Sequence of DPV Saccharomyces cerevisiae Ty1 virus
Saccharomyces cerevisiae (strain JB84A containing plasmid pNN162) Ty1-H3 gene, complete cds.
ACC No: M18706
Dated: 2000-03-04 | Length: 5918 | CRC: 393032074
!!NA_SEQUENCE 1.0
ID SCTY1H3A standard; genomic DNA; FUN; 5918 BP.
XX
AC M18706;
XX
SV M18706.1
XX
DT 16-JUL-1988 (Rel. 16, Created)
DT 04-MAR-2000 (Rel. 63, Last updated, Version 3)
XX
DE Saccharomyces cerevisiae (strain JB84A containing plasmid pNN162) Ty1-H3
DE gene, complete cds.
XX
KW long terminal repeat; Ty1 transposon B10.
XX
OS Saccharomyces cerevisiae (baker's yeast)
OC Eukaryota; Fungi; Ascomycota; Saccharomycotina; Saccharomycetes;
OC Saccharomycetales; Saccharomycetaceae; Saccharomyces.
XX
RN [1]
RP 1-5918
RX MEDLINE; 88246410.
RX PUBMED; 2837641.
RA Boeke J.D., Eichinger D., Castrillon D., Fink G.R.;
RT "The Saccharomyces cerevisiae genome contains functional and nonfunctional
RT copies of transposon Ty1";
RL Mol. Cell. Biol. 8(4):1432-1442(1988).
XX
DR TRANSFAC; R01476; Y$TY1_01.
DR TRANSFAC; R01477; Y$TY1_02.
XX
CC Submitted in computer readable form by J.D.Boeke 25-MAR-1988.
XX
FH Key Location/Qualifiers
FH
FT source 1. .5918
FT /db_xref="taxon:4932"
FT /mol_type="genomic DNA"
FT /organism="Saccharomyces cerevisiae"
FT /strain="JB84A"
FT LTR 1. .334
FT /note="5' long terminal repeat (delta domain)"
FT mRNA 240. .5880
FT /note="Ty-H3 mRNA (3' end +/- 3 bp)"
FT CDS 294. .1616
FT /codon_start=1
FT /db_xref="InterPro:IPR001042"
FT /db_xref="UniProt/TrEMBL:Q07155"
FT /note="putative"
FT /gene="TyA"
FT /protein_id="AAA66937.1"
FT /translation="MESQQLSQHSPNSHGSACASVTSKEVHTNQDPLDVSASKTEECEK
FT ASTKANSQQTTTPASSAVPENPHHASPQPASVPPPQNGPYPQQCMMTQNQANPSGWSFY
FT GHPSMIPYTPYQMSPMYFPPGPQSQFPQYPSSVGTPLSTPSPESGNTFTDSSSADSDMT
FT STKKYVRPPPMLTSPNDFPNWVKTYIKFLQNSNLGGIIPTVNGKPVRQITDDELTFLYN
FT TFQIFAPSQFLPTWVKDILSVDYTDIMKILSKSIEKMQSDTQEANDIVTLANLQYNGST
FT PADAFETKVTNIIDRLNNNGIHINNKVACQLIMRGLSGEYKFLRYTRHRHLNMTVAELF
FT LDIHAIYEEQQGSRNSKPNYRRNPSDEKNDSRSYTNTTKPKVIARNPQKTNNSKSKTAR
FT AHNVSTSNNSPSTDNDSISKSTTEPIQLNNKHDLHLRPETY"
FT CDS 2095. .5562
FT /codon_start=1
FT /db_xref="GOA:Q07163"
FT /db_xref="InterPro:IPR001584"
FT /db_xref="UniProt/TrEMBL:Q07163"
FT /note="Base 2095 is the position of the first start codon
FT in the ORF; putative"
FT /gene="TyB"
FT /protein_id="AAA66938.1"
FT /translation="MLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQCPDCLIGKS
FT TKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPNSAPSYFISFTDETTKFRWVYPLH
FT DRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTA
FT DSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSKKSARQH
FT AGLAGLDISTLLPFGQPVIVNDHNPNSKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTV
FT DTTNYVILQGKESRLDQFNYDALTFDEDLNRLTASYHSFIASNEIQESNDLNIESDHDF
