Sequence of DPV Giardia lamblia virus
Gardiavirus genomic sequence.
ACC No: L13218
Dated: 2000-03-04 | Length: 6277 | CRC: -1822262855
!!NA_SEQUENCE 1.0 ID GLCG standard; RNA; VRL; 6277 BP. XX AC L13218; XX SV L13218.1 XX DT 04-JAN-1994 (Rel. 38, Created) DT 04-MAR-2000 (Rel. 63, Last updated, Version 7) XX DE Gardiavirus genomic sequence. XX KW . XX OS Giardiavirus sp. OC Viruses; dsRNA viruses; Totiviridae; Giardiavirus. XX RN [1] RP 1-6099 RX MEDLINE; 93391401. RA Wang A.L., Yang H.M., Shen K.A., Wang C.C.; RT "Giardiavirus double-stranded RNA genome encodes a capsid polypeptide and a RT gag-pol-like fusion protein by a translation frameshift"; RL Proc. Natl. Acad. Sci. U.S.A. 90(18):8595-8599(1993). XX RN [2] RP 6060-6277 RX MEDLINE; 95309710. RA Wu C.H., Wang C.C., Yang H.M., Wang A.L.; RT "Sequences at four termini of the giardiavirus double-stranded RNA"; RL Gene 158(1):129-131(1995). XX RN [3] RP 1-6099 RA Wang A.L.; RT ; RL Submitted (28-OCT-1993) to the EMBL/GenBank/DDBJ databases. RL Alice L. Wang, Dept. of Pharmaceutical Chemistry, University of California, RL San Francisco, CA 94143-0446, USA XX RN [4] RP 6100-6277 RA Wang A.L.; RT ; RL Submitted (08-NOV-1994) to the EMBL/GenBank/DDBJ databases. RL Alice L. Wang, Dept. of Pharmaceutical Chemistry, University of California, RL San Francisco, CA 94143-0446, USA XX RN [5] RP 1-6277 RA Yu D.; RT ; RL Submitted (15-MAR-1996) to the EMBL/GenBank/DDBJ databases. RL DeChao Yu, School of Pharmacy, University of California, San Francisco, CA RL 94143, USA XX DR SPTREMBL; Q67652; Q67652. DR SPTREMBL; Q67653; Q67653. XX CC On Jun 4, 1996 this sequence version replaced gi:576675. XX FH Key Location/Qualifiers FH FT source 1. .6277 FT /db_xref="taxon:37134" FT /organism="Giardiavirus sp." FT /specific_host="Portland 1" FT CDS 367. .3027 FT /codon_start=1 FT /db_xref="SPTREMBL:Q67652" FT /note="ORF1" FT /product="capsid protein" FT /protein_id="AAB01578.1" FT /translation="MVWGTGYGNPSPLNPYGFASLHRGGLNPLILAPENITFDTLNTHN FT DHEETHGESPEVPKASIAPAGRQNVPVLQQNQENEDNHALGGSEDAKDEREIRFSAIKT FT LYNYYSEGPSTPIMPHLVNRLRGLDALAKIDATLTKVDMNAAYIFALRPTFPYSYGYKQ FT RFSNRRLTTSALCYARTGLSSFLTVDKTYTSNSPLKGGSRGWPIFNVDVSSHVAEPHMR FT TLSPIGLEVFNLATSQFSKTLLTASSKVFTQSLYTADILSIFGEVFLPHVMQPVSNYTP FT ILVRALLALIHILGPGSGNCSLSSSIFESSIPQFLTVSHSTNMSNRTRYCLHTRSAYKD FT MFRNGIPPQSTLPPTLAPEGSSARVLIPEALVTSPMFPWLLILVSSGPQFFLYSKDASI