Sequence of DPV Giardia lamblia virus

Gardiavirus genomic sequence.

ACC No: L13218

Dated: 2000-03-04 | Length: 6277 | CRC: -1822262855

                !!NA_SEQUENCE 1.0
ID   GLCG       standard; RNA; VRL; 6277 BP.
XX
AC   L13218;
XX
SV   L13218.1
XX
DT   04-JAN-1994 (Rel. 38, Created)
DT   04-MAR-2000 (Rel. 63, Last updated, Version 7)
XX
DE   Gardiavirus genomic sequence.
XX
KW   .
XX
OS   Giardiavirus sp.
OC   Viruses; dsRNA viruses; Totiviridae; Giardiavirus.
XX
RN   [1]
RP   1-6099
RX   MEDLINE; 93391401.
RA   Wang A.L., Yang H.M., Shen K.A., Wang C.C.;
RT   "Giardiavirus double-stranded RNA genome encodes a capsid polypeptide and a
RT   gag-pol-like fusion protein by a translation frameshift";
RL   Proc. Natl. Acad. Sci. U.S.A. 90(18):8595-8599(1993).
XX
RN   [2]
RP   6060-6277
RX   MEDLINE; 95309710.
RA   Wu C.H., Wang C.C., Yang H.M., Wang A.L.;
RT   "Sequences at four termini of the giardiavirus double-stranded RNA";
RL   Gene 158(1):129-131(1995).
XX
RN   [3]
RP   1-6099
RA   Wang A.L.;
RT   ;
RL   Submitted (28-OCT-1993) to the EMBL/GenBank/DDBJ databases.
RL   Alice L. Wang, Dept. of Pharmaceutical Chemistry, University of California,
RL   San Francisco, CA 94143-0446, USA
XX
RN   [4]
RP   6100-6277
RA   Wang A.L.;
RT   ;
RL   Submitted (08-NOV-1994) to the EMBL/GenBank/DDBJ databases.
RL   Alice L. Wang, Dept. of Pharmaceutical Chemistry, University of California,
RL   San Francisco, CA 94143-0446, USA
XX
RN   [5]
RP   1-6277
RA   Yu D.;
RT   ;
RL   Submitted (15-MAR-1996) to the EMBL/GenBank/DDBJ databases.
RL   DeChao Yu, School of Pharmacy, University of California, San Francisco, CA
RL   94143, USA
XX
DR   SPTREMBL; Q67652; Q67652.
DR   SPTREMBL; Q67653; Q67653.
XX
CC   On Jun 4, 1996 this sequence version replaced gi:576675.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .6277
FT                   /db_xref="taxon:37134"
FT                   /organism="Giardiavirus sp."
FT                   /specific_host="Portland 1"
FT   CDS             367. .3027
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:Q67652"
FT                   /note="ORF1"
FT                   /product="capsid protein"
FT                   /protein_id="AAB01578.1"
FT                   /translation="MVWGTGYGNPSPLNPYGFASLHRGGLNPLILAPENITFDTLNTHN
FT                   DHEETHGESPEVPKASIAPAGRQNVPVLQQNQENEDNHALGGSEDAKDEREIRFSAIKT
FT                   LYNYYSEGPSTPIMPHLVNRLRGLDALAKIDATLTKVDMNAAYIFALRPTFPYSYGYKQ
FT                   RFSNRRLTTSALCYARTGLSSFLTVDKTYTSNSPLKGGSRGWPIFNVDVSSHVAEPHMR
FT                   TLSPIGLEVFNLATSQFSKTLLTASSKVFTQSLYTADILSIFGEVFLPHVMQPVSNYTP
FT                   ILVRALLALIHILGPGSGNCSLSSSIFESSIPQFLTVSHSTNMSNRTRYCLHTRSAYKD
