Sequence of DPV Carnation ringspot virus
Carnation ringspot virus fusion protein polymerase (p88K), p27K, p57K, capsid protein (p37K) and p11K genes, complete cds.
ACC No: L18870
Dated: 2005-04-17 | Length: 3840 | CRC: -1198505456
!!NA_SEQUENCE 1.0
ID CIRRNA1A standard; genomic RNA; VRL; 3840 BP.
XX
AC L18870;
XX
SV L18870.2
XX
DT 11-JUN-1993 (Rel. 36, Created)
DT 17-APR-2005 (Rel. 83, Last updated, Version 7)
XX
DE Carnation ringspot virus fusion protein polymerase (p88K), p27K, p57K,
DE capsid protein (p37K) and p11K genes, complete cds.
XX
KW .
XX
OS Carnation ringspot virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Dianthovirus.
XX
RN [1]
RP 1-3840
RX MEDLINE; 94157471.
RX PUBMED; 8113736.
RA Ryabov E.V., Generozov E.V., Kendall T.L., Lommel S.A., Zavriev S.K.;
RT "Nucleotide sequence of carnation ringspot dianthovirus RNA-1";
RL J. Gen. Virol. 75:243-247(1994).
XX
RN [2]
RP 1-3740
RA Lommel S.A.;
RT ;
RL Submitted (26-JUL-1993) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, North Carolina State University, Box 7616, Raleigh, NC
RL 27695, USA
XX
RN [3]
RC Sequence updated by submitter
RP 1-3840
RA Sit T.L., Lommel S.A.;
RT ;
RL Submitted (11-MAR-1999) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, North Carolina State University, Box 7616, Raleigh, NC
RL 27695, USA
XX
CC On Mar 11, 1999 this sequence version replaced gi:304449.
XX
FH Key Location/Qualifiers
FH
FT source 1. .3840
FT /db_xref="taxon:12268"
FT /mol_type="genomic RNA"
FT /organism="Carnation ringspot virus"
FT 5'UTR 1. .57
FT misc_feature 58. .>2366
FT /note="putative CDS; through -1 frameshift"
FT /function="viral RNA dependent RNA polymerase"
FT /product="p88K fusion protein"
FT CDS 58. .768
FT /codon_start=1
FT /db_xref="UniProt/TrEMBL:Q66096"
FT /product="p27K protein"
FT /protein_id="AAA20211.1"
FT /translation="MAIFELFSFDIDKLLVWVSKFSPGKILSAICRLGLDSWNNFRKWF
FT WGLNFDKHEWAVDHFMPLMPRFSSDMDEVAKRIVTPKSKPKLEDCLEIDTAVEECFNEE
FT CFEPQEDGSMKLKRVAAPQQIKRVRTGMIEDAISAVEARIRNRHMIMGDDMGLVDEAAV
FT RATAMDICGEYKINEHHTRCIIYAAAYRAMTPDQESIDATKMAYNPKSQARRDLVSILR
FT KNISFGGFKSLEDF"
FT misc_feature 759. .765
FT /function="frameshift element"
FT stem_loop 759. .851
FT CDS <963. .2366
FT /codon_start=1
FT /db_xref="GOA:Q66097"
FT /db_xref="InterPro:IPR002166"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="InterPro:IPR007095"
FT /db_xref="UniProt/TrEMBL:Q66097"
FT /product="p57K protein"
FT /protein_id="AAA20212.1"
FT /translation="RVFRVKNETGEFVVPPQPSKGAFDSISYFREAWKKKLYSKGPVVK
FT SSIDDVVACYSSEKKKLYQKGAATLSHRPLHWRDSKVRAFIKVEKLECDKKAPVPRTIQ
FT PRSKRYNLCIGRYLRLNEKRMLDAIDAVFGEKTVLSGLDNKAQGRAIAKKWSKYESPIG
FT IGLDASRFDQHCSKDALKFEHSFYRECFPDDKTSPDLLDWQLENEGSALMPTESLVKYR
FT TRCRMSGDINTGLGNKILMCSMVHAYLKEVGVNASLANNGDDCVLFCEKGDFNRINDSL
FT REWFLCRGFNMVVEEPVECLERVVFCRSQPVCVATKWAMVRQLGSLSRDCFSTQNWLNP
