Sequence of DPV Gibbon ape leukemia virus
Gibbon ape leukemia virus gag, pol, and env genes, complete cds.
ACC No: M26927
Dated: 2000-03-04 | Length: 8088 | CRC: -1404907696
!!NA_SEQUENCE 1.0
ID PCGGPE standard; genomic RNA; VRL; 8088 BP.
XX
AC M26927;
XX
SV M26927.1
XX
DT 25-APR-1990 (Rel. 23, Created)
DT 04-MAR-2000 (Rel. 63, Last updated, Version 3)
XX
DE Gibbon ape leukemia virus gag, pol, and env genes, complete cds.
XX
KW env protein; envelope-associated protein; gag protein; integrase;
KW nucleocapsid protein; pol protein; protease; reverse transcriptase.
XX
OS Gibbon ape leukemia virus (GALV)
OC Viruses; Retroid viruses; Retroviridae; Gammaretrovirus.
XX
RN [1]
RP 1-8088
RX MEDLINE; 90051069.
RX PUBMED; 2683360.
RA Delassus S., Sonigo P., Wain-Hobson S.;
RT "Genetic organization of gibbon ape leukemia virus";
RL Virology 173(1):205-213(1989).
XX
CC Draft entry and computer-readable copy of sequence [1] kindly
CC submitted by S.Wain-Hobson, 08-AUG-1989.
CC Bases 4518 to 4926 in [1] are from the SF strain of GaLV.
XX
FH Key Location/Qualifiers
FH
FT source 1. .8088
FT /db_xref="taxon:11840"
FT /mol_type="genomic RNA"
FT /organism="Gibbon ape leukemia virus"
FT LTR <1. .125
FT /note="5' long terminal repeat"
FT repeat_region <1. .69
FT /note="LTR R region"
FT primer_bind 126. .142
FT /note="primer (Pro-tRNA) binding site"
FT CDS 631. .2193
FT /codon_start=1
FT /db_xref="GOA:P21416"
FT /db_xref="HSSP:Q9WJP4"
FT /db_xref="UniProt/Swiss-Prot:P21416"
FT /note="gag polyprotein"
FT /protein_id="AAA46809.1"
FT /translation="MGQDNSTPISLTLNHWRDVRTRAHNLSVEIKKGKWQTFCSSEWPT
FT FGVGWPPEGTFNLSVIFAVKKIVFQENGGHPDQVPYIVVWQDLAQNPPPWVPASAKVAV
FT VSDTRRPVAGRPSAPPRPPIYPATDDLLLLSEPTPPPYPAALPPPLAPQAIGPPSGQMP
FT DSSDPEGPAAGTRSRRARSPADNSGPDSTVILPLRAIGPPAEPNGLVPLQYWPFSSADL
FT YNWKSNHPSFSENPAGLTGLLESLMFSHQPTWDDCQQLLQILFTTEERERILLEARKNV
FT LGDNGAPTQLENLINEAFPLNRPHWDYNTAAGRERLLVYRRTLVAGLKGAARRPTNLAK
FT VREVLQGPAEPPSVFLERLMEAYRRYTPFDPSSEGQQAAVAMAFIGQSAPDIKKKLQRL
FT EGLQDYSLQDLVKEAEKVYHKRETEEERQEREKKEAEEKERRRDRPKKKNLTKILAAVV
FT SREGSTGRQTGNLSNQAKKTPRDGRPPLDKDQCAYCKEKGHWARECPRKKHVREAKVLA
FT LDN"
FT CDS 2194. .5691
FT /codon_start=1
FT /db_xref="GOA:P21414"
FT /db_xref="HSSP:P03355"
FT /db_xref="UniProt/Swiss-Prot:P21414"
FT /note="NH2 terminal uncertain"
FT /partial
FT /product="pol polyprotein"
FT /protein_id="AAA46810.1"
FT /translation="GSQGSDPLPEPRVTLTVEGTPIEFLVDTGAEHSVLTQPMGKVGSR