FT                   MFRNGIPPQSTLPPTLAPEGSSARVLIPEALVTSPMFPWLLILVSSGPQFFLYSKDASI
FT                   NTVDIGSRGRITSPIPDVAKLDLHRLWNLFRFDGYRYIDVVIVGADRDYVWPYQNGVYV
FT                   HGGKGPNGTGNYGNADVHDGIGTIFSSFNNNVNVQTSDLMLGLLTLWNHITTTYATEEE
FT                   VTMAIKIAAAFALVYPVQPIVYSGCPKAFQRHTSYYQPSSENCYATDTAEVKSVWDTVE
FT                   LSVQVNNAMVLGMTLPFGQPTLSSAQWYNNIDKAEISMFKVGNLPLQNLDYLSLDMMEF
FT                   YAPTTGQLYDIRSDNLILSAHRTVNLGIGYTALADFFAYLASVPAQSFYHDRMVTSPIS
FT                   KQTYSVYERFIERFIDDFVGWDRCDLFNLDTLLGAKHIAGVASSPIPWHCSLQRCPLPI
FT                   IMHYTGLTFGQEHITVRDVAGVEGLQQIVMRDFQGRIVVERLGTAAPSRIAVKLDWSRL
FT                   SAWYSDTTCAIPLSDRVMEIVNYAAIWDPTQERHAQVSCTHTLAPISFRALTCLSLYSI
FT                   RVSTLHHLMTTRAKL"
FT   CDS             <2805. .5978
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:Q67653"
FT                   /note="ORF2; translated by -1 ribosome frameshift"
FT                   /product="gag-pol fusion protein"
FT                   /protein_id="AAB01579.1"
FT                   /translation="CLVLRHNLRHPFIRSCDGDRQLRGNMGSYTGKTRTGFVYTYFSPN
FT                   FLSSFNVSEPIFNTSINLTPPYDDTSQAVIQNLSMPQMLSFDPYYESTFYVVSADNEWI
FT                   PTSGPAWKVPYLENVVKRSGRRLLAELRIASNNGSGDRTFLTTCKTRKGRHFTYFSAAL
FT                   GGKILEFVCAPLSSISLQGGQTIYAPIQLQDVIPVRKEDPVPGSIYAVFKFFSEPKAWE
FT                   ARALKSYKVRFQDLPSHIVISELKERAARSYIGSRGYVDTGFKALDIYIDILSQMELPK
FT                   YIHEFLILLRGKVCEVSRLYKKEQVFVILLTVFSELTAIVRHRGNKSTGSMGRMWTLLS
FT                   DFETLLGKVSYKNPSIIEEQVVPWLTSDPIPRTPDFYSTYFKTAVQFMHRTFVPVTLRS
FT                   APPLTFHEYCGRPELWGTTGSGYIGYGKRSFNKWSIYGAYPTEEIYRLALYGDNPPLKP
FT                   LEKPELTKVRAVISASLQSYILMSYLEYIMADTIVDKAFTTTLMNDRQLENLERHMMTM
FT                   TGGVRVPVDQSNFDRQPDLVQIGIWQQLLFHLASASAPYRARDSVSLVISRLASTTTFP
FT                   NLKVRMSDGDKRVLHGLPSGWKWTALLGALINVTQLLTMAELSNTLASLRSTVVQGDDI
FT                   ALSMTDREQATQLVDTYARQGFEVNPKKFWISPDRDEFLRRVATPGIVAGYPARMMIKL
FT                   LYQLTEPEEPSHYISMLPKLAKVPNVVQEHVKPRSDVPWSETVEELDWREALAILRHRP
FT                   ARTSELVTQWLQLIGRFTAAHPDKRALTLLYRWFVRDLTHATKIKKRNLLVLLQQPGFW
FT                   GGYSQSLVGLLRTTHLADMIVSELDIGLPGPRATSSRFGTSPTSLAPHYLTLIVPSSVH
FT                   VQSQKELDLWGLCRSSKYAKHYSNIFRYYKLTLPTLVLWAQRLGDKHVTDFIRSVTLGS
FT                   EIPKYDPHARLFTSNGVSVGMLIRIRVRHFTHRVLRRETPKCIPVIVGLYREQTLSVPE
FT                   SVRLSEPDKILLSLQRASGYSLNLVKKILQITRKPVDHPVDARFSQAFPNNWSDLARTA
FT                   GTFLLTVPA"
XX
SQ   Sequence 6277 BP; 1606 A; 1576 C; 1565 G; 1530 T; 0 other;

L13218  Length: 6277  December 21, 2001 15:46  Type: N  Check: 8655  ..

