.3
CC Assembly Name :: CTV-CP
CC Coverage :: 3
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .672
FT /organism="Citrus tristeza virus"
FT /lab_host="Citrus sinensis"
FT /isolate="T519"
FT /mol_type="genomic RNA"
FT /country="USA:Riverside, California"
FT /isolation_source="originally from Meyer Lemon"
FT /collected_by="Chester Roistacher"
FT /collection_date="1978"
FT /PCR_primers="fwd_name: CP-U-F-16054-16075, fwd_seq:
FT cwtgagcrctgctttaagggtc, rev_name: CP-U-R-16836-16814,
FT rev_seq: gatgaaactccaccatcccgata"
FT /note="T519 is maintained in planta at the Citrus Clonal
FT Protection Program (CCPP), University of California,
FT Riverside; acronym: CTV; genotype: T30+VT"
FT /db_xref="taxon:12162"
FT gene 1. .672
FT /gene="CP"
FT CDS 1. .672
FT /codon_start=1
FT /gene="CP"
FT /product="coat protein"
FT /note="major coat protein"
FT /protein_id="AGM39407.1"
FT /translation="MDDETKKLKNKNKETKEGDDVVAAESSFGSLNLHIDPTLIAMNDV
FT RQLGTQQNAALNRDLFLTLKGKYPNLSDKDKDFHIAMMLYRLAVKSSSLQSDDDTTGIT
FT YTREGVEVDLSDKLWTDVVFNSKGIGNRTNALRVWGRSNDALYLAFCRQNRNLSYGGRP
FT LDAGIPAGYHYLCADFLTGAGLTDLECAVYIQAKEQLLKKRGADEVVVTNVRQLGKFNT
FT R"
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SQ Sequence 672 BP; 191 A; 125 C; 177 G; 179 T; 0 other;
kc841810 Length: 672 29-MAY-2013 Type: N Check: 2500 ..
1 atggacgacg agacaaagaa attgaagaac aaaaacaagg aaacgaaaga
51 aggcgacgat gttgttgcag cggagtcttc tttcggttcc ttaaacttac
101 acatcgatcc gactctgata gcgatgaacg acgtgcgtca gttaggtacc
151 caacagaacg ccgctttgaa cagagatttg ttccttactt tgaaagggaa
201 gtatcctaat ttgtctgata aagataagga ctttcacata gctatgatgt
251 tgtatcgttt agcggttaag agttcatcat tgcaaagtga tgacgacacc
301 acgggcataa cgtacactcg ggagggcgtc gaagtggatt tgtctgacaa
351 actttggact gacgtcgtgt tcaattctaa gggtatcggt aaccgtacta
401 acgcccttcg agtctggggt agaagtaacg atgcccttta tttagcgttt
451 tgtagacaga atcgcaattt gagttatggc ggacgtccgc tagatgcagg
501 gattccggcc gggtatcatt acctgtgtgc agatttcttg accggagctg
551 gcttgactga tttggaatgt gctgtgtaca tacaagctaa agaacaattg
601 ttgaagaagc gaggggctga tgaagtcgta gttactaatg tcaggcagct
651 tgggaaattt aacacacgtt ga