FT RTVVEGATGSKVYPWTTKRLLKIGHKQVTHSFLVIPECPAPLLGRDLLTKLKAQIQFSA
FT EGPQVTWGERPTMCLVLNLEEEYRLHEKPVPSSIDPSWLQLFPTVWAERAGMGLANQVP
FT PVVVELRSGASPVAVRQYPMSKEAREGIRPHIQKFLDLGVLVPCRSPWNTPLLPVKKPG
FT TNDYRPVQDLREINKRVQDIHPTVPNPYNLLSSLPPSYTWYSVLDLKDAFFCLRLHPNS
FT QPLFAFEWKDPEKGNTGQLTWTRLPQGFKNSPTLFDEALHRDLAPFRALNPQVVLLQYV
FT DDLLVAAPTYEDCKKGTQKLLQELSKLGYRVSAKKAQLCQREVTYLGYLLKEGKRWLTP
FT ARKATVMKIPVPTTPRQVREFLGTAGFCRLWIPGFASLAAPLYPLTKESIPFIWTEEHQ
FT QAFDHIKKALLSAPALALPDLTKPFTLYIDERAGVARGVLTQTLGPWRRPVAYLSKKLD
FT PVASGWPTCLKAVAAVALLLKDADKLTLGQNVTVIASHSLESIVRQPPDRWMTNARMTH
FT YQSLLLNERVSFAPPAVLNPATLLPVESEATPVHRCSEILAEETGTRRDLEDQPLPGVP
FT TWYTDGSSFITEGKRRAGAPIVDGKRTVWASSLPEGTSAQKAELVALTQALRLAEGKNI
FT NIYTDSRYAFATAHIHGAIYKQRGLLTSAGKDIKNKEEILALLEAIHLPRRVAIIHCPG
FT HQRGSNPVATGNRRADEAAKQAALSTRVLAGTTKPQEPIEPAQEKTRPRELTPDRGKEF
FT IKRLHQLTHLGPEKLLQLVNRTSLLIPNLQSAVREVTSQCQACAMTNAVTTYRETGKRQ
FT RGDRPGVYWEVDFTEIKPGRYGNKYLLVFIDTFSGWVEAFPTKTETALIVCKKILEEIL
FT PRFGIPKVLGSDNGPAFVAQVSQGLATQLGINWKLHCAYRPQSSGQVERMNRTIKETLT
FT KLALETGGKDWVTLLPLALLRARNTPGRFGLTPYEILYGGPPPILESGETLGPDDRFLP
FT VLFTHLKALEIVRTQIWDQIKEVYKPGTVTIPHPFQVGDQVLVRRHRPSSLEPRWKGPY
FT LVLLTTPTAVKVDGIAAWVHASHLKPAPPSAPDESWELEKTDHPLKLRIRRRRDESAK"
FT CDS 5552. .7555
FT /codon_start=1
FT /db_xref="GOA:P21415"
FT /db_xref="HSSP:P03385"
FT /db_xref="UniProt/Swiss-Prot:P21415"
FT /note="env protein"
FT /protein_id="AAA46811.1"
FT /translation="MVLLPGSMLLTSNLHHLRHQMSPGSWKRLIILLSCVFGGGGTSLQ
FT NKNPHQPMTLTWQVLSQTGDVVWDTKAVQPPWTWWPTLKPDVCALAASLESWDIPGTDV
FT SSSKRVRPPDSDYTAAYKQITWGAIGCSYPRARTRMASSTFYVCPRDGRTLSEARRCGG
FT LESLYCKEWDCETTGTGYWLSKSSKDLITVKWDQNSEWTQKFQQCHQTGWCNPLKIDFT
FT DKGKLSKDWITGKTWGLRFYVSGHPGVQFTIRLKITNMPAVAVGPDLVLVEQGPPRTSL
FT ALPPPLPPREAPPPSLPDSNSTALATSAQTPTVRKTIVTLNTPPPTTGDRLFDLVQGAF
FT LTLNATNPGATESCWLCLAMGPPYYEAIASSGEVAYSTDLDRCRWGTQGKLTLTEVSGH
FT GLCIGKVPFTHQHLCNQTLSINSSGDHQYLLPSNHSWWACSTGLTPCLSTSVFNQTRDF
FT CIQVQLIPRIYYYPEEVLLQAYDNSHPRTKREAVSLTLAVLLGLGITAGIGTGSTALIK
FT GPIDLQQGLTSLQIAIDADLRALQDSVSKLEDSLTSLSEVVLQNRRGLDLLFLKEGGLC
FT AALKEECCFYIDHSGAVRDSMKKLKEKLDKRQLERQKSQNWYEGWFNNSPWFTTLLSTI
FT AGPLLLLLLLLILGPCIINKLVQFINDRISAC"
FT LTR 7651. .>8088
FT /note="3' long terminal repeat"
FT repeat_region 8020. .>8088
FT /note="LTR R region"
XX
SQ Sequence 8088 BP; 2103 A; 2251 C; 1982 G; 1752 T; 0 other;
M26927 Length: 8088 January 7, 2005 14:55 Type: N Check: 5631 ..
