Sequence of DPV Southern bean mosaic virus
Southern bean mosaic virus p11.5 protein gene, complete cds, p96 protein gene, complete cds, coat protein gene, complete cds.
ACC No: L34672
Dated: 2005-04-17 | Length: 4109 | CRC: 869511537
!!NA_SEQUENCE 1.0 ID MSBP5P standard; genomic RNA; VRL; 4109 BP. XX AC L34672; XX SV L34672.1 XX DT 23-JUL-1994 (Rel. 40, Created) DT 17-APR-2005 (Rel. 83, Last updated, Version 4) XX DE Southern bean mosaic virus p11.5 protein gene, complete cds, p96 protein DE gene, complete cds, coat protein gene, complete cds. XX KW coat protein; p11.5 protein; p96 protein; polymerase; protease. XX OS Southern bean mosaic virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Sobemovirus. XX RN [1] RP 1-4109 RX MEDLINE; 95133162. RX PUBMED; 7831784. RA Othman Y., Hull R.; RT "Nucleotide sequence of the bean strain of southern bean mosaic virus"; RL Virology 206(1):287-297(1995). XX FH Key Location/Qualifiers FH FT source 1. .4109 FT /db_xref="taxon:12139" FT /mol_type="genomic RNA" FT /organism="Southern bean mosaic virus" FT /strain="Bean" FT 5'UTR 1. .92 FT CDS 93. .416 FT /codon_start=1 FT /db_xref="UniProt/TrEMBL:Q83471" FT /product="p11.5 protein" FT /protein_id="AAA66949.1" FT /translation="MSYRFLTVRAFGFTGFHCDATRLLSETEVIDVPTSMTLLARPNSD FT LKLLGPSVKRIVTRFSLDSTFKLTSSITLCVSRLCAESALHPYLSFSASGTSTVVGEAI FT LFL" FT CDS 505. .3090 FT /codon_start=1 FT /db_xref="GOA:Q83472" FT /db_xref="InterPro:IPR001795" FT /db_xref="UniProt/TrEMBL:Q83472" FT /note="putative" FT /function="polymerase, protease" FT /product="p96 protein" FT /protein_id="AAA66950.1" FT /translation="MYHPGRSPSFLITLANVICAAILFDIHRGVTNPAHYPIVAWIPRS FT LLCLVERVIRDIPYKYVRTRLLQRRRLPGYIAQSAVFVPLVYTDLIARMSETAWTTGTG FT YQLMSTGIRNADIVDTSTGSFTESADGYQQSRSVLCRHWPEERLRLAVYSDSEPRSIGP FT PRTVMMRLMVILLFTGHHVWNNSMAAPTALAKAGKQVADSTDWQTPLSCDHRCLICSGA FT CAKTVWSKLGVKATQLVCPSDKDAVTCYGGSSSDNLLSGTGVCSKVDFSSKLTHSCPTA FT AWSEWNTDLLCRGVVGMHVGFEDIGKLNRGVNAFYVSNYLLRSQETLPPELSVIEIPFE FT DVETRSYEFIEVEIKGRGKAKLGKREFAWIPESGKYWADDDDDSLPPPPKVVDGKMVWS FT SAQETVADALNYQRAAGSRPLPPFSTCRLRLQRRRSSLYKRNALRFVGQSACKFRVCRK FT ILQMKSLELLGSSQNCQTSPGPSEAPKQSFTPCYAKQESLIPLESQGILKELVKTSLKA FT ATPPPNPVTVSVEKLVLRQQSTRSLQEERNRRKSTRKSSPGVPPLPPRLNQQRPPLRHL FT ELVALCVTERLFLLSEAEDLLDESPVDLVRRGLCDPVRLFVKQEPHASRKVREGRFRLI FT SSVSLVDQLVERMLFGPQNQLEIAEWEHIPSKPGMGLSLRQQAKSLFDDLRVKHSRCPA FT AEADISGFDWSVQDWELWADVEMIIVLGGFGHKLAKAARNRFSCFMNSVFQLSDGTLIE FT QQLPGIMKRSLDLLTNSRIRCLMAELIGSPWCIAMGDDSVEGWVDGAKDKYMRLDTRAD FT YKPCATTISGRLYEVEFCSHVIRKIDVGWRRGLKLCLNTCLRASGSLRT" FT CDS 3196. .3981 FT /codon_start=1 FT /db_xref="GOA:Q83473" FT /db_xref="HSSP:4SBV" FT /db_xref="InterPro:IPR000937" FT /db_xref="UniProt/TrEMBL:Q83473" FT /evidence=EXPERIMENTAL