FT NTVDIGSRGRITSPIPDVAKLDLHRLWNLFRFDGYRYIDVVIVGADRDYVWPYQNGVYV FT HGGKGPNGTGNYGNADVHDGIGTIFSSFNNNVNVQTSDLMLGLLTLWNHITTTYATEEE FT VTMAIKIAAAFALVYPVQPIVYSGCPKAFQRHTSYYQPSSENCYATDTAEVKSVWDTVE FT LSVQVNNAMVLGMTLPFGQPTLSSAQWYNNIDKAEISMFKVGNLPLQNLDYLSLDMMEF FT YAPTTGQLYDIRSDNLILSAHRTVNLGIGYTALADFFAYLASVPAQSFYHDRMVTSPIS FT KQTYSVYERFIERFIDDFVGWDRCDLFNLDTLLGAKHIAGVASSPIPWHCSLQRCPLPI FT IMHYTGLTFGQEHITVRDVAGVEGLQQIVMRDFQGRIVVERLGTAAPSRIAVKLDWSRL FT SAWYSDTTCAIPLSDRVMEIVNYAAIWDPTQERHAQVSCTHTLAPISFRALTCLSLYSI FT RVSTLHHLMTTRAKL" FT CDS <2805. .5978 FT /codon_start=1 FT /db_xref="SPTREMBL:Q67653" FT /note="ORF2; translated by -1 ribosome frameshift" FT /product="gag-pol fusion protein" FT /protein_id="AAB01579.1" FT /translation="CLVLRHNLRHPFIRSCDGDRQLRGNMGSYTGKTRTGFVYTYFSPN FT FLSSFNVSEPIFNTSINLTPPYDDTSQAVIQNLSMPQMLSFDPYYESTFYVVSADNEWI FT PTSGPAWKVPYLENVVKRSGRRLLAELRIASNNGSGDRTFLTTCKTRKGRHFTYFSAAL FT GGKILEFVCAPLSSISLQGGQTIYAPIQLQDVIPVRKEDPVPGSIYAVFKFFSEPKAWE FT ARALKSYKVRFQDLPSHIVISELKERAARSYIGSRGYVDTGFKALDIYIDILSQMELPK FT YIHEFLILLRGKVCEVSRLYKKEQVFVILLTVFSELTAIVRHRGNKSTGSMGRMWTLLS FT DFETLLGKVSYKNPSIIEEQVVPWLTSDPIPRTPDFYSTYFKTAVQFMHRTFVPVTLRS FT APPLTFHEYCGRPELWGTTGSGYIGYGKRSFNKWSIYGAYPTEEIYRLALYGDNPPLKP FT LEKPELTKVRAVISASLQSYILMSYLEYIMADTIVDKAFTTTLMNDRQLENLERHMMTM FT TGGVRVPVDQSNFDRQPDLVQIGIWQQLLFHLASASAPYRARDSVSLVISRLASTTTFP FT NLKVRMSDGDKRVLHGLPSGWKWTALLGALINVTQLLTMAELSNTLASLRSTVVQGDDI FT ALSMTDREQATQLVDTYARQGFEVNPKKFWISPDRDEFLRRVATPGIVAGYPARMMIKL FT LYQLTEPEEPSHYISMLPKLAKVPNVVQEHVKPRSDVPWSETVEELDWREALAILRHRP FT ARTSELVTQWLQLIGRFTAAHPDKRALTLLYRWFVRDLTHATKIKKRNLLVLLQQPGFW FT GGYSQSLVGLLRTTHLADMIVSELDIGLPGPRATSSRFGTSPTSLAPHYLTLIVPSSVH FT VQSQKELDLWGLCRSSKYAKHYSNIFRYYKLTLPTLVLWAQRLGDKHVTDFIRSVTLGS FT EIPKYDPHARLFTSNGVSVGMLIRIRVRHFTHRVLRRETPKCIPVIVGLYREQTLSVPE FT SVRLSEPDKILLSLQRASGYSLNLVKKILQITRKPVDHPVDARFSQAFPNNWSDLARTA FT GTFLLTVPA" XX SQ Sequence 6277 BP; 1606 A; 1576 C; 1565 G; 1530 T; 0 other; L13218 Length: 6277 December 21, 2001 15:46 Type: N Check: 8655 .. 1 ggaaggagtg ccaggccatt accttccgcc cctgcctaac aaaactggct 51 cgccagaggc gggggggcgt ggtagacggt atgtctaggt ccagagaaag 101 cggccgctgt taggctgcta gacttcgcca cgcttacacc attgagaaca 151 cataggtggt gtaatattat gtgtttggct gcgtgtgtca cgagcacgat 201 ctatggggga atctaaccca ggtggtgttg tgtatgatga ggtacaagcc 251 cgtcaacacc acaggtggag agggacagga gtctcatttc ccctccaaaa 301 aacagcagtg gtccgcccct