Sequence of DPV Giardia lamblia virus
Gardiavirus genomic sequence.
ACC No: L13218
Dated: 2000-03-04 | Length: 6277 | CRC: -1822262855
!!NA_SEQUENCE 1.0
ID GLCG standard; RNA; VRL; 6277 BP.
XX
AC L13218;
XX
SV L13218.1
XX
DT 04-JAN-1994 (Rel. 38, Created)
DT 04-MAR-2000 (Rel. 63, Last updated, Version 7)
XX
DE Gardiavirus genomic sequence.
XX
KW .
XX
OS Giardiavirus sp.
OC Viruses; dsRNA viruses; Totiviridae; Giardiavirus.
XX
RN [1]
RP 1-6099
RX MEDLINE; 93391401.
RA Wang A.L., Yang H.M., Shen K.A., Wang C.C.;
RT "Giardiavirus double-stranded RNA genome encodes a capsid polypeptide and a
RT gag-pol-like fusion protein by a translation frameshift";
RL Proc. Natl. Acad. Sci. U.S.A. 90(18):8595-8599(1993).
XX
RN [2]
RP 6060-6277
RX MEDLINE; 95309710.
RA Wu C.H., Wang C.C., Yang H.M., Wang A.L.;
RT "Sequences at four termini of the giardiavirus double-stranded RNA";
RL Gene 158(1):129-131(1995).
XX
RN [3]
RP 1-6099
RA Wang A.L.;
RT ;
RL Submitted (28-OCT-1993) to the EMBL/GenBank/DDBJ databases.
RL Alice L. Wang, Dept. of Pharmaceutical Chemistry, University of California,
RL San Francisco, CA 94143-0446, USA
XX
RN [4]
RP 6100-6277
RA Wang A.L.;
RT ;
RL Submitted (08-NOV-1994) to the EMBL/GenBank/DDBJ databases.
RL Alice L. Wang, Dept. of Pharmaceutical Chemistry, University of California,
RL San Francisco, CA 94143-0446, USA
XX
RN [5]
RP 1-6277
RA Yu D.;
RT ;
RL Submitted (15-MAR-1996) to the EMBL/GenBank/DDBJ databases.
RL DeChao Yu, School of Pharmacy, University of California, San Francisco, CA
RL 94143, USA
XX
DR SPTREMBL; Q67652; Q67652.
DR SPTREMBL; Q67653; Q67653.
XX
CC On Jun 4, 1996 this sequence version replaced gi:576675.
XX
FH Key Location/Qualifiers
FH
FT source 1. .6277
FT /db_xref="taxon:37134"
FT /organism="Giardiavirus sp."
FT /specific_host="Portland 1"
FT CDS 367. .3027
FT /codon_start=1
FT /db_xref="SPTREMBL:Q67652"
FT /note="ORF1"
FT /product="capsid protein"
FT /protein_id="AAB01578.1"
FT /translation="MVWGTGYGNPSPLNPYGFASLHRGGLNPLILAPENITFDTLNTHN
FT DHEETHGESPEVPKASIAPAGRQNVPVLQQNQENEDNHALGGSEDAKDEREIRFSAIKT
FT LYNYYSEGPSTPIMPHLVNRLRGLDALAKIDATLTKVDMNAAYIFALRPTFPYSYGYKQ
FT RFSNRRLTTSALCYARTGLSSFLTVDKTYTSNSPLKGGSRGWPIFNVDVSSHVAEPHMR