1 gcgccagtcc ttagagagac tgagccgccc gggtacccgt gtgtccaata
51 aaacctcttg ctgattgcat ccggagccgt ggtctcgttg ttccttggga
101 gggtttctcc taactattga ccgcccactt cgggggtctc acatttgggg
151 gctcgtccgg gatcggaaac cccacccagg gaccaccgac ccaccaacgg
201 gaggtaagct ggccagcgac cgttgtgtgt ctcgcttctg tgtctaagtc
251 cgtaattctg actgtccttg tgtgtctcgc ttctgtgtct gagaccgtaa
301 ctctgactgc ccttgtaagt gcgcgcattt ttttggtttc agtctgttcc
351 gggtgaatca ctctgcgagt gacgtgtgag tagcgaacag acgtgttcgg
401 ggctcaccgc ctggtaatcc agggagacgt cccaggatca ggggaggacc
451 agggacgcct ggtggacccc tcggtaacgg gtcgttgtga cccgatttca
501 tcgcccgtct ggtaagacgc gctctgaatc tgattctctc tctcggtcgc
551 ctcgccgccg tctctggttt ctttttgttt cgtttctgga aagcctctgt
601 gtcacagtct ttctctccca aatcatcaat atgggacaag ataattctac
651 ccctatctcc ctcactctaa atcactggag agatgtgaga acaagggctc
701 acaatctatc cgtggaaatc aaaaagggaa aatggcagac tttctgttcc
751 tccgagtggc ccacattcgg cgtggggtgg ccaccggagg gaacttttaa
801 tctctctgtc atttttgcag ttaaaaagat tgtctttcag gagaacgggg
851 gacatccgga ccaagttcca tatatcgtgg tatggcagga cctcgcccag
901 aatcccccac catgggtgcc agcctccgcc aaggtcgctg ttgtctctga
951 tacccgaaga ccagttgcgg ggaggccatc agctcctccc cgacccccca
1001 tctacccggc aacagacgac ttactcctcc tctctgaacc cacgcccccg
1051 ccctatccgg cggcactgcc accccctctg gcccctcagg cgatcggacc
1101 gccgtcaggc cagatgcccg atagtagcga tcctgagggg ccagccgctg
1151 ggaccaggag tcgccgtgcc cgcagtccag cagacaactc gggtcctgac
1201 tccactgtga ttttgcccct ccgagccata ggacccccgg ccgagcccaa
1251 tggcctggtc cctctacaat attggccttt ttcctcagca gatctttata
1301 attggaaatc taatcatccc tctttttctg aaaacccagc aggtctcacg
1351 gggctccttg agtctcttat gttctcccat cagcccactt gggacgattg
1401 ccaacagctc ctacagattc ttttcaccac tgaggaacgg gaaagaattc
1451 tcctggaggc ccgcaaaaat gtccttgggg acaatggggc ccctacacag
1501 ctcgagaacc tcattaatga ggccttcccc ctcaatcgac ctcactggga
1551 ttacaacaca gccgcaggta gggagcgtct tctggtctac cgccggactc
1601 tagtggcagg tctcaaaggg gcagctcggc gtcctaccaa tttggctaag
1651 gtaagagagg tcttgcaggg accggcagaa cccccttcgg ttttcttaga
1701 acgcctgatg gaggcctata ggagatacac tccgtttgat ccctcttctg
1751 agggacaaca ggctgcggtc gccatggcct ttatcggaca gtcagcccca
1801 gatatcaaga aaaagttaca gaggctagag gggctccagg actattcctt
1851 acaagattta gtaaaagagg cagaaaaggt gtaccataag agagagacag
1901 aagaagaaag acaagaaaga gaaaaaaagg aggcagaaga aaaggagagg
1951 cggcgcgata ggccgaagaa aaaaaacttg actaaaattc tggccgcagt
2001 agtaagtaga gaagggtcca caggtaggca gacagggaac ctgagcaacc