catgccctat gaaacattag ggggccgaca 351 ctagtgggca agcccgatgg tgtgggggac tggatatggg aaccccagtc 401 cgttaaaccc gtacggcttc gccagcctac accggggggg gcttaatccc 451 cttattttgg cacctgaaaa tattactttt gacactttaa acacacacaa 501 tgatcacgag gagacccatg gagagtctcc agaggttcct aaggcctcga 551 tcgcgcctgc cgggaggcag aatgtcccgg ttctccaaca aaatcaagaa 601 aacgaagata atcacgcgct gggcggtagc gaggacgcca aagatgagcg 651 cgaaatacga ttctcagcca taaaaactct ctacaattat tactcagagg 701 gtccttcgac cccaattatg ccgcatttag ttaacaggtt acgtggatta 751 gatgccctgg ccaagataga cgcgacgctg accaaggtgg atatgaacgc 801 ggcctacata ttcgccctga gaccgacttt tccgtattcg tatgggtata 851 aacagcgctt cagtaacagg agattaacca ctagtgcgct ttgctacgca 901 aggacgggtc tatcctcatt tctgaccgtc gacaaaacgt acacatctaa 951 ctctccatta aaagggggct ctagagggtg gcccattttc aacgtggatg 1001 tttcatcaca cgtggcggag cctcacatga ggacattgtc acctatcggt 1051 cttgaagtat tcaatctggc tacgtctcaa ttttcgaaaa ctctattaac 1101 tgcatcatcg aaagtcttca cgcaatcgct ctacactgct gacatactat 1151 cgatctttgg tgaggtgttc ctgccacacg tgatgcaacc ggtctcaaac 1201 tacactccaa tacttgtgag ggcactattg gccttgatcc acatactggg 1251 gccaggatct ggtaattgct cactttcatc gtctatcttc gagagctcaa 1301 ttccacaatt ccttacggta agtcatagta cgaacatgtc gaatagaacg 1351 aggtactgct tacatacgag gtctgcttac aaggatatgt tcaggaacgg 1401 tatcccacct cagtcgacgt tgccaccgac gctcgcgccg gaggggtcct 1451 ctgctcgggt tttaatccca gaggccctag tgaccagccc tatgtttcca 1501 tggttactta tcttagtctc gagcggccca cagttcttct tgtattcaaa 1551 ggacgctagt attaataccg tagacatcgg ttcgaggggg aggattacat 1601 caccaatccc tgacgtcgcc aagcttgatc tccacagact ctggaatctc 1651 ttccgttttg atggttaccg ctacatcgac gtggtcatag tgggcgcgga 1701 tagagattac gtgtggccct atcaaaatgg cgtgtatgta cacggcggca 1751 agggacccaa tggtactggc aactacggga acgctgacgt tcatgacgga 1801 atagggacga tattttcgtc tttcaacaac aatgttaacg tgcaaacgtc 1851 cgacctcatg ctgggcctat tgaccctgtg gaaccacata acgactacgt 1901 acgctactga ggaggaggtc accatggcga ttaagattgc agcggctttt 1951 gccctcgtct acccagtaca gcctattgtc tactccggtt gcccgaaagc 2001 ttttcagaga cacacgtcat actaccagcc ctcatcggag aactgctacg 2051 caaccgacac ggctgaagtc aagagcgtgt gggatacggt cgagcttagc 2101 gtacaggtta ataacgctat ggtactaggt atgacactac cgtttggcca 2151 acctacactt agcagtgcac aatggtataa taacatcgat aaggccgaga 2201 tctctatgtt taaggtcggc aatctaccgt tacagaacct cgattatcta 2251 tctctcgata tgatggaatt ctacgctcct acgacaggac aactgtacga 2301 catacgtagt gataacctga