FT /product="coat protein" FT /protein_id="AAA66951.1" FT /translation="MATRLTKKQLAQAIQNTLPNPPRRKRRAKRRAAQVPKPTQAGVSM FT APIAQGTMVRLREPSLRTAGGVTVLTHSELSTELSVTNAIVITSELVMPYTMGTWLRGV FT AANWSKYSLLSVTYTYLPSCPSTTSGSIHMGFQYDMADTLPVSVNQLSNLRGYVSGQVW FT SGSSGLCYINGTRCLDTANAITTTLDVGQLGKKWYPFKTSTDFTTAVGVNVNIATPLVP FT ARLIIAMLDGSSSTAVSTGRLYVSYTIQLIEPTALALNN" FT 3'UTR 3982. .4109 XX SQ Sequence 4109 BP; 976 A; 1011 C; 1054 G; 1068 T; 0 other; L34672 Length: 4109 May 10, 2005 10:09 Type: N Check: 9686 .. 1 cacaaaatat aagaaggaaa gctggatttc ctacctttgt gtttccattg 51 tcgaagcatt ggtcaacgat tacaaaacgg tgcattttct gcatgagcta 101 tcgtttccta acagttagag cattcggctt taccggtttc cattgcgacg 151 ctacgcgctt gctaagtgaa acagaagtca tagacgttcc tacgtccatg 201 actttgttgg cgagaccgaa ctcagacttg aaactgcttg gccccagtgt 251 gaagagaatt gttacacgat tctccctcga ttcaacgttc aagttgactt 301 cgagtatcac cctgtgcgtg tcgagattgt gtgccgagtc tgcgctacat 351 ccctatctgt cattttcagc aagtgggact tctactgtag taggagaggc 401 cattttgttc ctgtagatca gaacggggat ctgtttagga ttggaacgct 451 ccgggagacg ggagagaaat acttctactt ctgtgataaa tctatctgta 501 gacaatgtat catccaggcc gctcaccatc attcctgata acgttggcaa 551 acgttatctg cgcggcgatt ttgttcgaca tccatcgggg ggttaccaac 601 ccggctcact atccaatagt ggcctggata ccccgttcgt tactctgcct 651 ggttgagcgc gtcattcgcg acatacctta taagtatgta agaactcggc 701 tgctccagag gagaaggttg ccaggctata tcgcgcagtc tgccgtattt 751 gtcccgctgg tgtatacaga cttgatcgct cgaatgtcgg agaccgcatg 801 gaccaccggg accgggtatc aactgatgag cactggtatc cgcaacgctg 851 acattgttga tacgagtaca ggcagcttca ccgagtctgc ggacggttac 901 caacagtcac ggtcagtcct gtgcagacat tggcctgaag agcgtcttcg 951 acttgccgtg tattccgata gcgaaccacg aagcattggt cctcctcgga 1001 ctgtcatgat gagattgatg gtgatacttc ttttcactgg tcaccatgtt 1051 tggaataatt ccatggcggc tcctaccgct ctagctaaag ctggcaagca 1101 ggtcgctgac tcgacggatt ggcaaacccc actctcttgc gaccatagat 1151 gcttgatttg tagtggtgcg tgtgccaaaa cagtgtggtc caagctagga 1201 gtgaaagcga ctcaattggt ttgtccatca gataaggatg ccgtaacctg 1251 ttacggtgga tctagttcag acaacttact gtcggggacg ggcgtttgta 1301 gtaaggtcga tttctcatcc aagttaaccc actcatgccc cacggcagct 1351 tggtcggagt ggaacaccga tctactctgc agaggtgtgg taggaatgca 1401 cgttgggttt gaagatatcg gaaaactcaa tcgtggcgtg aacgctttct 1451 atgtgtcaaa ttacttattg aggtctcaag agactcttcc tccagagttg 1501 tccgtgatcg aaattccttt cgaagacgtt gagactcgga gttatgagtt 1551 cattgaggtt gagatcaaag gcagaggtaa ggccaaactt ggtaagcgtg 1601 agttcgcttg gattccagaa tcaggaaaat actgggctga tgatgacgac 1651 gattccttgc ccccaccccc taaggtggta gacggcaaga tggtttggag 1701 ttctgctcag gaaactgttg cggacgcttt aaactaccag cgggcggcag 1751 ggtcaaggcc cttgccgccc ttctcaactt gcaggctacg acttcaaaga 1801 aggagaagca gcctctacaa gaggaatgcc cttagatttg ttgggcagtc 1851 