       1  ggaaggagtg ccaggccatt accttccgcc cctgcctaac aaaactggct
      51  cgccagaggc gggggggcgt ggtagacggt atgtctaggt ccagagaaag
     101  cggccgctgt taggctgcta gacttcgcca cgcttacacc attgagaaca
     151  cataggtggt gtaatattat gtgtttggct gcgtgtgtca cgagcacgat
     201  ctatggggga atctaaccca ggtggtgttg tgtatgatga ggtacaagcc
     251  cgtcaacacc acaggtggag agggacagga gtctcatttc ccctccaaaa
     301  aacagcagtg gtccgcccct catgccctat gaaacattag ggggccgaca
     351  ctagtgggca agcccgatgg tgtgggggac tggatatggg aaccccagtc
     401  cgttaaaccc gtacggcttc gccagcctac accggggggg gcttaatccc
     451  cttattttgg cacctgaaaa tattactttt gacactttaa acacacacaa
     501  tgatcacgag gagacccatg gagagtctcc agaggttcct aaggcctcga
     551  tcgcgcctgc cgggaggcag aatgtcccgg ttctccaaca aaatcaagaa
     601  aacgaagata atcacgcgct gggcggtagc gaggacgcca aagatgagcg
     651  cgaaatacga ttctcagcca taaaaactct ctacaattat tactcagagg
     701  gtccttcgac cccaattatg ccgcatttag ttaacaggtt acgtggatta
     751  gatgccctgg ccaagataga cgcgacgctg accaaggtgg atatgaacgc
     801  ggcctacata ttcgccctga gaccgacttt tccgtattcg tatgggtata
     851  aacagcgctt cagtaacagg agattaacca ctagtgcgct ttgctacgca
     901  aggacgggtc tatcctcatt tctgaccgtc gacaaaacgt acacatctaa
     951  ctctccatta aaagggggct ctagagggtg gcccattttc aacgtggatg
    1001  tttcatcaca cgtggcggag cctcacatga ggacattgtc acctatcggt
    1051  cttgaagtat tcaatctggc tacgtctcaa ttttcgaaaa ctctattaac
    1101  tgcatcatcg aaagtcttca cgcaatcgct ctacactgct gacatactat
    1151  cgatctttgg tgaggtgttc ctgccacacg tgatgcaacc ggtctcaaac
    1201  tacactccaa tacttgtgag ggcactattg gccttgatcc acatactggg
    1251  gccaggatct ggtaattgct cactttcatc gtctatcttc gagagctcaa
    1301  ttccacaatt ccttacggta agtcatagta cgaacatgtc gaatagaacg
    1351  aggtactgct tacatacgag gtctgcttac aaggatatgt tcaggaacgg
    1401  tatcccacct cagtcgacgt tgccaccgac gctcgcgccg gaggggtcct
    1451  ctgctcgggt tttaatccca gaggccctag tgaccagccc tatgtttcca
    1501  tggttactta tcttagtctc gagcggccca cagttcttct tgtattcaaa
    1551  ggacgctagt attaataccg tagacatcgg ttcgaggggg aggattacat
    1601  caccaatccc tgacgtcgcc aagcttgatc tccacagact ctggaatctc
    1651  ttccgttttg atggttaccg ctacatcgac gtggtcatag tgggcgcgga
    1701  tagagattac gtgtggccct atcaaaatgg cgtgtatgta cacggcggca
    1751  agggacccaa tggtactggc aactacggga acgctgacgt tcatgacgga
    1801  atagggacga tattttcgtc tttcaacaac aatgttaacg tgcaaacgtc
    1851  cgacctcatg ctgggcctat tgaccctgtg gaaccacata acgactacgt
    1901  acgctactga ggaggaggtc accatggcga ttaagattgc agcggctttt
    1951  gccctcgtct acccagtaca gcctattgtc tactccggtt gcccgaaagc
    2001  ttttcagaga cacacgtcat actaccagcc ctcatcggag aactgctacg
    2051  caaccgacac ggctgaagtc aagagcgtgt gggatacggt cgagcttagc
