Sequence of DPV Chicken anemia virus

Chicken anemia virus ORF1 (Cux-1), ORF2 (Cux-1), and ORF3 (Cux-1) genes, complete cds.

ACC No: M55918

Dated: 2005-10-08 | Length: 2319 | CRC: 1258056704

                
ID   M55918     standard; genomic DNA; VRL; 2319 BP.
XX
AC   M55918;
XX
SV   M55918.1
XX
DT   07-JUN-1991 (Rel. 28, Created)
DT   08-OCT-2005 (Rel. 85, Last updated, Version 7)
XX
DE   Chicken anemia virus ORF1 (Cux-1), ORF2 (Cux-1), and ORF3 (Cux-1) genes,
DE   complete cds.
XX
KW   .
XX
OS   Chicken anemia virus
OC   Viruses; ssDNA viruses; Circoviridae; Gyrovirus.
XX
RN   [1]
RP   1-2319
RX   PUBMED; 1851873.
RA   Noteborn M.H.M., de Boer G.F., Roozelaar D.J., Karreman C., Kranenburg O.,
RA   Vos J.G., Jeurissen S.H.M., Hoeben R.C., Zantema A., Koch G.,
RA   van Ormondt H., van der Eb A.J.;
RT   "Characterization of cloned chicken anemia virus DNA that contains all
RT   elements for the infectious replication cycle";
RL   J. Virol. 65(6):3131-3139(1991).
XX
CC   Original source text: Chicken anemia virus (individual_isolate
CC   Cuxhaven-1) DNA.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2319
FT                   /db_xref="taxon:12618"
FT                   /mol_type="genomic DNA"
FT                   /organism="Chicken anemia virus"
FT                   /isolate="Cuxhaven-1"
FT   gene            144. .2292
FT                   /gene="Cux-1"
FT   repeat_region   144. .260
FT                   /note="21-bp repeats with ATF sites"
FT                   /rpt_unit=219. .239
FT                   /rpt_unit=240. .260
FT                   /rpt_unit=165. .185
FT                   /rpt_unit=186. .206
FT                   /rpt_unit=144. .164
FT   repeat_unit     144. .164
FT                   /gene="Cux-1"
FT   repeat_unit     165. .185
FT                   /gene="Cux-1"
FT   repeat_unit     186. .206
FT                   /gene="Cux-1"
FT   repeat_unit     219. .239
FT                   /gene="Cux-1"
FT   repeat_unit     240. .260
FT                   /gene="Cux-1"
FT   CAAT_signal     261. .266
FT                   /gene="Cux-1"
FT   promoter        305. .310
FT                   /note="SP1 box"
FT                   /gene="Cux-1"
FT   TATA_signal     323. .328
FT                   /gene="Cux-1"
FT   CDS             380. .1030
FT                   /codon_start=1
FT                   /db_xref="InterPro:IPR006945"
FT                   /db_xref="UniProtKB/Swiss-Prot:P69484"
FT                   /note="ORF1"
FT                   /gene="Cux-1"
FT                   /protein_id="AAA91822.1"
FT                   /translation="MHGNGGQPAAGGSESALSREGQPGPSGAAQGQVISNERSPRRYST
FT                   RTINGVQATNKFTAVGNPSLQRDPDWYRWNYNHSIAVWLRECSRSHAKICNCGQFRKHW
FT                   FQECAGLEDRSTQASLEEAILRPLRVQGKRAKRKLDYHYSQPTPNRKKAYKTVRWQDEL
FT                   ADREADFTPSEEDGGTTSSDFDEDINFDIGGDSGIVDELLGRPFTTPAPVRIV"
FT   CDS             486. .851
FT                   /codon_start=1
FT                   /db_xref="GOA:Q99152"
FT                   /db_xref="InterPro:IPR006858"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q99152"
FT                   /note="ORF2"
FT                   /gene="Cux-1"
FT                   /protein_id="AAA91823.1"
FT                   /translation="MNALQEDTPPGPSTVFRPPTSSRPLETPHCREIRIGIAGITITLS
FT                   LCGCANARAPTLRSATADNSESTGFKNVPDLRTDQPKPPSKKRSCDPSEYRVSELKESL
FT                   ITTTPSRPRTAKRRIRL"
FT   CDS             853. .2202
FT                   /codon_start=1
FT                   /db_xref="GOA:Q99153"
FT                   /db_xref="InterPro:IPR007291"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q99153"
FT                   /note="ORF3"
FT                   /gene="Cux-1"
FT                   /protein_id="AAA91824.1"
FT                   /translation="MARRARRPRGRFYSFRRGRWHHLKRLRRRYKFRHRRRQRYRRRAF
FT                   RKAFHNPRPGTYSVRLPNPQSTMTIRFQGVIFLTEGLILPKNSTAGGYADHMYGARVAK
FT                   ISVNLKEFLLASMNLTYVSKIGGPIAGELIADGSKSQAADNWPNCWLPLDNNVPSATPS
FT                   AWWRWALMMMQPTDSCRFFNHPKQMTLQDMGRMFGGWHLFRHIETRFQLLATKNEGSFS
FT                   PVASLLSQGEYLTRRDDVKYSSDHQNRWQKGGQPMTGGIAYATGKMRPDEQQYPAMPPD
FT                   PPIITATTAQGTQVRCMNSTQAWWSWDTYMSFATLTALGAQWSFPPGQRSVSRRSFNHH
FT                   KARGAGDPKGQRWHTLVPLGTETITDSYMSAPASELDTNFFTLYVAQGTNKSQQYKFGT
FT                   ATYALKEPVMKSDAWAVVRVQSVWQLGNRQRPYPWDVNWANSTMYWGTQP"
FT   polyA_signal    2287. .2292
FT                   /gene="Cux-1"
XX
SQ   Sequence 2319 BP; 591 A; 666 C; 643 G; 419 T; 0 other;

M55918 Length: 2319  08-OCT-2005  Type: N  Check: 3701  ..