FT TLSPIGLEVFNLATSQFSKTLLTASSKVFTQSLYTADILSIFGEVFLPHVMQPVSNYTP
FT ILVRALLALIHILGPGSGNCSLSSSIFESSIPQFLTVSHSTNMSNRTRYCLHTRSAYKD
FT MFRNGIPPQSTLPPTLAPEGSSARVLIPEALVTSPMFPWLLILVSSGPQFFLYSKDASI
FT NTVDIGSRGRITSPIPDVAKLDLHRLWNLFRFDGYRYIDVVIVGADRDYVWPYQNGVYV
FT HGGKGPNGTGNYGNADVHDGIGTIFSSFNNNVNVQTSDLMLGLLTLWNHITTTYATEEE
FT VTMAIKIAAAFALVYPVQPIVYSGCPKAFQRHTSYYQPSSENCYATDTAEVKSVWDTVE
FT LSVQVNNAMVLGMTLPFGQPTLSSAQWYNNIDKAEISMFKVGNLPLQNLDYLSLDMMEF
FT YAPTTGQLYDIRSDNLILSAHRTVNLGIGYTALADFFAYLASVPAQSFYHDRMVTSPIS
FT KQTYSVYERFIERFIDDFVGWDRCDLFNLDTLLGAKHIAGVASSPIPWHCSLQRCPLPI
FT IMHYTGLTFGQEHITVRDVAGVEGLQQIVMRDFQGRIVVERLGTAAPSRIAVKLDWSRL
FT SAWYSDTTCAIPLSDRVMEIVNYAAIWDPTQERHAQVSCTHTLAPISFRALTCLSLYSI
FT RVSTLHHLMTTRAKL"
FT CDS <2805. .5978
FT /codon_start=1
FT /db_xref="SPTREMBL:Q67653"
FT /note="ORF2; translated by -1 ribosome frameshift"
FT /product="gag-pol fusion protein"
FT /protein_id="AAB01579.1"
FT /translation="CLVLRHNLRHPFIRSCDGDRQLRGNMGSYTGKTRTGFVYTYFSPN
FT FLSSFNVSEPIFNTSINLTPPYDDTSQAVIQNLSMPQMLSFDPYYESTFYVVSADNEWI
FT PTSGPAWKVPYLENVVKRSGRRLLAELRIASNNGSGDRTFLTTCKTRKGRHFTYFSAAL
FT GGKILEFVCAPLSSISLQGGQTIYAPIQLQDVIPVRKEDPVPGSIYAVFKFFSEPKAWE
FT ARALKSYKVRFQDLPSHIVISELKERAARSYIGSRGYVDTGFKALDIYIDILSQMELPK
FT YIHEFLILLRGKVCEVSRLYKKEQVFVILLTVFSELTAIVRHRGNKSTGSMGRMWTLLS
FT DFETLLGKVSYKNPSIIEEQVVPWLTSDPIPRTPDFYSTYFKTAVQFMHRTFVPVTLRS
FT APPLTFHEYCGRPELWGTTGSGYIGYGKRSFNKWSIYGAYPTEEIYRLALYGDNPPLKP
FT LEKPELTKVRAVISASLQSYILMSYLEYIMADTIVDKAFTTTLMNDRQLENLERHMMTM
FT TGGVRVPVDQSNFDRQPDLVQIGIWQQLLFHLASASAPYRARDSVSLVISRLASTTTFP
FT NLKVRMSDGDKRVLHGLPSGWKWTALLGALINVTQLLTMAELSNTLASLRSTVVQGDDI
FT ALSMTDREQATQLVDTYARQGFEVNPKKFWISPDRDEFLRRVATPGIVAGYPARMMIKL
FT LYQLTEPEEPSHYISMLPKLAKVPNVVQEHVKPRSDVPWSETVEELDWREALAILRHRP
FT ARTSELVTQWLQLIGRFTAAHPDKRALTLLYRWFVRDLTHATKIKKRNLLVLLQQPGFW
FT GGYSQSLVGLLRTTHLADMIVSELDIGLPGPRATSSRFGTSPTSLAPHYLTLIVPSSVH
FT VQSQKELDLWGLCRSSKYAKHYSNIFRYYKLTLPTLVLWAQRLGDKHVTDFIRSVTLGS
FT EIPKYDPHARLFTSNGVSVGMLIRIRVRHFTHRVLRRETPKCIPVIVGLYREQTLSVPE
FT SVRLSEPDKILLSLQRASGYSLNLVKKILQITRKPVDHPVDARFSQAFPNNWSDLARTA
FT GTFLLTVPA"
XX
SQ Sequence 6277 BP; 1606 A; 1576 C; 1565 G; 1530 T; 0 other;
L13218 Length: 6277 December 21, 2001 15:46 Type: N Check: 8655 ..