FT QSDIELHPEQPRNVLSKAVSPTDSTPPSTHTEDSKRVSKTNIRAPREVDPNISESNILP
FT SKKRSSTPQISNIESTGSGGMHKLNVPLLAPMSQSNTHESSHASKSKDFRHSDSYSENE
FT TNHTNVPISSTGGTNNKTVPQISDQETEKRIIHRSPSIDASPPENNSSHNIVPIKTPTT
FT VSEQNTEESIIADLPLPDLPPESPTEFPDPFKELPPINSRQTNSSLGGIGDSNAYTTIN
FT SKKRSLEDNETEIKVSRDTWNTKNMRSLEPPRSKKRIHLIAAVKAVKSIKPIRTTLRYD
FT EAITYNKDIKEKEKYIEAYHKEVNQLLKMKTWDTDEYYDRKEIDPKRVINSMFIFNKKR
FT DGTHKARFVARGDIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLY
FT ADIKEELYIRPPPHLGMNDKLIRLKKSLYGLKQSGANWYETIKSYLIQQCGMEEVRGWS
FT CVFKNSQVTICLFVDDMVLFSKNLNSNKRIIEKLKMQYDTKIINLGESDEEIQYDILGL
FT EIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQDELEIDEDEYK
FT EKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDK
FT QLIWHKNKPTEPDNKLVAISDASYGNQPYYKSQIGNIYLLNGKVIGGKSTKASLTCTST
FT TEAEIHAISESVPLLNNLSYLIQELNKKPIIKGLLTDSRSTISIIKSTNEEKFRNRFFG
FT TKAMRLRDEVSGNNLYVYYIETKKNIADVMTKPLPIKTFKLLTNKWIH"
FT LTR 5585. .5918
FT /note="3' long terminal repeat (delta domain)"
XX
SQ Sequence 5918 BP; 2111 A; 1270 C; 942 G; 1595 T; 0 other;
M18706 Length: 5918 May 9, 2005 17:26 Type: N Check: 396 ..
1 tgttggaata gaaatcaact atcatctact aactagtatt tacattacta
51 gtatattatc atatacggtg ttagaagatg acgcaaatga tgagaaatag
101 tcatctaaat tagtggaagc tgaaacgcaa ggattgataa tgtaatagga
151 tcaatgaata taaacatata aaatgatgat aataatattt atagaattgt
201 gtagaattgc agattccatt ttgaggattc ctatatcctc gaggagaact
251 tctagtatat tctgtatacc taatattata gcctttatca acaatggaat
301 cccaacaatt atctcaacat tcacccaatt ctcatggtag cgcctgtgct
351 tcggttactt ctaaggaagt ccacacaaat caagatccgt tagacgtttc
401 agcttccaaa acagaagaat gtgagaaggc ttccactaag gctaactctc
451 aacagacaac aacacctgct tcatcagctg ttccagagaa cccccatcat
501 gcctctcctc aacctgcttc agtaccacct ccacagaatg ggccgtaccc
551 acagcagtgc atgatgaccc aaaaccaagc caatccatct ggttggtcat
601 tttacggaca cccatctatg attccgtata caccttatca aatgtcgcct
651 atgtactttc cacctgggcc acaatcacag tttccgcagt atccatcatc
701 agttggaacg cctctgagca ctccatcacc tgagtcaggt aatacattta
751 ctgattcatc ctcagcggac tctgatatga catccactaa aaaatatgtc
801 agaccaccac caatgttaac ctcacctaat gactttccaa attgggttaa
851 aacatacatc aaatttttac aaaactcgaa tctcggtggt attattccga
901 cagtaaacgg aaaacccgta cgtcagatca ctgatgatga actcaccttc
951 ttgtataaca cttttcaaat atttgctccc tctcaattcc tacctacctg
1001 ggtcaaagac atcctatccg ttgattatac ggatatcatg aaaattcttt
1051 ccaaaagtat tgaaaaaatg caatctgata cccaagaggc aaacgacatt
1101 gtgaccctgg caaatttgca atataatggc agtacacctg cagatgcatt
1151 tgaaacaaaa gtcacaaaca ttatcgacag actgaacaat aatggcattc
1201 atatcaataa caaggtcgca tgccaattaa ttatgagagg tctatctggc
1251 gaatataaat ttttacgcta cacacgtcat cgacatctaa atatgacagt
1301 cgctgaactg ttcttagata tccatgctat ttatgaagaa caacagggat