tcttgagcgc ccataggacg gtgaacctcg 2351 gaataggcta cacagctctg gcagatttct tcgcttatct agcttcagtt 2401 cctgcccaga gtttttacca cgacaggatg gtcacctcac cgatctcaaa 2451 gcagacgtac tccgtctatg aacgttttat tgaacgtttt attgatgact 2501 tcgtaggctg ggacagatgt gacctgttca accttgatac attgttaggt 2551 gcaaaacaca tagccggggt agcctcatct ccaatcccgt ggcactgctc 2601 gctacagaga tgcccactac ccataatcat gcattacaca ggcctcactt 2651 tcggccagga gcatataaca gtcagggacg tcgccggggt tgagggctta 2701 cagcagatcg tcatgaggga cttccagggt cgtatcgtag tagagcgctt 2751 gggcacagct gcaccatcta gaattgcagt caaattagac tggtctaggc 2801 ttagtgcctg gtactcagac acaacctgcg ccatcccttt atccgatcgt 2851 gtgatggaga tcgtcaatta cgcggcaata tgggatccta cacaggaaag 2901 acacgcacag gtttcgtgta cacatacttt agccccaatt tcctttcgag 2951 ctttaacgtg tctgagccta tattcaatac gagtatcaac cttacaccac 3001 cttatgacga cacgagccaa gctgtaattc aaaatttgtc catgccacag 3051 atgctcagct tcgatcccta ctacgagtct acgttctatg tggtctccgc 3101 ggataacgag tggataccga cttcagggcc tgcttggaag gtaccatatc 3151 tggaaaacgt agttaagcgg tctggcaggc gcttgctggc ggagctcagg 3201 atagcatcca ataacgggtc tggagaccgt accttcttga cgacgtgtaa 3251 gacaagaaag ggaaggcatt ttacctactt ctctgctgct ttggggggca 3301 agatcctgga attcgtatgc gctccactgt cgagtatcag tctccagggc 3351 gggcaaacga tctacgctcc gattcagctc caagacgtca taccagtacg 3401 taaagaggat ccagtgccag ggagcatata tgcagtcttt aagttcttct 3451 cagaaccaaa ggcctgggag gcacgtgcgc ttaagtccta caaagtcagg 3501 ttccaagatc tcccaagcca catagtgatt agtgagttga aagagagagc 3551 ggcgagaagc tatatcgggt cgaggggtta tgtcgataca ggttttaagg 3601 ctttggacat ttatatagat attctttccc aaatggagct gccaaagtac 3651 atacacgagt tcttaatttt actcagaggc aaggtgtgtg aagtctcgag 3701 gttgtacaag aaggaacagg tattcgtaat attactaacc gtattctctg 3751 agctcacagc catagtccgc catagaggta acaagtccac ggggtcgatg 3801 gggaggatgt ggactttgtt atcagacttc gagaccttgc ttgggaaggt 3851 gagctataag aacccgagta tcattgagga gcaggttgtt ccctggctaa 3901 cctcagaccc tataccacgt acccctgact tctactctac atatttcaag 3951 acggctgtcc agtttatgca caggacattc gttcccgtca ctctcagaag 4001 tgcccctccg ttaacatttc acgagtactg tgggaggccg gagctctggg 4051 gaaccacggg atccggctac atcggctatg gcaagcgtag ttttaacaaa 4101 tggtcgatct acggagctta tcctaccgag gagatttatc ggctagcact 4151 ctatggagat aatccacccc tcaagccgct ggaaaaaccc gaacttacga 4201 aggtacgtgc tgtaatctcc gcctccctcc aatcgtatat attgatgtct 4251 tacctcgagt acatcatggc agacaccata gttgacaaag cattcactac 