    2101  gtacaggtta ataacgctat ggtactaggt atgacactac cgtttggcca
    2151  acctacactt agcagtgcac aatggtataa taacatcgat aaggccgaga
    2201  tctctatgtt taaggtcggc aatctaccgt tacagaacct cgattatcta
    2251  tctctcgata tgatggaatt ctacgctcct acgacaggac aactgtacga
    2301  catacgtagt gataacctga tcttgagcgc ccataggacg gtgaacctcg
    2351  gaataggcta cacagctctg gcagatttct tcgcttatct agcttcagtt
    2401  cctgcccaga gtttttacca cgacaggatg gtcacctcac cgatctcaaa
    2451  gcagacgtac tccgtctatg aacgttttat tgaacgtttt attgatgact
    2501  tcgtaggctg ggacagatgt gacctgttca accttgatac attgttaggt
    2551  gcaaaacaca tagccggggt agcctcatct ccaatcccgt ggcactgctc
    2601  gctacagaga tgcccactac ccataatcat gcattacaca ggcctcactt
    2651  tcggccagga gcatataaca gtcagggacg tcgccggggt tgagggctta
    2701  cagcagatcg tcatgaggga cttccagggt cgtatcgtag tagagcgctt
    2751  gggcacagct gcaccatcta gaattgcagt caaattagac tggtctaggc
    2801  ttagtgcctg gtactcagac acaacctgcg ccatcccttt atccgatcgt
    2851  gtgatggaga tcgtcaatta cgcggcaata tgggatccta cacaggaaag
    2901  acacgcacag gtttcgtgta cacatacttt agccccaatt tcctttcgag
    2951  ctttaacgtg tctgagccta tattcaatac gagtatcaac cttacaccac
    3001  cttatgacga cacgagccaa gctgtaattc aaaatttgtc catgccacag
    3051  atgctcagct tcgatcccta ctacgagtct acgttctatg tggtctccgc
    3101  ggataacgag tggataccga cttcagggcc tgcttggaag gtaccatatc
    3151  tggaaaacgt agttaagcgg tctggcaggc gcttgctggc ggagctcagg
    3201  atagcatcca ataacgggtc tggagaccgt accttcttga cgacgtgtaa
    3251  gacaagaaag ggaaggcatt ttacctactt ctctgctgct ttggggggca
    3301  agatcctgga attcgtatgc gctccactgt cgagtatcag tctccagggc
    3351  gggcaaacga tctacgctcc gattcagctc caagacgtca taccagtacg
    3401  taaagaggat ccagtgccag ggagcatata tgcagtcttt aagttcttct
    3451  cagaaccaaa ggcctgggag gcacgtgcgc ttaagtccta caaagtcagg
    3501  ttccaagatc tcccaagcca catagtgatt agtgagttga aagagagagc
    3551  ggcgagaagc tatatcgggt cgaggggtta tgtcgataca ggttttaagg
    3601  ctttggacat ttatatagat attctttccc aaatggagct gccaaagtac
    3651  atacacgagt tcttaatttt actcagaggc aaggtgtgtg aagtctcgag
    3701  gttgtacaag aaggaacagg tattcgtaat attactaacc gtattctctg
    3751  agctcacagc catagtccgc catagaggta acaagtccac ggggtcgatg
    3801  gggaggatgt ggactttgtt atcagacttc gagaccttgc ttgggaaggt
    3851  gagctataag aacccgagta tcattgagga gcaggttgtt ccctggctaa
    3901  cctcagaccc tataccacgt acccctgact tctactctac atatttcaag
    3951  acggctgtcc agtttatgca caggacattc gttcccgtca ctctcagaag
    4001  tgcccctccg ttaacatttc acgagtactg tgggaggccg gagctctggg
    4051  gaaccacggg atccggctac atcggctatg gcaagcgtag ttttaacaaa
    4101  tggtcgatct acggagctta tcctaccgag gagatttatc ggctagcact
    4151  ctatggagat aatccacccc tcaagccgct ggaaaaaccc gaacttacga