2051 aggcaaagaa gacacctagg gatggaagac ctccactaga caaagaccag
2101 tgcgcatact gtaaagagaa gggccattgg gcaagagaat gtccccgaaa
2151 aaaacacgtc agagaagcca aggttctagc cctagataac taggggagtc
2201 agggttcgga ccccctcccc gaacctaggg taacactgac tgtggagggg
2251 acccccattg agttcctggt cgacaccgga gctgaacatt cagtattgac
2301 ccaacccatg ggaaaagtag ggtccagacg gacggtcgtg gaaggagcga
2351 caggcagcaa ggtctacccc tggaccacaa aaagactttt aaaaattgga
2401 cataaacaag tgacccactc cttcctggtc atacccgagt gccctgctcc
2451 tctgttgggc agggacctcc taaccaaact aaaggcccag atccagtttt
2501 ccgctgaggg cccacaggta acatggggag aacgccctac tatgtgcctg
2551 gtcctaaacc tggaagaaga ataccgacta catgaaaagc cagtaccctc
2601 ctctatcgac ccatcctggc tccagctttt ccccactgta tgggcagaaa
2651 gagccggcat gggactagcc aatcaagtcc caccagtggt agtagagcta
2701 agatcaggtg cctcaccagt ggctgttcga caatatccaa tgagcaaaga
2751 agctcgggaa ggtatcagac cccacatcca gaagttccta gacctagggg
2801 tcttggtgcc ctgtcggtcg ccctggaata cccctctgct acctgtaaaa
2851 aagccaggga ccaatgacta tcggccagtt caagacctga gagaaattaa
2901 taaaagggta caggatattc atcccacagt cccaaaccct tacaatcttc
2951 tgagttccct tccgcctagc tatacttggt actcagtctt agatctcaag
3001 gatgcctttt tctgcctcag gctacatccc aacagccagc cgctgttcgc
3051 gttcgagtgg aaagacccag aaaaaggtaa cacaggtcag ctgacctgga
3101 cgcggctacc acaagggttc aagaactctc ccactctctt cgacgaggcc
3151 ctccaccgag atttggctcc ctttagggcc ctcaaccccc aggtggtgtt
3201 actccaatat gtggacgacc tcttggtggc cgcccccaca tatgaagact
3251 gcaaaaaagg aacacagaag ctcttacagg agttaagtaa gttggggtac
3301 cgggtatcgg ctaagaaggc ccagctctgc cagagagaag tcacctatct
3351 ggggtaccta ctcaaggaag gaaaaagatg gctaacccca gcccgaaagg
3401 ctactgttat gaaaatccct gttcctacga cccccagaca ggtccgtgaa
3451 tttctaggca ctgccggatt ctgcaggctc tggatccctg ggtttgcttc
3501 cctggctgca cccttgtacc ccctaacaaa agagagcatc ccttttattt
3551 ggactgagga acatcagcag gcttttgacc acataaaaaa agccttgctg
3601 tcagcccctg cattggccct cccagacctc accaagccat tcactctata
3651 tatagatgag agagccggcg tggcccgggg agtgctcact cagactttag
3701 gaccctggcg gcggccagta gcatatctat caaaaaaact ggatccggtg
3751 gccagcgggt ggccaacctg cctgaaagcg gttgcagcag tagcactcct
3801 tctcaaagac gctgataagt taaccttggg acaaaatgtg actgtgattg
3851 cttcccatag cctcgaaagc atcgtgcggc aaccccccga ccggtggatg
3901 accaatgcca gaatgactca ttaccagagc ctgctgttaa atgaaagggt
3951 atcgtttgcg ccccctgctg tcctaaaccc agctacccta cttccagtcg
4001 agtcggaagc caccccagtg cacaggtgct cagaaatcct cgccgaagaa
