Sequence of DPV Citrus tristeza virus
Citrus tristeza virus isolate SY553 coat protein (CP) gene, complete cds.
ACC No: KC841823
Dated: 2013-05-29 | Length: 672 | CRC: -942164301
ID KC841823; SV 1; linear; genomic RNA; STD; VRL; 672 BP.
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AC KC841823;
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DT 29-MAY-2013 (Rel. 116, Created)
DT 29-MAY-2013 (Rel. 116, Last updated, Version 1)
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DE Citrus tristeza virus isolate SY553 coat protein (CP) gene, complete cds.
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KW .
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OS Citrus tristeza virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae;
OC Closterovirus.
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RN [1]
RP 1-672
RA Wang J., Bozan O., Kwon S.-J., Dang T., Rucker T.L., Yokomi R.K., Lee R.K.,
RA Folimonova S.Y., Krueger R.R., Bash J.A., Greer G.D., Diaz J.M.,
RA Serna R.S., Vidalakis G.;
RT "Past and future of a century old Citrus tristeza virus collection. A
RT California citrus germplasm tale";
RL Unpublished.
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RN [2]
RP 1-672
RA Wang J., Bozan O., Kwon S.-J., Dang T., Rucker T.L., Yokomi R.K., Lee R.K.,
RA Folimonova S.Y., Krueger R.R., Bash J.A., Greer G.D., Diaz J.M.,
RA Serna R.S., Vidalakis G.;
RT ;
RL Submitted (28-MAR-2013) to the INSDC.
RL Department of Plant Pathology and Microbiology, University of California,
RL Riverside, 900 University Ave., Riverside, CA 92521, USA
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CC ##Assembly-Data-START##
CC Assembly Method :: DNA Dragon v. 1.5.3
CC Assembly Name :: CTV-CP
CC Coverage :: 3
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .672
FT /organism="Citrus tristeza virus"
FT /lab_host="Citrus sinensis"
FT /isolate="SY553"
FT /mol_type="genomic RNA"
FT /country="USA:Riverside, California"
FT /isolation_source="originally from Meyer Lemon in Riverside
FT Citrus Research Center and Agricultural Experiment Station
FT ( PI 23028 & CRC 662). CRC 662 was introduced as plants
FT from USDA Plant Introduction Station Chico, California in
FT 1917. The PI 23028 was introduced from China by F Meyer"
FT /collected_by="Chester Roistacher"
FT /collection_date="1960"
FT /PCR_primers="fwd_name: CP-U-F-16054-16075, fwd_seq:
FT cwtgagcrctgctttaagggtc, rev_name: CP-U-R-16836-16814,
FT rev_seq: gatgaaactccaccatcccgata"
FT /note="SY553 is maintained in planta at the Citrus Clonal
FT Protection Program (CCPP), University of California,
FT Riverside; acronym: CTV; genotype: VT+T36"
FT /db_xref="taxon:12162"
FT gene 1. .672
FT /gene="CP"
FT CDS 1. .672
FT /codon_start=1
FT /gene="CP"
FT /product="coat protein"
FT /note="major coat protein"
FT /protein_id="AGM39420.1"
FT /translation="MDDETKKLKNKNKETKEGDDVVAAESSFSSVNLHIDPTLITMNDV
FT RQLSTQQNAALNRDLFLTLKGKHPNLPDKDKDFHIAMMLYRLAVKSSSLQSDDDATGIT
FT YTREGVEVDLSDKLWTDVVFNSKGIGNRTNALRVWGRTNDALYLAFCRQNRNLSYGGRP
FT LDAGIPAGYHYLCADFLTGAGLTDLECAVYIQAKEQLLKKRGADDVVVTNVRQLGKFNT
FT R"
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SQ Sequence 672 BP; 198 A; 127 C; 166 G; 181 T; 0 other;
kc841823 Length: 672 29-MAY-2013 Type: N Check: 1063 ..
1 atggacgacg aaacaaagaa attgaagaac aaaaacaagg aaacaaaaga
51 aggcgacgat gttgttgctg ccgagtcttc tttcagttcc gtaaacttac
101 acatcgatcc gactttgata acgatgaacg atgtgcgtca gttgagtacc
151 caacagaacg ctgctttgaa cagagactta ttcctcactt tgaaagggaa
201 gcatcctaac ttacccgata aagataaaga ctttcacata gctatgatgt
251 tgtatcgttt agcagttaag agttcatcat tacaaagcga tgacgacgcc
301 acgggtataa cgtacactcg ggagggtgtt gaagtggatt tgtctgacaa
351 actttggact gacgtcgtgt ttaactctaa gggtattggt aaccgtacta
401 acgcccttcg agtttggggt agaactaacg atgcccttta cttagctttt
451 tgcagacaga atcgcaattt gagttatggc ggacgtccgc tagacgcagg
501 gattccggcc gggtatcatt acttgtgtgc ggatttcttg actggagctg
551 gtttgactga tttagaatgt gctgtgtaca tacaagctaa agaacaatta
601 ttgaagaagc gaggggctga tgatgtcgta gttactaatg tcaggcagct
651 tgggaaattc aacacacgtt ga