    4201  aggtacgtgc tgtaatctcc gcctccctcc aatcgtatat attgatgtct
    4251  tacctcgagt acatcatggc agacaccata gttgacaaag cattcactac
    4301  aactctgatg aacgacaggc agctagagaa ccttgagcgc cacatgatga
    4351  ccatgaccgg aggagtcagg gttccagtgg accagtccaa ttttgatcgc
    4401  cagcctgact tggtccaaat aggcatctgg caacagttac tgtttcacct
    4451  ggcatctgcg tcagctccgt acagagcccg cgacagtgtc tcattagtca
    4501  tatcacgttt agcttcaact acgactttcc caaacctaaa ggtacggatg
    4551  tcggacggtg acaaacgtgt gctacacggc ctcccctcgg ggtggaagtg
    4601  gaccgctctg ctaggggctc tcatcaatgt gacacaactt ttaaccatgg
    4651  cggaattgtc caacactctg gcctcgttga ggtcaacggt ggtgcagggc
    4701  gacgatatcg ctctaagtat gactgaccgg gagcaggcca cacagttagt
    4751  tgacacttat gcacgtcagg ggttcgaggt caacccgaag aagttctgga
    4801  tatcacccga ccgggacgaa ttccttcgga gggtagcaac ccctggtata
    4851  gtcgcggggt acccagctag aatgatgatt aaattgttat atcagctgac
    4901  ggaacctgaa gagccctcac actacatctc catgttgcca aagttagcga
    4951  aggtgcctaa cgtggtccag gagcatgtaa agccccggtc tgatgtgcca
    5001  tggtcggaga ccgtcgaaga acttgattgg cgcgaagctc tcgctatact
    5051  gaggcatagg cctgcccgta cgtcagaact ggtgactcaa tggctgcaac
    5101  tgattggtag gtttacagct gctcatccag ataagcgagc cttaactctt
    5151  ctctaccgtt ggttcgtgag agatttgaca catgctacaa aaataaaaaa
    5201  aagaaatctt ctggtcctgt tacagcagcc gggcttctgg gggggttatt
    5251  cccagagcct ggttggcttg ttaaggacca ctcacctcgc agatatgata
    5301  gttagcgaac tagacatagg actgccaggt cctcgggcca cgtctagtcg
    5351  ctttgggaca tcccctacct cactggcccc gcactacctc actctgatag
    5401  ttccgagtag cgtgcatgtg cagtcgcaaa aggaattgga tttgtggggg
    5451  ctgtgcagat ccagtaaata tgctaagcac tattcaaaca tatttcgata
    5501  ctacaaactg actcttccta cgttggtgct ttgggcccaa cggctaggtg
    5551  ataaacacgt caccgatttc attagatctg tcaccctggg ttcagaaata
    5601  ccaaaatatg acccgcatgc gcgtctattc acaagtaacg gggtgtcagt
    5651  aggaatgtta ataaggataa gagtacgaca ttttacccac agagtgcttc
    5701  gaagagagac acctaagtgt atccccgtaa tcgtcgggct atatcgggag
    5751  cagacactat ccgttccgga gagtgttcgt ctatcggaac ctgacaaaat
    5801  actattaagc ctacaacggg cgtcgggtta ctcactgaat ctagttaaga
    5851  agatattaca gatcactagg aaaccagtgg accatccggt ggacgcgagg
    5901  ttctcacagg cattccctaa caactggagc gacttggcta gaacggctgg
    5951  cacctttttg ttgactgtac cggcttagga ggtttcagga gacaatgctg
    6001  accttgtgcc tgagcgtttg ggcttcaacc atagcagctg gcttcacgca
    6051  atttttaggt caaggaaatt tctcctttgc gtagtagcat agctgttcaa
    6101  agaaagaaaa agaaatactg gtaattaccg cacacgatcg gtgggtcgac
    6151  cagcataggg tggtgtgcgg ttcgagaacg gggctggcct tagtaccgtc
    6201  ataacacctg gacacgtgta gaaactgtcc cccctgtaga ctccgttgcc
    6251  tgtaggaggc agcgtacgag ggggtcg