4051 actggaactc gacgagacct agaagaccaa ccattgcccg gggtgccaac
4101 ctggtataca gacggtagca gtttcatcac ggaaggtaaa cggagagcag
4151 gggccccgat cgtagatggc aagcggacgg tatgggctag cagcctgcca
4201 gaaggtacgt cagcccagaa ggctgaacta gtagccttga cgcaggcatt
4251 acgcctggcc gaaggaaaaa acatcaacat ctacacggac agcaggtatg
4301 cttttgccac tgctcatatt catggggcaa tatataagca gagggggctg
4351 ctcacttctg ctggaaaaga tatcaaaaac aaagaggaaa ttttggccct
4401 gctagaggcc atccatctcc ctaggcgggt cgccattatc cactgtcctg
4451 gccaccagag gggaagtaac cctgtggcca ctgggaaccg gagggccgac
4501 gaggctgcaa agcaagccgc cctgtcgacc agagtgctgg caggaactac
4551 aaaacctcaa gagccaatcg agcccgctca agaaaagacc aggccgaggg
4601 agctcacccc tgaccgggga aaagaattca ttaagcggtt acatcagtta
4651 actcacttag gaccagaaaa gcttctccaa ctagtgaacc gtaccagcct
4701 cctcatcccg aacctccaat ctgcagttcg cgaagtcacc agtcagtgtc
4751 aggcttgtgc catgactaat gcggtcacca cctacagaga gaccggaaaa
4801 aggcaacgag gagatcgacc cggcgtgtac tgggaggtag acttcacaga
4851 aataaagcct ggtcggtatg gaaacaagta tctgttagta ttcatagata
4901 ctttctccgg atgggtagaa gcttttccta ccaaaactga aacggcccta
4951 atcgtctgta aaaaaatatt agaagaaatt ctaccccgct tcgggatccc
5001 taaggtactc gggtcagaca atggcccggc ctttgttgct caggtaagtc
5051 agggactggc cactcaactg gggataaatt ggaagttaca ttgtgcgtat
5101 agaccccaga gctcaggtca ggtagaaaga atgaacagaa caattaaaga
5151 gaccttgacc aaattagcct tagagaccgg tggaaaagac tgggtgaccc
5201 tccttccctt agcgctgctt agggccagga atacccctgg ccggtttggt
5251 ttaactcctt atgaaattct ctatggagga ccacccccca tacttgagtc
5301 tggagaaact ttgggtcccg atgatagatt tctccctgtc ttatttactc
5351 acttaaaggc tttagaaatt gtaaggaccc aaatctggga ccagatcaaa
5401 gaggtgtata agcctggtac cgtaacaatc cctcacccgt tccaggtcgg
5451 ggatcaagtg cttgtcagac gccatcgacc cagcagcctt gagcctcggt
5501 ggaaaggccc atacctggtg ttgctgacta ccccgaccgc ggtaaaagtc
5551 gatggtattg ctgcctgggt ccatgcttct cacctcaaac ctgcaccacc
5601 ttcggcacca gatgagtcct gggagctgga aaagactgat catcctctta
5651 agctgcgtat tcggcggcgg cgggacgagt ctgcaaaata agaaccccca
5701 ccagcccatg accctcactt ggcaggtact gtcccaaact ggagacgttg
5751 tctgggatac aaaggcagtc cagccccctt ggacttggtg gcccacactt
5801 aaacctgatg tatgtgcctt ggcggctagt cttgagtcct gggatatccc
5851 gggaaccgat gtctcgtcct ctaaacgagt cagacctccg gactcagact
5901 atactgccgc ttataagcaa atcacctggg gagccatagg gtgcagctac
5951 cctcgggcta ggactagaat ggcaagctct accttctacg tatgtccccg
6001 ggatggccgg accctttcag aagctagaag gtgcgggggg ctagaatccc
