Sequence of DPV Citrus tristeza virus
Citrus tristeza virus isolate SY580 coat protein (CP) gene, complete cds.
ACC No: KC841818
Dated: 2013-05-29 | Length: 672 | CRC: 1294798432
ID KC841818; SV 1; linear; genomic RNA; STD; VRL; 672 BP.
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AC KC841818;
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DT 29-MAY-2013 (Rel. 116, Created)
DT 29-MAY-2013 (Rel. 116, Last updated, Version 1)
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DE Citrus tristeza virus isolate SY580 coat protein (CP) gene, complete cds.
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KW .
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OS Citrus tristeza virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae;
OC Closterovirus.
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RN [1]
RP 1-672
RA Wang J., Bozan O., Kwon S.-J., Dang T., Rucker T.L., Yokomi R.K., Lee R.K.,
RA Folimonova S.Y., Krueger R.R., Bash J.A., Greer G.D., Diaz J.M.,
RA Serna R.S., Vidalakis G.;
RT "Past and future of a century old Citrus tristeza virus collection. A
RT California citrus germplasm tale";
RL Unpublished.
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RN [2]
RP 1-672
RA Wang J., Bozan O., Kwon S.-J., Dang T., Rucker T.L., Yokomi R.K., Lee R.K.,
RA Folimonova S.Y., Krueger R.R., Bash J.A., Greer G.D., Diaz J.M.,
RA Serna R.S., Vidalakis G.;
RT ;
RL Submitted (28-MAR-2013) to the INSDC.
RL Department of Plant Pathology and Microbiology, University of California,
RL Riverside, 900 University Ave., Riverside, CA 92521, USA
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CC ##Assembly-Data-START##
CC Assembly Method :: DNA Dragon v. 1.5.3
CC Assembly Name :: CTV-CP
CC Coverage :: 3
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .672
FT /organism="Citrus tristeza virus"
FT /lab_host="Citrus sinensis"
FT /isolate="SY580"
FT /mol_type="genomic RNA"
FT /country="USA:Riverside, California"
FT /isolation_source="originally from Finike Sweet Orange in
FT Riverside Citrus Research Center and Agricultural
FT Experiment Station (CRC 3479). CRC 3479 was received by Ed
FT Nauer as budwood from Turkey in 1963. Trees were propagated
FT in the Rubidoux quarantine screenhouse and when fruited
FT seedlings were planted in the CRC fields in 1966"
FT /collected_by="Chester Roistacher"
FT /collection_date="1980"
FT /PCR_primers="fwd_name: CP-U-F-16054-16075, fwd_seq:
FT cwtgagcrctgctttaagggtc, rev_name: CP-U-R-16836-16814,
FT rev_seq: gatgaaactccaccatcccgata"
FT /note="SY580 is maintained in planta at the Citrus Clonal
FT Protection Program (CCPP), University of California,
FT Riverside; acronym: CTV; genotype: T30+VT"
FT /db_xref="taxon:12162"
FT gene 1. .672
FT /gene="CP"
FT CDS 1. .672
FT /codon_start=1
FT /gene="CP"
FT /product="coat protein"
FT /note="major coat protein"
FT /protein_id="AGM39415.1"
FT /translation="MDDETKKLKNKNKETKEGDDVVAAESSFGSLNLHIDPTLIAMNDV
FT RQLGTQQNAALNRDLFLTLKGKYPNLPDKDKDFHIAMMLYRLAVKSSSLQSDDDTTGVT
FT YTREGVEVELSDKLWTDVVFNSKGIGNRTNALRVWGRTNDALYLAFCRQNRNLSYGGRP
FT LDAGIPAGYHYLCADFLTGAGLTDLECAVYLQAKEQLLKKRGADEVVVTNVRQLGKFNT
FT R"
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SQ Sequence 672 BP; 198 A; 122 C; 170 G; 182 T; 0 other;
kc841818 Length: 672 29-MAY-2013 Type: N Check: 4050 ..
1 atggacgacg aaacaaagaa attgaagaac aaaaacaagg aaacgaaaga
51 aggcgacgat gttgttgcag ctgagtcttc tttcggttcg ttaaacttac
101 acatcgatcc gactctgata gcgatgaacg atgtgcgtca gttgggtacc
151 caacagaatg ctgctttgaa tagagatttg tttcttacct tgaaagggaa
201 gtatcccaac ttacctgaca aagataaaga ctttcacata gctatgatgt
251 tatatcgttt agcagttaag agttcatcat tacaaagcga cgatgatacc
301 acgggtgtga cgtacactcg ggaaggtgtt gaagtggagt tgtctgacaa
351 actttggaca gacgtcgtgt ttaactctaa gggtattggt aaccgtacta
401 acgcccttcg agtctggggt agaactaacg atgcccttta tttggctttt
451 tgtagacaga accgcaactt gagttatggt ggacgtccgt tagatgcagg
501 aattccagcc gggtatcact acctgtgtgc agatttcttg accggagctg
551 gcttgactga tttagaatgt gcagtgtact tacaagctaa agagcaatta
601 ttaaagaagc gaggggctga tgaggtcgta gttactaatg tcaggcagct
651 tgggaaattt aacacacgtt ga