1351 cgagaaacag taaacctaat tacaggagaa atccgagtga tgagaagaat
1401 gattctcgca gctatacgaa tacaaccaaa cccaaagtta tagctcggaa
1451 tcctcaaaaa acaaataatt cgaaatcgaa aacagccagg gctcacaatg
1501 tatccacatc taataactct cccagcacgg acaacgattc catcagtaaa
1551 tcaactactg aaccgattca attgaacaat aagcacgacc ttcatcttag
1601 gccagaaact tactgaatct acagtaaatc atactaatca ttctgatgat
1651 gaactccctg gacacctcct tctcgattca ggagcatcac gaacccttat
1701 aagatctgct catcacatac actcagcatc atctaatcct gacataaacg
1751 tagttgatgc tcaaaaaaga aatataccaa ttaacgctat tggtgaccta
1801 caatttcact tccaggacaa caccaaaaca tcaataaagg tattgcacac
1851 tcctaacata gcctatgact tactcagttt gaatgaattg gctgcagtag
1901 atatcacagc atgctttacc aaaaacgtct tagaacggtc tgacggcact
1951 gtacttgcac ctatcgtaaa atatggagac ttttactggg tatctaaaaa
2001 gtacttgctt ccatcaaata tctccgtacc caccatcaat aatgtccata
2051 caagtgaaag tacacgcaaa tatccttatc ctttcattca tcgaatgctt
2101 gcgcatgcca atgcacagac aattcgatac tcacttaaaa ataacaccat
2151 cacgtatttt aacgaatcag atgtcgactg gtctagtgct attgactatc
2201 aatgtcctga ttgtttaatc ggcaaaagca ccaaacacag acatatcaaa
2251 ggttcacgac taaaatacca aaattcatac gaaccctttc aatacctaca
2301 tactgacata tttggtccag ttcacaacct accaaatagt gcaccatcct
2351 atttcatctc atttactgat gagacaacaa aattccgttg ggtttatcca
2401 ttacacgacc gtcgcgagga ctctatcctc gatgttttta ctacgatact
2451 agcttttatt aaaaaccagt ttcaggccag tgtcttggtt atacaaatgg
2501 accgtggttc tgagtatact aacagaactc tccataaatt ccttgaaaaa
2551 aatggtataa ctccatgcta tacaaccaca gcggattccc gagcacatgg
2601 agtcgctgaa cggctaaacc gtaccttatt agatgactgc cgtactcaac
2651 tgcaatgtag tggtttaccg aaccatttat ggttctctgc aatcgaattt
2701 tctactattg tgagaaattc actagcttca cctaaaagca aaaaatctgc
2751 aagacaacat gctggcttgg caggacttga tatcagtact ttgttacctt
2801 tcggtcaacc tgttatcgtc aatgatcaca accctaactc caaaatacat
2851 cctcgtggca tcccaggcta cgctctacat ccgtctcgaa actcttatgg
2901 atatatcatc tatcttccat ccttaaagaa gacagtagat acaactaact
2951 atgttattct tcagggcaag gaatccagat tagatcaatt caattacgac
3001 gcactcactt tcgatgaaga cttaaaccgt ttaactgctt catatcattc
3051 gttcattgcg tcaaatgaga tccaagaatc caatgatctt aacatagaat
3101 ctgaccatga cttccaatcc gacattgaac tacatcctga gcaaccgaga
3151 aatgtccttt caaaagctgt gagtccaacc gattccacac ctccgtcaac
3201 tcatactgaa gattcgaaac gtgtttctaa aaccaatatt cgcgcaccca
3251 gagaagttga ccccaacata tctgaatcta atattcttcc atcaaagaag
3301 agatctagca ccccccaaat ttccaatatc gagagtaccg gttcgggtgg
3351 tatgcataaa ttaaatgttc ctttacttgc tcccatgtcc caatctaaca
3401 cacatgagtc gtcgcacgcc agtaaatcta aagatttcag acactcagac
3451 tcgtacagtg aaaatgagac taatcataca aacgtaccaa tatccagtac
3501 gggtggtacc aacaacaaaa ctgttccgca gataagtgac caagagactg
3551 agaaaaggat tatacaccgt tcaccttcaa tcgatgcttc tccaccggaa
3601 aataattcat cgcacaatat tgttcctatc aaaacgccaa ctactgtttc
