Sequence of DPV Chicken anemia virus
Chicken anemia virus ORF1 (Cux-1), ORF2 (Cux-1), and ORF3 (Cux-1) genes, complete cds.
ACC No: M55918
Dated: 2005-10-08 | Length: 2319 | CRC: 1258056704
ID M55918 standard; genomic DNA; VRL; 2319 BP. XX AC M55918; XX SV M55918.1 XX DT 07-JUN-1991 (Rel. 28, Created) DT 08-OCT-2005 (Rel. 85, Last updated, Version 7) XX DE Chicken anemia virus ORF1 (Cux-1), ORF2 (Cux-1), and ORF3 (Cux-1) genes, DE complete cds. XX KW . XX OS Chicken anemia virus OC Viruses; ssDNA viruses; Circoviridae; Gyrovirus. XX RN [1] RP 1-2319 RX PUBMED; 1851873. RA Noteborn M.H.M., de Boer G.F., Roozelaar D.J., Karreman C., Kranenburg O., RA Vos J.G., Jeurissen S.H.M., Hoeben R.C., Zantema A., Koch G., RA van Ormondt H., van der Eb A.J.; RT "Characterization of cloned chicken anemia virus DNA that contains all RT elements for the infectious replication cycle"; RL J. Virol. 65(6):3131-3139(1991). XX CC Original source text: Chicken anemia virus (individual_isolate CC Cuxhaven-1) DNA. XX FH Key Location/Qualifiers FH FT source 1. .2319 FT /db_xref="taxon:12618" FT /mol_type="genomic DNA" FT /organism="Chicken anemia virus" FT /isolate="Cuxhaven-1" FT gene 144. .2292 FT /gene="Cux-1" FT repeat_region 144. .260 FT /note="21-bp repeats with ATF sites" FT /rpt_unit=219. .239 FT /rpt_unit=240. .260 FT /rpt_unit=165. .185 FT /rpt_unit=186. .206 FT /rpt_unit=144. .164 FT repeat_unit 144. .164 FT /gene="Cux-1" FT repeat_unit 165. .185 FT /gene="Cux-1" FT repeat_unit 186. .206 FT /gene="Cux-1" FT repeat_unit 219. .239 FT /gene="Cux-1" FT repeat_unit 240. .260 FT /gene="Cux-1" FT CAAT_signal 261. .266 FT /gene="Cux-1" FT promoter 305. .310 FT /note="SP1 box" FT /gene="Cux-1" FT TATA_signal 323. .328 FT /gene="Cux-1" FT CDS 380. .1030 FT /codon_start=1 FT /db_xref="InterPro:IPR006945" FT /db_xref="UniProtKB/Swiss-Prot:P69484" FT /note="ORF1" FT /gene="Cux-1" FT /protein_id="AAA91822.1" FT /translation="MHGNGGQPAAGGSESALSREGQPGPSGAAQGQVISNERSPRRYST FT RTINGVQATNKFTAVGNPSLQRDPDWYRWNYNHSIAVWLRECSRSHAKICNCGQFRKHW FT FQECAGLEDRSTQASLEEAILRPLRVQGKRAKRKLDYHYSQPTPNRKKAYKTVRWQDEL FT ADREADFTPSEEDGGTTSSDFDEDINFDIGGDSGIVDELLGRPFTTPAPVRIV" FT CDS 486. .851 FT /codon_start=1 FT /db_xref="GOA:Q99152" FT /db_xref="InterPro:IPR006858" FT /db_xref="UniProtKB/Swiss-Prot:Q99152" FT /note="ORF2" FT /gene="Cux-1" FT /protein_id="AAA91823.1" FT /translation="MNALQEDTPPGPSTVFRPPTSSRPLETPHCREIRIGIAGITITLS FT LCGCANARAPTLRSATADNSESTGFKNVPDLRTDQPKPPSKKRSCDPSEYRVSELKESL FT ITTTPSRPRTAKRRIRL" FT CDS 853. .2202 FT /codon_start=1 FT /db_xref="GOA:Q99153" FT /db_xref="InterPro:IPR007291" FT /db_xref="UniProtKB/Swiss-Prot:Q99153" FT /note="ORF3" FT /gene="Cux-1" FT /protein_id="AAA91824.1" FT /translation="MARRARRPRGRFYSFRRGRWHHLKRLRRRYKFRHRRRQRYRRRAF FT RKAFHNPRPGTYSVRLPNPQSTMTIRFQGVIFLTEGLILPKNSTAGGYADHMYGARVAK FT ISVNLKEFLLASMNLTYVSKIGGPIAGELIADGSKSQAADNWPNCWLPLDNNVPSATPS FT AWWRWALMMMQPTDSCRFFNHPKQMTLQDMGRMFGGWHLFRHIETRFQLLATKNEGSFS FT PVASLLSQGEYLTRRDDVKYSSDHQNRWQKGGQPMTGGIAYATGKMRPDEQQYPAMPPD FT PPIITATTAQGTQVRCMNSTQAWWSWDTYMSFATLTALGAQWSFPPGQRSVSRRSFNHH FT KARGAGDPKGQRWHTLVPLGTETITDSYMSAPASELDTNFFTLYVAQGTNKSQQYKFGT FT ATYALKEPVMKSDAWAVVRVQSVWQLGNRQRPYPWDVNWANSTMYWGTQP" FT polyA_signal 2287. .2292 FT /gene="Cux-1" XX SQ Sequence 2319 BP; 591 A; 666 C; 643 G; 419 T; 0 other; M55918 Length: 2319 08-OCT-2005 Type: N Check: 3701 .. 