1 ggaaggagtg ccaggccatt accttccgcc cctgcctaac aaaactggct
51 cgccagaggc gggggggcgt ggtagacggt atgtctaggt ccagagaaag
101 cggccgctgt taggctgcta gacttcgcca cgcttacacc attgagaaca
151 cataggtggt gtaatattat gtgtttggct gcgtgtgtca cgagcacgat
201 ctatggggga atctaaccca ggtggtgttg tgtatgatga ggtacaagcc
251 cgtcaacacc acaggtggag agggacagga gtctcatttc ccctccaaaa
301 aacagcagtg gtccgcccct catgccctat gaaacattag ggggccgaca
351 ctagtgggca agcccgatgg tgtgggggac tggatatggg aaccccagtc
401 cgttaaaccc gtacggcttc gccagcctac accggggggg gcttaatccc
451 cttattttgg cacctgaaaa tattactttt gacactttaa acacacacaa
501 tgatcacgag gagacccatg gagagtctcc agaggttcct aaggcctcga
551 tcgcgcctgc cgggaggcag aatgtcccgg ttctccaaca aaatcaagaa
601 aacgaagata atcacgcgct gggcggtagc gaggacgcca aagatgagcg
651 cgaaatacga ttctcagcca taaaaactct ctacaattat tactcagagg
701 gtccttcgac cccaattatg ccgcatttag ttaacaggtt acgtggatta
751 gatgccctgg ccaagataga cgcgacgctg accaaggtgg atatgaacgc
801 ggcctacata ttcgccctga gaccgacttt tccgtattcg tatgggtata
851 aacagcgctt cagtaacagg agattaacca ctagtgcgct ttgctacgca
901 aggacgggtc tatcctcatt tctgaccgtc gacaaaacgt acacatctaa
951 ctctccatta aaagggggct ctagagggtg gcccattttc aacgtggatg
1001 tttcatcaca cgtggcggag cctcacatga ggacattgtc acctatcggt
1051 cttgaagtat tcaatctggc tacgtctcaa ttttcgaaaa ctctattaac
1101 tgcatcatcg aaagtcttca cgcaatcgct ctacactgct gacatactat
1151 cgatctttgg tgaggtgttc ctgccacacg tgatgcaacc ggtctcaaac
1201 tacactccaa tacttgtgag ggcactattg gccttgatcc acatactggg
1251 gccaggatct ggtaattgct cactttcatc gtctatcttc gagagctcaa
1301 ttccacaatt ccttacggta agtcatagta cgaacatgtc gaatagaacg
1351 aggtactgct tacatacgag gtctgcttac aaggatatgt tcaggaacgg
1401 tatcccacct cagtcgacgt tgccaccgac gctcgcgccg gaggggtcct
1451 ctgctcgggt tttaatccca gaggccctag tgaccagccc tatgtttcca
1501 tggttactta tcttagtctc gagcggccca cagttcttct tgtattcaaa
1551 ggacgctagt attaataccg tagacatcgg ttcgaggggg aggattacat
1601 caccaatccc tgacgtcgcc aagcttgatc tccacagact ctggaatctc
1651 ttccgttttg atggttaccg ctacatcgac gtggtcatag tgggcgcgga
1701 tagagattac gtgtggccct atcaaaatgg cgtgtatgta cacggcggca
1751 agggacccaa tggtactggc aactacggga acgctgacgt tcatgacgga
1801 atagggacga tattttcgtc tttcaacaac aatgttaacg tgcaaacgtc
1851 cgacctcatg ctgggcctat tgaccctgtg gaaccacata acgactacgt
1901 acgctactga ggaggaggtc accatggcga ttaagattgc agcggctttt
1951 gccctcgtct acccagtaca gcctattgtc tactccggtt gcccgaaagc
2001 ttttcagaga cacacgtcat actaccagcc ctcatcggag aactgctacg
2051 caaccgacac ggctgaagtc aagagcgtgt gggatacggt cgagcttagc
