Sequence of DPV Citrus tristeza virus
Citrus tristeza virus isolate SY551 coat protein (CP) gene, complete cds.
ACC No: KC841822
Dated: 2013-05-29 | Length: 672 | CRC: -942164301
ID KC841822; SV 1; linear; genomic RNA; STD; VRL; 672 BP.
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AC KC841822;
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DT 29-MAY-2013 (Rel. 116, Created)
DT 29-MAY-2013 (Rel. 116, Last updated, Version 1)
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DE Citrus tristeza virus isolate SY551 coat protein (CP) gene, complete cds.
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KW .
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OS Citrus tristeza virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae;
OC Closterovirus.
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RN [1]
RP 1-672
RA Wang J., Bozan O., Kwon S.-J., Dang T., Rucker T.L., Yokomi R.K., Lee R.K.,
RA Folimonova S.Y., Krueger R.R., Bash J.A., Greer G.D., Diaz J.M.,
RA Serna R.S., Vidalakis G.;
RT "Past and future of a century old Citrus tristeza virus collection. A
RT California citrus germplasm tale";
RL Unpublished.
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RN [2]
RP 1-672
RA Wang J., Bozan O., Kwon S.-J., Dang T., Rucker T.L., Yokomi R.K., Lee R.K.,
RA Folimonova S.Y., Krueger R.R., Bash J.A., Greer G.D., Diaz J.M.,
RA Serna R.S., Vidalakis G.;
RT ;
RL Submitted (28-MAR-2013) to the INSDC.
RL Department of Plant Pathology and Microbiology, University of California,
RL Riverside, 900 University Ave., Riverside, CA 92521, USA
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CC ##Assembly-Data-START##
CC Assembly Method :: DNA Dragon v. 1.5.3
CC Assembly Name :: CTV-CP
CC Coverage :: 3
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .672
FT /organism="Citrus tristeza virus"
FT /lab_host="Citrus sinensis"
FT /isolate="SY551"
FT /mol_type="genomic RNA"
FT /country="USA:Riverside, California"
FT /isolation_source="originally from Nagami Kumquat on Troyer
FT citrange rootstock in Riverside Citrus Research Center and
FT Agricultural Experiment Station (CRC 268). CRC 268 was
FT introduced from Florida by Dr. Fawcett in 1917"
FT /collected_by="Chester Roistacher"
FT /collection_date="1967"
FT /PCR_primers="fwd_name: CP-U-F-16054-16075, fwd_seq:
FT cwtgagcrctgctttaagggtc, rev_name: CP-U-R-16836-16814,
FT rev_seq: gatgaaactccaccatcccgata"
FT /note="SY551 is maintained in planta at the Citrus Clonal
FT Protection Program (CCPP), University of California,
FT Riverside; acronym: CTV; genotype: T30+T36"
FT /db_xref="taxon:12162"
FT gene 1. .672
FT /gene="CP"
FT CDS 1. .672
FT /codon_start=1
FT /gene="CP"
FT /product="coat protein"
FT /note="major coat protein"
FT /protein_id="AGM39419.1"
FT /translation="MDDETKKLKNKNKETKEGDDVVAAESSFSSVNLHIDPTLITMNDV
FT RQLSTQQNAALNRDLFLTLKGKHPNLPDKDKDFHIAMMLYRLAVKSSSLQSDDDATGIT
FT YTREGVEVDLSDKLWTDVVFNSKGIGNRTNALRVWGRTNDALYLAFCRQNRNLSYGGRP
FT LDAGIPAGYHYLCADFLTGAGLTDLECAVYIQAKEQLLKKRGADDVVVTNVRQLGKFNT
FT R"
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SQ Sequence 672 BP; 198 A; 127 C; 166 G; 181 T; 0 other;
kc841822 Length: 672 29-MAY-2013 Type: N Check: 1063 ..
1 atggacgacg aaacaaagaa attgaagaac aaaaacaagg aaacaaaaga
51 aggcgacgat gttgttgctg ccgagtcttc tttcagttcc gtaaacttac
101 acatcgatcc gactttgata acgatgaacg atgtgcgtca gttgagtacc
151 caacagaacg ctgctttgaa cagagactta ttcctcactt tgaaagggaa
201 gcatcctaac ttacccgata aagataaaga ctttcacata gctatgatgt
251 tgtatcgttt agcagttaag agttcatcat tacaaagcga tgacgacgcc
301 acgggtataa cgtacactcg ggagggtgtt gaagtggatt tgtctgacaa
351 actttggact gacgtcgtgt ttaactctaa gggtattggt aaccgtacta
401 acgcccttcg agtttggggt agaactaacg atgcccttta cttagctttt
451 tgcagacaga atcgcaattt gagttatggc ggacgtccgc tagacgcagg
501 gattccggcc gggtatcatt acttgtgtgc ggatttcttg actggagctg
551 gtttgactga tttagaatgt gctgtgtaca tacaagctaa agaacaatta
601 ttgaagaagc gaggggctga tgatgtcgta gttactaatg tcaggcagct
651 tgggaaattc aacacacgtt ga