4301 aactctgatg aacgacaggc agctagagaa ccttgagcgc cacatgatga 4351 ccatgaccgg aggagtcagg gttccagtgg accagtccaa ttttgatcgc 4401 cagcctgact tggtccaaat aggcatctgg caacagttac tgtttcacct 4451 ggcatctgcg tcagctccgt acagagcccg cgacagtgtc tcattagtca 4501 tatcacgttt agcttcaact acgactttcc caaacctaaa ggtacggatg 4551 tcggacggtg acaaacgtgt gctacacggc ctcccctcgg ggtggaagtg 4601 gaccgctctg ctaggggctc tcatcaatgt gacacaactt ttaaccatgg 4651 cggaattgtc caacactctg gcctcgttga ggtcaacggt ggtgcagggc 4701 gacgatatcg ctctaagtat gactgaccgg gagcaggcca cacagttagt 4751 tgacacttat gcacgtcagg ggttcgaggt caacccgaag aagttctgga 4801 tatcacccga ccgggacgaa ttccttcgga gggtagcaac ccctggtata 4851 gtcgcggggt acccagctag aatgatgatt aaattgttat atcagctgac 4901 ggaacctgaa gagccctcac actacatctc catgttgcca aagttagcga 4951 aggtgcctaa cgtggtccag gagcatgtaa agccccggtc tgatgtgcca 5001 tggtcggaga ccgtcgaaga acttgattgg cgcgaagctc tcgctatact 5051 gaggcatagg cctgcccgta cgtcagaact ggtgactcaa tggctgcaac 5101 tgattggtag gtttacagct gctcatccag ataagcgagc cttaactctt 5151 ctctaccgtt ggttcgtgag agatttgaca catgctacaa aaataaaaaa 5201 aagaaatctt ctggtcctgt tacagcagcc gggcttctgg gggggttatt 5251 cccagagcct ggttggcttg ttaaggacca ctcacctcgc agatatgata 5301 gttagcgaac tagacatagg actgccaggt cctcgggcca cgtctagtcg 5351 ctttgggaca tcccctacct cactggcccc gcactacctc actctgatag 5401 ttccgagtag cgtgcatgtg cagtcgcaaa aggaattgga tttgtggggg 5451 ctgtgcagat ccagtaaata tgctaagcac tattcaaaca tatttcgata 5501 ctacaaactg actcttccta cgttggtgct ttgggcccaa cggctaggtg 5551 ataaacacgt caccgatttc attagatctg tcaccctggg ttcagaaata 5601 ccaaaatatg acccgcatgc gcgtctattc acaagtaacg gggtgtcagt 5651 aggaatgtta ataaggataa gagtacgaca ttttacccac agagtgcttc 5701 gaagagagac acctaagtgt atccccgtaa tcgtcgggct atatcgggag 5751 cagacactat ccgttccgga gagtgttcgt ctatcggaac ctgacaaaat 5801 actattaagc ctacaacggg cgtcgggtta ctcactgaat ctagttaaga 5851 agatattaca gatcactagg aaaccagtgg accatccggt ggacgcgagg 5901 ttctcacagg cattccctaa caactggagc gacttggcta gaacggctgg 5951 cacctttttg ttgactgtac cggcttagga ggtttcagga gacaatgctg 6001 accttgtgcc tgagcgtttg ggcttcaacc atagcagctg gcttcacgca 6051 atttttaggt caaggaaatt tctcctttgc gtagtagcat agctgttcaa 6101 agaaagaaaa agaaatactg gtaattaccg cacacgatcg gtgggtcgac 6151 cagcataggg tggtgtgcgg ttcgagaacg gggctggcct tagtaccgtc 6201 ataacacctg gacacgtgta gaaactgtcc cccctgtaga ctccgttgcc 6251 tgtaggaggc agcgtacgag ggggtcg