2101 gtacaggtta ataacgctat ggtactaggt atgacactac cgtttggcca
2151 acctacactt agcagtgcac aatggtataa taacatcgat aaggccgaga
2201 tctctatgtt taaggtcggc aatctaccgt tacagaacct cgattatcta
2251 tctctcgata tgatggaatt ctacgctcct acgacaggac aactgtacga
2301 catacgtagt gataacctga tcttgagcgc ccataggacg gtgaacctcg
2351 gaataggcta cacagctctg gcagatttct tcgcttatct agcttcagtt
2401 cctgcccaga gtttttacca cgacaggatg gtcacctcac cgatctcaaa
2451 gcagacgtac tccgtctatg aacgttttat tgaacgtttt attgatgact
2501 tcgtaggctg ggacagatgt gacctgttca accttgatac attgttaggt
2551 gcaaaacaca tagccggggt agcctcatct ccaatcccgt ggcactgctc
2601 gctacagaga tgcccactac ccataatcat gcattacaca ggcctcactt
2651 tcggccagga gcatataaca gtcagggacg tcgccggggt tgagggctta
2701 cagcagatcg tcatgaggga cttccagggt cgtatcgtag tagagcgctt
2751 gggcacagct gcaccatcta gaattgcagt caaattagac tggtctaggc
2801 ttagtgcctg gtactcagac acaacctgcg ccatcccttt atccgatcgt
2851 gtgatggaga tcgtcaatta cgcggcaata tgggatccta cacaggaaag
2901 acacgcacag gtttcgtgta cacatacttt agccccaatt tcctttcgag
2951 ctttaacgtg tctgagccta tattcaatac gagtatcaac cttacaccac
3001 cttatgacga cacgagccaa gctgtaattc aaaatttgtc catgccacag
3051 atgctcagct tcgatcccta ctacgagtct acgttctatg tggtctccgc
3101 ggataacgag tggataccga cttcagggcc tgcttggaag gtaccatatc
3151 tggaaaacgt agttaagcgg tctggcaggc gcttgctggc ggagctcagg
3201 atagcatcca ataacgggtc tggagaccgt accttcttga cgacgtgtaa
3251 gacaagaaag ggaaggcatt ttacctactt ctctgctgct ttggggggca
3301 agatcctgga attcgtatgc gctccactgt cgagtatcag tctccagggc
3351 gggcaaacga tctacgctcc gattcagctc caagacgtca taccagtacg
3401 taaagaggat ccagtgccag ggagcatata tgcagtcttt aagttcttct
3451 cagaaccaaa ggcctgggag gcacgtgcgc ttaagtccta caaagtcagg
3501 ttccaagatc tcccaagcca catagtgatt agtgagttga aagagagagc
3551 ggcgagaagc tatatcgggt cgaggggtta tgtcgataca ggttttaagg
3601 ctttggacat ttatatagat attctttccc aaatggagct gccaaagtac
3651 atacacgagt tcttaatttt actcagaggc aaggtgtgtg aagtctcgag
3701 gttgtacaag aaggaacagg tattcgtaat attactaacc gtattctctg
3751 agctcacagc catagtccgc catagaggta acaagtccac ggggtcgatg
3801 gggaggatgt ggactttgtt atcagacttc gagaccttgc ttgggaaggt
3851 gagctataag aacccgagta tcattgagga gcaggttgtt ccctggctaa
3901 cctcagaccc tataccacgt acccctgact tctactctac atatttcaag
3951 acggctgtcc agtttatgca caggacattc gttcccgtca ctctcagaag
4001 tgcccctccg ttaacatttc acgagtactg tgggaggccg gagctctggg
4051 gaaccacggg atccggctac atcggctatg gcaagcgtag ttttaacaaa
4101 tggtcgatct acggagctta tcctaccgag gagatttatc ggctagcact
4151 ctatggagat aatccacccc tcaagccgct ggaaaaaccc gaacttacga