       1  gaattccgag tggttactat tccatcacca ttctagcctg tacacagaaa
      51  gtcaagatgg acgaatcgct cgacttcgct cgcgattcgt cgaaggcggg
     101  gggccggagg ccccccggtg gcccccctcc aacgagtgga gcacgtacag
     151  gggggtacgt catccgtaca ggggggtacg tcatccgtac aggggggtac
     201  gtcacaaaga ggcgttcccg tacagggggg tacgtcacgc gtacaggggg
     251  gtacgtcaca gccaatcaaa agctgccacg ttgcgaaagt gacgtttcga
     301  aaatgggcgg cgcaagcctc tctatatatt gagcgcacat accggtcggc
     351  agtaggtata cgcaaggcgg tccgggtgga tgcacgggaa cggcggacaa
     401  ccggccgctg ggggcagtga atcggcgctt agccgagagg ggcaacctgg
     451  gcccagcgga gccgcgcagg ggcaagtaat ttcaaatgaa cgctctccaa
     501  gaagatactc cacccggacc atcaacggtg ttcaggccac caacaagttc
     551  acggccgttg gaaacccctc actgcagaga gatccggatt ggtatcgctg
     601  gaattacaat cactctatcg ctgtgtggct gcgcgaatgc tcgcgctccc
     651  acgctaagat ctgcaactgc ggacaattca gaaagcactg gtttcaagaa
     701  tgtgccggac ttgaggaccg atcaacccaa gcctccctcg aagaagcgat
     751  cctgcgaccc ctccgagtac agggtaagcg agctaaaaga aagcttgatt
     801  accactactc ccagccgacc ccgaaccgca aaaaggcgta taagactgta
     851  agatggcaag acgagctcgc agaccgagag gccgatttta ctccttcaga
     901  agaggacggt ggcaccacct caagcgactt cgacgaagat ataaatttcg
     951  acatcggagg agacagcggt atcgtagacg agcttttagg aaggcctttc
    1001  acaacccccg ccccggtacg tatagtgtga ggctgccgaa cccccaatct
    1051  actatgacta tccgcttcca aggggtcatc tttctcacgg aaggactcat
    1101  tctgcctaaa aacagcacag cggggggcta tgcagaccac atgtacgggg
    1151  cgagagtcgc caagatctct gtgaacctga aagagttcct gctagcctca
    1201  atgaacctga catacgtgag caaaatcgga ggccccatcg ccggtgagtt
    1251  gattgcggac gggtctaaat cacaagccgc ggacaattgg cctaattgct
    1301  ggctgccgct agataataac gtgccctccg ctacaccatc ggcatggtgg
    1351  agatgggcct taatgatgat gcagcccacg gactcttgcc ggttctttaa
    1401  tcacccaaag cagatgaccc tgcaagacat gggtcgcatg tttgggggct
    1451  ggcacctgtt ccgacacatt gaaacccgct ttcagctcct tgccactaag
    1501  aatgagggat ccttcagccc cgtggcgagt cttctctccc agggagagta
    1551  cctcacgcgt cgggacgatg ttaagtacag cagcgatcac cagaaccggt
    1601  ggcaaaaagg cggacaaccg atgacggggg gcattgctta tgcgaccggg
    1651  aaaatgagac ccgacgagca acagtaccct gctatgcccc cagacccccc
    1701  gatcatcacc gctactacag cgcaaggcac gcaagtccgc tgcatgaata
    1751  gcacgcaagc ttggtggtca tgggacacat atatgagctt tgcaacactc
    1801  acagcactcg gtgcacaatg gtcttttcct ccagggcaac gttcagtttc
    1851  tagacggtcc ttcaaccacc acaaggcgag aggagccggg gaccccaagg
    1901  gccagagatg gcacacgctg gtgccgctcg gcacggagac catcaccgac
    1951  agctacatgt cagcacccgc atcagagctg gacactaatt tctttacgct
    2001  ttacgtagcg caaggcacaa ataagtcgca acagtacaag ttcggcacag
    2051  ctacatacgc gctaaaggag ccggtaatga agagcgatgc atgggcagtg
    2101  gtacgcgtcc agtcggtctg gcagctgggt aacaggcaga ggccataccc
    2151  atgggacgtc aactgggcga acagcaccat gtactggggg acgcagccct
    2201  gaaaaggggg gggggctaaa gccccccccc cttaaacccc cccctggggg
    2251  ggattccccc ccagaccccc cctttatata gcactcaata aacgcagaaa
    2301  atagatttat cgcactatc