FT TTFRDAMNALGQCNGIINDGVPVHMAQAKRMYAAGGNRKFDLKALHKQMEYSWRDRLGA
FT RTNLLWSEVEDSTRLSYFRAFGIEPAVQRIVEGYFSESKISEEGRQTNFLPTHYSRLHK
FT DLLVPRYLN"
FT CDS 2367. .3404
FT /codon_start=1
FT /db_xref="GOA:Q66098"
FT /db_xref="HSSP:2TBV"
FT /db_xref="InterPro:IPR000937"
FT /db_xref="UniProt/TrEMBL:Q66098"
FT /product="p37K protein"
FT /protein_id="AAA20213.1"
FT /translation="MTSRQSRKSKMALVPKQRQNLARTVKTVKIPYATTQIVTTSNPPK
FT KGQIKVSGRQLFMSLITSSSFVVNNGLPTPSLLSLNPSNQYLFPSLAYEAANYDLYRFA
FT KLRLSYVHDTNATVSGRVSLMWDRDSQDVPPNSRVSIPQCTKSVSTAVYESCAIDLPID
FT DVWRFVRDTDVVDRKLSDYGQIFTAVHSGSTTDEVGDVYLDYTIELKDRQPTASMVQTA
FT YWDVSGVLAKSEGPRYFSPSSDVTFTSTMAAISLQLSGIFNVQVVVTCTTAGTLVVGPN
FT ISVIGAMYSQFTTPRYFAQPVLACTGVPNGTPSVSMTGFAGITRITLVITRLPPETRCR
FT NRQFP"
FT CDS 3495. .3797
FT /codon_start=1
FT /db_xref="UniProt/TrEMBL:Q66099"
FT /product="p11K protein"
FT /protein_id="AAA20214.2"
FT /translation="MLSSYLRRREPTRHKSVIRILRNRQSATLVGGGRRVGFSLGVVPK
FT DNLPTWWRHQACCGVIESRTLVLAVVKFVSVLFFCLYVGSVCVTRTDGSRKPAVK"
XX
SQ Sequence 3840 BP; 1037 A; 903 C; 972 G; 928 T; 0 other;
L18870 Length: 3840 May 10, 2005 10:09 Type: N Check: 2930 ..
1 actctaacca agttattcaa cttatccatt tgactcatac acactcctta
51 ctactcaatg gctatttttg agttgttctc tttcgatatt gataagttgt
101 tggtgtgggt gtccaagttt agtcctggaa agattttgtc ggctatttgc
151 cggctgggat tggacagttg gaacaatttc cgaaaatggt tttggggttt
201 gaatttcgac aagcatgaat gggcggtaga ccattttatg cctctcatgc
251 caaggttttc tagtgacatg gatgaagttg caaaacgtat cgtaacccca
301 aaatccaaac ccaaactcga ggactgtctt gagattgaca cagccgttga
351 agaatgcttc aacgaagaat gctttgaacc acaagaagat ggttcaatga
401 aacttaagcg tgtcgccgcc ccgcagcaaa taaaacgtgt gcggacgggc
451 atgatcgaag acgccatctc tgccgtagaa gctagaatca ggaatcgcca
501 catgataatg ggtgacgaca tgggactagt ggacgaggcc gctgttaggg
551 caaccgccat ggacatctgt ggtgagtaca aaatcaatga acaccacacc
601 aggtgtatca tttatgccgc agcgtatcgt gcgatgactc cggatcaaga
651 atcgattgat gccacaaaaa tggcatacaa tccgaagtca caagcgagaa
701 gagacctggt ttccatcctt cggaagaaca tatctttcgg aggattcaaa
751 tccctcgagg atttttaagt gcccctgtca gttttccggt tgaagatgcc
801 ccctaccaaa tcctcggcat cccggaaatc aaggtagctg acaagcgggc
851 gtctagggtc tgtaagttta aaagggtcgt aggtttgccc agtctgagtg
901 ctggacaatc ggtttgtgtc cacaaaacca gcctacataa tatgatagtt
951 agtttagaac agcgcgtttt ccgtgtaaaa aatgaaacag gagaattcgt
1001 tgttcctccc caaccatcca aaggtgcctt cgattcgatt tcttatttca
1051 gggaagcctg gaaaaagaaa ttgtattcca agggaccggt cgtcaaatcc
1101 tcaattgacg acgtggtagc gtgctattct tccgaaaaga agaaattata
1151 tcaaaagggc gctgccacac tgagccatcg cccgttacac tggagggact
1201 ccaaagtccg agctttcatc aaagtcgaaa aattggaatg tgacaagaaa
1251 gcaccagtgc cgcggacgat ccaaccacgc tccaaacgat acaacctttg
1301 tattggtagg tatctgcgcc tcaatgaaaa gaggatgctg gatgccatcg
1351 atgctgtatt cggagaaaag acggtcttgt ccgggttgga caacaaggct
1401 caagggcgtg ccatcgccaa gaaatggtct aagtacgagt cccctattgg
1451 gattggactt gatgcaagtc gattcgatca acactgttcg aaagatgcgc