4201 aggtacgtgc tgtaatctcc gcctccctcc aatcgtatat attgatgtct
4251 tacctcgagt acatcatggc agacaccata gttgacaaag cattcactac
4301 aactctgatg aacgacaggc agctagagaa ccttgagcgc cacatgatga
4351 ccatgaccgg aggagtcagg gttccagtgg accagtccaa ttttgatcgc
4401 cagcctgact tggtccaaat aggcatctgg caacagttac tgtttcacct
4451 ggcatctgcg tcagctccgt acagagcccg cgacagtgtc tcattagtca
4501 tatcacgttt agcttcaact acgactttcc caaacctaaa ggtacggatg
4551 tcggacggtg acaaacgtgt gctacacggc ctcccctcgg ggtggaagtg
4601 gaccgctctg ctaggggctc tcatcaatgt gacacaactt ttaaccatgg
4651 cggaattgtc caacactctg gcctcgttga ggtcaacggt ggtgcagggc
4701 gacgatatcg ctctaagtat gactgaccgg gagcaggcca cacagttagt
4751 tgacacttat gcacgtcagg ggttcgaggt caacccgaag aagttctgga
4801 tatcacccga ccgggacgaa ttccttcgga gggtagcaac ccctggtata
4851 gtcgcggggt acccagctag aatgatgatt aaattgttat atcagctgac
4901 ggaacctgaa gagccctcac actacatctc catgttgcca aagttagcga
4951 aggtgcctaa cgtggtccag gagcatgtaa agccccggtc tgatgtgcca
5001 tggtcggaga ccgtcgaaga acttgattgg cgcgaagctc tcgctatact
5051 gaggcatagg cctgcccgta cgtcagaact ggtgactcaa tggctgcaac
5101 tgattggtag gtttacagct gctcatccag ataagcgagc cttaactctt
5151 ctctaccgtt ggttcgtgag agatttgaca catgctacaa aaataaaaaa
5201 aagaaatctt ctggtcctgt tacagcagcc gggcttctgg gggggttatt
5251 cccagagcct ggttggcttg ttaaggacca ctcacctcgc agatatgata
5301 gttagcgaac tagacatagg actgccaggt cctcgggcca cgtctagtcg
5351 ctttgggaca tcccctacct cactggcccc gcactacctc actctgatag
5401 ttccgagtag cgtgcatgtg cagtcgcaaa aggaattgga tttgtggggg
5451 ctgtgcagat ccagtaaata tgctaagcac tattcaaaca tatttcgata
5501 ctacaaactg actcttccta cgttggtgct ttgggcccaa cggctaggtg
5551 ataaacacgt caccgatttc attagatctg tcaccctggg ttcagaaata
5601 ccaaaatatg acccgcatgc gcgtctattc acaagtaacg gggtgtcagt
5651 aggaatgtta ataaggataa gagtacgaca ttttacccac agagtgcttc
5701 gaagagagac acctaagtgt atccccgtaa tcgtcgggct atatcgggag
5751 cagacactat ccgttccgga gagtgttcgt ctatcggaac ctgacaaaat
5801 actattaagc ctacaacggg cgtcgggtta ctcactgaat ctagttaaga
5851 agatattaca gatcactagg aaaccagtgg accatccggt ggacgcgagg
5901 ttctcacagg cattccctaa caactggagc gacttggcta gaacggctgg
5951 cacctttttg ttgactgtac cggcttagga ggtttcagga gacaatgctg
6001 accttgtgcc tgagcgtttg ggcttcaacc atagcagctg gcttcacgca
6051 atttttaggt caaggaaatt tctcctttgc gtagtagcat agctgttcaa
6101 agaaagaaaa agaaatactg gtaattaccg cacacgatcg gtgggtcgac
6151 cagcataggg tggtgtgcgg ttcgagaacg gggctggcct tagtaccgtc
6201 ataacacctg gacacgtgta gaaactgtcc cccctgtaga ctccgttgcc
6251 tgtaggaggc agcgtacgag ggggtcg