6051 tatactgtaa agaatgggat tgtgagacca cggggaccgg ttattggcta
6101 tctaaatcct caaaagacct cataactgta aaatgggacc aaaatagcga
6151 atggactcaa aaatttcaac agtgtcacca gaccggctgg tgtaaccccc
6201 ttaaaataga tttcacagac aaaggaaaat tatccaagga ctggataacg
6251 ggaaaaacct ggggattaag attctatgtg tctggacatc caggcgtaca
6301 gttcaccatt cgcttaaaaa tcaccaacat gccagctgtg gcagtaggtc
6351 ctgacctcgt ccttgtggaa caaggacctc ctagaacgtc cctcgctctc
6401 ccacctcctc ttcccccaag ggaagcgcca ccgccatctc tccccgactc
6451 taactccaca gccctggcga ctagtgcaca aactcccacg gtgagaaaaa
6501 caattgttac cctaaacact ccgcctccca ccacaggcga cagacttttt
6551 gatcttgtgc agggggcctt cctaacctta aatgctacca acccaggggc
6601 cactgagtct tgctggcttt gtttggccat gggcccccct tattatgaag
6651 caatagcctc atcaggagag gtcgcctact ccaccgacct tgaccggtgc
6701 cgctggggga cccaaggaaa gctcaccctc actgaggtct caggacacgg
6751 gttgtgcata ggaaaggtgc cctttaccca tcagcatctc tgcaatcaga
6801 ccctatccat caattcctcc ggagaccatc agtatctgct cccctccaac
6851 catagctggt gggcttgcag cactggcctc accccttgcc tctccacctc
6901 agtttttaat cagactagag atttctgtat ccaggtccag ctgattcctc
6951 gcatctatta ctatcctgaa gaagttttgt tacaggccta tgacaattct
7001 caccccagga ctaaaagaga ggctgtctca cttaccctag ctgttttact
7051 ggggttggga atcacggcgg gaataggtac tggttcaact gccttaatta
7101 aaggacctat agacctccag caaggcctga caagcctcca gatcgccata
7151 gatgctgacc tccgggccct ccaagactca gtcagcaagt tagaggactc
7201 actgacttcc ctgtccgagg tagtgctcca aaataggaga ggccttgact
7251 tgctgtttct aaaagaaggt ggcctctgtg cggccctaaa ggaagagtgc
7301 tgtttttaca tagaccactc aggtgcagta cgggactcca tgaaaaaact
7351 caaagaaaaa ctggataaaa gacagttaga gcgccagaaa agccaaaact
7401 ggtatgaagg atggttcaat aactcccctt ggttcactac cctgctatca
7451 accatcgctg ggcccctatt actcctcctt ctgttgctca tcctcgggcc
7501 atgcatcatc aataagttag ttcaattcat caatgatagg ataagtgcat
7551 gttaaaattc tggtccttag acaaaatatc aggccctaga gaacgaaggt
7601 aacctttaat tttgctctaa gattagagct attcacaaga gaaatggggg
7651 aatgaaagaa gtgttttttt ttagccaact gcagtaacgc cattttgcta
7701 ggcacaccta aaggatagga aaaatacagc taagaacagg gccaaacagg
7751 atatctgtgg tcatgcacct gggccccggc ccaggccaag gacagagggt
7801 tcccagaaat agatgagtca acagcagttt ccagcaagga cagagggttc
7851 ccagaaatag atgagtcaac agcagtttcc agggtgcccc tcaaccgttt
7901 caaggactcc catgaccggg aattcacccc tggccttatt tgaactaacc
7951 aattaccttg cctctcgctt ctgtacccgc gctttttgct ataaaataag
8001 ctcagaaact ccacccggag cgccagtcct tagagagact gagccgcccg
8051 ggtacccgtg tgtccaataa aacctcttgc tgattgca