ggcttgcaag tttagagtgt gtagaaagat actccagatg aagtccttag 1901 agctactagg gtcttcccag aattgtcaga cttctcctgg cccgagcgag 1951 gctccaaagc agagcttcac tccctgctac gccaagcagg aaagtttaat 2001 cccactggaa tcccaaggaa tcttgaagga gcttgtcaaa acctccttga 2051 aagcagctac cccacctcca aatcctgtta ctgtctccgt ggagaagctg 2101 gtgcttcgac agcagtctac aagaagtctg caagaagagc gcaatcggcg 2151 gaaatcaacg agaaagtcca gtccaggagt cccgcctctc ccgcctcgcc 2201 tcaaccaaca aagacctcct ttgaggcacc tagagttagt tgctctgtgt 2251 gttaccgaga gattgtttct actcagcgaa gccgaggatt tacttgacga 2301 atctcctgtg gacttggttc gcaggggttt gtgtgacccg gttcggttgt 2351 ttgttaagca ggagccccac gcctcccgaa aggtgagaga gggtcgcttc 2401 cgcttgatat catctgtttc gctggttgat cagcttgtgg agcgtatgct 2451 ctttgggcct caaaaccagc ttgaaatcgc tgagtgggag catattccct 2501 caaaacccgg catgggctta tcgctgcggc aacaggccaa aagcttgttt 2551 gacgacttga gagttaaaca ctctcgttgt cctgcagctg aagctgacat 2601 ttcaggtttt gattggtctg ttcaggactg ggagttgtgg gctgatgtag 2651 agatgataat cgttctgggg ggctttggcc acaaactggc taaagccgcc 2701 aggaataggt tttcgtgttt catgaactca gtcttccagc tctcggatgg 2751 cacactcata gaacagcaat tgcctggtat tatgaagcgg tcattagacc 2801 tcctcaccaa ctccagaatt cgctgcctta tggctgagct cattggctcc 2851 ccgtggtgta tcgccatggg tgatgattct gttgaaggtt gggttgatgg 2901 ggcaaaggac aagtacatga gactagacac acgtgcagat tataaaccct 2951 gtgcaacaac catttccggt cgcttatacg aggtagagtt ctgctctcac 3001 gttataagga agatcgatgt tggttggcgt cgtggcctaa aactctgttt 3051 aaatacttgt ctgagggcaa gtggttcttt gaggacttag agcgagagct 3101 cagttcgtca ccccactggc ccagaatcag acactatgta gtggggaata 3151 ctccatcgcc ccacaaaatt aatttagaaa atcaaagtcc gcgctatggc 3201 tacccgtctg accaaaaaac agctggctca ggctatccag aacaccctgc 3251 cgaacccgcc gcgtcgtaaa cgtcgtgcta aacgtcgtgc tgctcaggtt 3301 ccgaaaccga cccaggctgg ggtatccatg gcccctattg ctcaggggac 3351 tatggttcgc ttacgtgaac catcgcttag aacggctgga ggtgtgacag 3401 tcctaacgca ctctgagctc tcaactgagc tctcagtgac gaatgcgata 3451 gtcatcacct ctgagctcgt tatgccctac acaatgggca cctggcttcg 3501 aggcgttgcg gctaattggt cgaaatatag tttgctgtcg gtcacatata 3551 cgtatctccc ctcttgtcct tcaacgacat ctgggtccat tcacatgggc 3601 ttccaatatg atatggctga cacccttccc gtatccgtta accagttatc 3651 caaccttaga ggttatgtat cagggcaggt ctggtctgga tcctctggct 3701 tgtgctacat aaatggcacg aggtgtcttg acacggccaa tgctatcacg 3751 accacactgg acgttggaca gcttggcaag aagtggtatc ctttcaagac 3801 tagcacagac ttcacaacgg ctgttggcgt aaatgtcaac attgccactc 3851 ccctggtccc ggcgaggcta ataatagcca tgctggatgg gtcgagttct 3901 acggctgtga gtactggacg cctatacgtg tcgtatacta ttcaactgat 3951 agagcccact gctttggcct tgaacaactg aaggagttgt ataataatac 4001 ctgcacccct ctccttggcg ggagggtgtt tcgctttcac atgccacgtg 4051 tttgagggag aatgcacgtt aatcatccct ccgctagtga tggagcgtaa 4101 tccaaaagt