3651 tgaacagaat accgaggaat ctatcatcgc tgatctccca ctccctgatc
3701 tacctccaga atctcctacc gaattccctg acccatttaa agaactccca
3751 ccgataaatt ctcgtcaaac taattccagt ttgggtggta ttggtgactc
3801 taatgcctat actactatca acagtaagaa aagatcatta gaagataatg
3851 aaactgaaat taaggtatca cgagacacat ggaatactaa gaatatgcgt
3901 agtttagaac ctccgagatc gaagaaacga attcacctga ttgcagctgt
3951 aaaagcagta aaatcaatca aaccaatacg gacaacctta cgatacgatg
4001 aggcaatcac ctataataaa gatattaaag aaaaagaaaa atatatcgag
4051 gcataccaca aagaagtcaa tcaactgttg aagatgaaaa cttgggacac
4101 tgacgaatat tatgacagaa aagaaataga ccctaaaaga gtaataaact
4151 caatgtttat cttcaacaag aaacgtgacg gtactcataa agctagattt
4201 gttgcaagag gtgatattca gcatcctgac acttacgact caggcatgca
4251 atccaatacc gtacatcact atgcattaat gacatccctg tcacttgcat
4301 tagacaataa ctactatatt acacaattag acatatcttc ggcatatttg
4351 tatgcagaca tcaaagaaga attatacata agacctccac cacatttagg
4401 aatgaatgat aagttgatac gtttgaagaa atcactttat ggattgaaac
4451 aaagtggagc gaactggtac gaaactatca aatcatacct gatacaacaa
4501 tgtggtatgg aagaagttcg tggatggtca tgcgtattta aaaacagtca
4551 agtgacaatt tgtttattcg tagatgatat ggtattgttt agcaaaaatc
4601 taaattcaaa caaaagaatt atagagaagc ttaagatgca atacgacacc
4651 aagattataa atctaggcga aagtgatgag gaaattcaat atgacatact
4701 tggcttagaa atcaaatatc aaagaggtaa atacatgaaa ttaggtatgg
4751 aaaactcatt aactgagaaa atacccaaat taaacgtacc tttgaatcca
4801 aaaggaagaa aacttagcgc tccaggtcaa ccaggtcttt atatagacca
4851 ggatgaacta gaaatagatg aagatgaata caaagagaag gtacatgaaa
4901 tgcaaaagtt gattggtcta gcttcatatg ttggatataa atttagattt
4951 gacttactat actacatcaa cacacttgct caacatatac tattcccctc
5001 taggcaagtt ttagacatga catatgagtt gatacaattc atgtgggaca
5051 ctagagataa acaactgata tggcacaaaa acaaacctac cgagccagat
5101 aataaactag tcgcaataag tgatgcttcg tatggcaacc aaccgtatta
5151 taaatcacaa attggcaaca tatatttact taatggaaag gtaattggag
5201 gaaagtccac caaggcttca ttaacatgta cttcaactac ggaagcagaa
5251 atacacgcga taagtgaatc tgtcccatta ttaaataatc taagttacct
5301 gatacaagaa cttaacaaga aaccaattat taaaggctta cttactgata
5351 gtagatcaac gatcagtata attaagtcta caaatgaaga gaaatttaga
5401 aacagatttt ttggcacaaa ggcaatgaga cttagagatg aagtatcagg
5451 taataattta tacgtatact acatcgagac caagaagaac attgctgatg
5501 tgatgacaaa acctcttccg ataaaaacat ttaaactatt aactaacaaa
5551 tggattcatt agatctatta cattatgggt ggtatgttgg aatagaaatc
5601 aactatcatc tactaactag tatttacatt actagtatat tatcatatac
5651 ggtgttagaa gatgacgcaa atgatgagaa atagtcatct aaattagtgg
5701 aagctgaaac gcaaggattg ataatgtaat aggatcaatg aatataaaca
5751 tataaaatga tgataataat atttatagaa ttgtgtagaa ttgcagattc
5801 ccttttatgg attcctaaat ccttgaggag aacttctagt atattctgta
5851 tacctaatat tatagccttt atcaacaatg gaatcccaac aattatctca
5901 acattcaccc atttctca