1 gaattccgag tggttactat tccatcacca ttctagcctg tacacagaaa 51 gtcaagatgg acgaatcgct cgacttcgct cgcgattcgt cgaaggcggg 101 gggccggagg ccccccggtg gcccccctcc aacgagtgga gcacgtacag 151 gggggtacgt catccgtaca ggggggtacg tcatccgtac aggggggtac 201 gtcacaaaga ggcgttcccg tacagggggg tacgtcacgc gtacaggggg 251 gtacgtcaca gccaatcaaa agctgccacg ttgcgaaagt gacgtttcga 301 aaatgggcgg cgcaagcctc tctatatatt gagcgcacat accggtcggc 351 agtaggtata cgcaaggcgg tccgggtgga tgcacgggaa cggcggacaa 401 ccggccgctg ggggcagtga atcggcgctt agccgagagg ggcaacctgg 451 gcccagcgga gccgcgcagg ggcaagtaat ttcaaatgaa cgctctccaa 501 gaagatactc cacccggacc atcaacggtg ttcaggccac caacaagttc 551 acggccgttg gaaacccctc actgcagaga gatccggatt ggtatcgctg 601 gaattacaat cactctatcg ctgtgtggct gcgcgaatgc tcgcgctccc 651 acgctaagat ctgcaactgc ggacaattca gaaagcactg gtttcaagaa 701 tgtgccggac ttgaggaccg atcaacccaa gcctccctcg aagaagcgat 751 cctgcgaccc ctccgagtac agggtaagcg agctaaaaga aagcttgatt 801 accactactc ccagccgacc ccgaaccgca aaaaggcgta taagactgta 851 agatggcaag acgagctcgc agaccgagag gccgatttta ctccttcaga 901 agaggacggt ggcaccacct caagcgactt cgacgaagat ataaatttcg 951 acatcggagg agacagcggt atcgtagacg agcttttagg aaggcctttc 1001 acaacccccg ccccggtacg tatagtgtga ggctgccgaa cccccaatct 1051 actatgacta tccgcttcca aggggtcatc tttctcacgg aaggactcat 1101 tctgcctaaa aacagcacag cggggggcta tgcagaccac atgtacgggg 1151 cgagagtcgc caagatctct gtgaacctga aagagttcct gctagcctca 1201 atgaacctga catacgtgag caaaatcgga ggccccatcg ccggtgagtt 1251 gattgcggac gggtctaaat cacaagccgc ggacaattgg cctaattgct 1301 ggctgccgct agataataac gtgccctccg ctacaccatc ggcatggtgg 1351 agatgggcct taatgatgat gcagcccacg gactcttgcc ggttctttaa 1401 tcacccaaag cagatgaccc tgcaagacat gggtcgcatg tttgggggct 1451 ggcacctgtt ccgacacatt gaaacccgct ttcagctcct tgccactaag 1501 aatgagggat ccttcagccc cgtggcgagt cttctctccc agggagagta 1551 cctcacgcgt cgggacgatg ttaagtacag cagcgatcac cagaaccggt 1601 ggcaaaaagg cggacaaccg atgacggggg gcattgctta tgcgaccggg 1651 aaaatgagac ccgacgagca acagtaccct gctatgcccc cagacccccc 1701 gatcatcacc gctactacag cgcaaggcac gcaagtccgc tgcatgaata 1751 gcacgcaagc ttggtggtca tgggacacat atatgagctt tgcaacactc 1801 acagcactcg gtgcacaatg gtcttttcct ccagggcaac gttcagtttc 1851 tagacggtcc ttcaaccacc acaaggcgag aggagccggg gaccccaagg 1901 gccagagatg gcacacgctg gtgccgctcg gcacggagac catcaccgac 1951 agctacatgt cagcacccgc atcagagctg gacactaatt tctttacgct 2001 ttacgtagcg caaggcacaa ataagtcgca acagtacaag ttcggcacag 2051 ctacatacgc gctaaaggag ccggtaatga agagcgatgc atgggcagtg 2101 gtacgcgtcc agtcggtctg gcagctgggt aacaggcaga ggccataccc 2151 atgggacgtc aactgggcga acagcaccat gtactggggg acgcagccct 2201 gaaaaggggg gggggctaaa gccccccccc cttaaacccc cccctggggg 2251 ggattccccc ccagaccccc cctttatata gcactcaata aacgcagaaa 2301 atagatttat cgcactatc