1501 tcaagttcga acactccttt taccgggagt gttttcctga tgacaagacg
1551 tcgcctgatc tcctggattg gcaactagaa aacgagggaa gtgctttgat
1601 gccaactgag agcttggtaa agtataggac caggtgtcgc atgtcgggcg
1651 acattaacac aggactgggt aacaagatac tcatgtgcag catggtccac
1701 gcttatctga aagaggtagg cgtaaatgct tcgttagcca ataatggtga
1751 cgactgtgta ctcttctgtg agaagggaga cttcaacaga attaacgatt
1801 cgcttcgaga atggttcctg tgccgaggat tcaacatggt agttgaagag
1851 ccggtcgaat gcctcgaaag ggtcgtattt tgtagaagtc aaccggtttg
1901 tgtggccacc aaatgggcaa tggtcagaca attgggaagt ttgtcgcgag
1951 actgcttttc aacacagaat tggttaaacc ccacgacgtt ccgagatgct
2001 atgaatgcgc ttggtcagtg taacggcatc atcaacgatg gtgtcccagt
2051 gcacatggct caggcgaaac gcatgtatgc agcaggaggc aatagaaaat
2101 ttgacctcaa agcactccat aaacagatgg agtacagctg gcgtgataga
2151 ctcggagcga ggacgaacct attgtggagt gaagttgaag acagtacacg
2201 actgtcctac ttcagggcat tcggtataga accggccgtc cagagaatag
2251 tagaaggtta cttttcggaa agcaaaattt ctgaagaggg gcgtcaaaca
2301 aactttttac caacacacta ttctcgactt cacaaggatt tactcgtacc
2351 tcgttatctt aactagatga cgtctagaca atcccgaaaa tccaaaatgg
2401 cgctggtgcc taaacagcgt cagaacctgg ctcggacggt gaaaactgtc
2451 aaaatacctt acgcaaccac ccagatagtc accactagca acccaccgaa
2501 gaagggacaa atcaaagtca gtggaagaca attgttcatg tcgctgatta
2551 cctcgtccag ctttgtggtg aacaatggcc tgcctactcc cagtttgctc
2601 agtctaaatc ctagtaacca gtacctgttc ccctctctag cttacgaggc
2651 ggcgaactac gacctgtatc gatttgccaa gttgcggctt tcatatgtac
2701 acgacacaaa cgccaccgtg agcggtcgcg tttcactgat gtgggacaga
2751 gactcccaag atgtaccacc caacagtcgg gtttcaatac cccaatgcac
2801 caaatcggtg tctacggctg tgtatgaaag ttgtgccatc gacctcccta
2851 ttgacgatgt ctggaggttt gtaagggata ccgacgtagt ggaccgcaag
2901 ctctccgatt atggacagat cttcacagcc gtccacagtg ggtcaaccac
2951 tgacgaggta ggggacgtgt acctggatta tactattgag ttaaaagaca
3001 gacaacctac tgcatcgatg gtgcagacag catactggga tgtatcaggg
3051 gtcctcgcca aaagtgaggg tcctaggtac ttctccccta gtagtgatgt
3101 gacattcacg agtaccatgg cagccatttc cctgcagttg tcgggcatat
3151 tcaatgtaca ggtggtagtc acttgtacca ctgcaggaac tctggtcgta
3201 ggtcctaata tatcggtaat cggtgccatg tattcccagt tcacaacccc
3251 aaggtatttt gcacagccag tgttggcttg tactggtgtc cccaatggca
3301 ctccgtccgt cagcatgacc ggtttcgccg ggatcacgcg tattactttg
3351 gtaatcacgc gtcttccgcc ggaaacgcgt tgccgtaacc gtcagttccc
3401 gtagccgcca acaaagttgc aagagcgggc gttgctagcc tttgccgacc
3451 ctgcttcctg gcgcagcaaa tccagagaaa aacagagtgt taggatgttg
3501 tcttcttacc ttaggagacg agaacctacg aggcacaagt cagtgatccg
3551 gatcctgaga aacaggcagt ccgcaacctt agtagggggc ggcagacggg
3601 tgggcttcag ccttggggtg gtacccaagg ataacctgcc gacgtggtgg
3651 agacaccagg cgtgttgtgg cgtcatcgaa tcacgaacac ttgtgttggc
3701 cgtagttaaa ttcgtgtcag tccttttctt ttgtttgtat gtggggtcag
3751 tgtgcgtcac acgcaccgac gggagtagaa aacccgccgt caagtaaaaa
3801 cagggaaacg aacaccggtg ggtataaccc ccgggcccct