Sequence of DPV Citrus tristeza virus
Citrus tristeza virus isolate T535 coat protein (CP) gene, complete cds.
ACC No: KC841825
Dated: 2013-05-29 | Length: 672 | CRC: -942164301
ID KC841825; SV 1; linear; genomic RNA; STD; VRL; 672 BP.
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AC KC841825;
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DT 29-MAY-2013 (Rel. 116, Created)
DT 29-MAY-2013 (Rel. 116, Last updated, Version 1)
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DE Citrus tristeza virus isolate T535 coat protein (CP) gene, complete cds.
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KW .
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OS Citrus tristeza virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae;
OC Closterovirus.
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RN [1]
RP 1-672
RA Wang J., Bozan O., Kwon S.-J., Dang T., Rucker T.L., Yokomi R.K., Lee R.K.,
RA Folimonova S.Y., Krueger R.R., Bash J.A., Greer G.D., Diaz J.M.,
RA Serna R.S., Vidalakis G.;
RT "Past and future of a century old Citrus tristeza virus collection. A
RT California citrus germplasm tale";
RL Unpublished.
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RN [2]
RP 1-672
RA Wang J., Bozan O., Kwon S.-J., Dang T., Rucker T.L., Yokomi R.K., Lee R.K.,
RA Folimonova S.Y., Krueger R.R., Bash J.A., Greer G.D., Diaz J.M.,
RA Serna R.S., Vidalakis G.;
RT ;
RL Submitted (28-MAR-2013) to the INSDC.
RL Department of Plant Pathology and Microbiology, University of California,
RL Riverside, 900 University Ave., Riverside, CA 92521, USA
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CC ##Assembly-Data-START##
CC Assembly Method :: DNA Dragon v. 1.5.3
CC Assembly Name :: CTV-CP
CC Coverage :: 3
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .672
FT /organism="Citrus tristeza virus"
FT /lab_host="Citrus sinensis"
FT /isolate="T535"
FT /mol_type="genomic RNA"
FT /country="Japan"
FT /isolation_source="originally from an illegal introduction
FT of Shiranui Dekopon mandarin from Japan in to Navelencia,
FT Fresno County, California in 2000. Budwood of Etrog citron
FT graft inoculated with Shiranui Dekopon (#108-A,B,C and
FT #109-A,B) was given to Georgios Vidalakis (UC Riverside,
FT CCPP) from Raymont Yokomi (USDA-Parlier) for viroid testing
FT in 2006 (CCPP #3014)"
FT /collected_by="Central California Tristeza Eradication
FT Agency (CCTEA)"
FT /collection_date="2000"
FT /PCR_primers="fwd_name: CP-U-F-16054-16075, fwd_seq:
FT cwtgagcrctgctttaagggtc, rev_name: CP-U-R-16836-16814,
FT rev_seq: gatgaaactccaccatcccgata"
FT /note="T535 is maintained in planta at the Citrus Clonal
FT Protection Program (CCPP), University of California,
FT Riverside; acronym: CTV; genotype: T30+VT+T36"
FT /db_xref="taxon:12162"
FT gene 1. .672
FT /gene="CP"
FT CDS 1. .672
FT /codon_start=1
FT /gene="CP"
FT /product="coat protein"
FT /note="major coat protein"
FT /protein_id="AGM39422.1"
FT /translation="MDDETKKLKNKNKETKEGDDVVAAESSFSSVNLHIDPTLITMNDV
FT RQLSTQQNAALNRDLFLTLKGKHPNLPDKDKDFHIAMMLYRLAVKSSSLQSDDDATGIT
FT YTREGVEVDLSDKLWTDVVFNSKGIGNRTNALRVWGRTNDALYLAFCRQNRNLSYGGRP
FT LDAGIPAGYHYLCADFLTGAGLTDLECAVYIQAKEQLLKKRGADDVVVTNVRQLGKFNT
FT R"
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SQ Sequence 672 BP; 198 A; 127 C; 166 G; 181 T; 0 other;
kc841825 Length: 672 29-MAY-2013 Type: N Check: 1063 ..
1 atggacgacg aaacaaagaa attgaagaac aaaaacaagg aaacaaaaga
51 aggcgacgat gttgttgctg ccgagtcttc tttcagttcc gtaaacttac
101 acatcgatcc gactttgata acgatgaacg atgtgcgtca gttgagtacc
151 caacagaacg ctgctttgaa cagagactta ttcctcactt tgaaagggaa
201 gcatcctaac ttacccgata aagataaaga ctttcacata gctatgatgt
251 tgtatcgttt agcagttaag agttcatcat tacaaagcga tgacgacgcc
301 acgggtataa cgtacactcg ggagggtgtt gaagtggatt tgtctgacaa
351 actttggact gacgtcgtgt ttaactctaa gggtattggt aaccgtacta
401 acgcccttcg agtttggggt agaactaacg atgcccttta cttagctttt
451 tgcagacaga atcgcaattt gagttatggc ggacgtccgc tagacgcagg
501 gattccggcc gggtatcatt acttgtgtgc ggatttcttg actggagctg
551 gtttgactga tttagaatgt gctgtgtaca tacaagctaa agaacaatta
601 ttgaagaagc gaggggctga tgatgtcgta gttactaatg tcaggcagct
651 tgggaaattc aacacacgtt ga