Sequence of DPV Chicken anemia virus
Chicken anemia virus ORF1 (Cux-1), ORF2 (Cux-1), and ORF3 (Cux-1) genes, complete cds.
ACC No: M55918
Dated: 2005-10-08 | Length: 2319 | CRC: 1258056704
ID M55918 standard; genomic DNA; VRL; 2319 BP.
XX
AC M55918;
XX
SV M55918.1
XX
DT 07-JUN-1991 (Rel. 28, Created)
DT 08-OCT-2005 (Rel. 85, Last updated, Version 7)
XX
DE Chicken anemia virus ORF1 (Cux-1), ORF2 (Cux-1), and ORF3 (Cux-1) genes,
DE complete cds.
XX
KW .
XX
OS Chicken anemia virus
OC Viruses; ssDNA viruses; Circoviridae; Gyrovirus.
XX
RN [1]
RP 1-2319
RX PUBMED; 1851873.
RA Noteborn M.H.M., de Boer G.F., Roozelaar D.J., Karreman C., Kranenburg O.,
RA Vos J.G., Jeurissen S.H.M., Hoeben R.C., Zantema A., Koch G.,
RA van Ormondt H., van der Eb A.J.;
RT "Characterization of cloned chicken anemia virus DNA that contains all
RT elements for the infectious replication cycle";
RL J. Virol. 65(6):3131-3139(1991).
XX
CC Original source text: Chicken anemia virus (individual_isolate
CC Cuxhaven-1) DNA.
XX
FH Key Location/Qualifiers
FH
FT source 1. .2319
FT /db_xref="taxon:12618"
FT /mol_type="genomic DNA"
FT /organism="Chicken anemia virus"
FT /isolate="Cuxhaven-1"
FT gene 144. .2292
FT /gene="Cux-1"
FT repeat_region 144. .260
FT /note="21-bp repeats with ATF sites"
FT /rpt_unit=219. .239
FT /rpt_unit=240. .260
FT /rpt_unit=165. .185
FT /rpt_unit=186. .206
FT /rpt_unit=144. .164
FT repeat_unit 144. .164
FT /gene="Cux-1"
FT repeat_unit 165. .185
FT /gene="Cux-1"
FT repeat_unit 186. .206
FT /gene="Cux-1"
FT repeat_unit 219. .239
FT /gene="Cux-1"
FT repeat_unit 240. .260
FT /gene="Cux-1"
FT CAAT_signal 261. .266
FT /gene="Cux-1"
FT promoter 305. .310
FT /note="SP1 box"
FT /gene="Cux-1"
FT TATA_signal 323. .328
FT /gene="Cux-1"
FT CDS 380. .1030
FT /codon_start=1
FT /db_xref="InterPro:IPR006945"
FT /db_xref="UniProtKB/Swiss-Prot:P69484"
FT /note="ORF1"
FT /gene="Cux-1"
FT /protein_id="AAA91822.1"
FT /translation="MHGNGGQPAAGGSESALSREGQPGPSGAAQGQVISNERSPRRYST
FT RTINGVQATNKFTAVGNPSLQRDPDWYRWNYNHSIAVWLRECSRSHAKICNCGQFRKHW
FT FQECAGLEDRSTQASLEEAILRPLRVQGKRAKRKLDYHYSQPTPNRKKAYKTVRWQDEL
FT ADREADFTPSEEDGGTTSSDFDEDINFDIGGDSGIVDELLGRPFTTPAPVRIV"
FT CDS 486. .851
FT /codon_start=1
FT /db_xref="GOA:Q99152"
FT /db_xref="InterPro:IPR006858"
FT /db_xref="UniProtKB/Swiss-Prot:Q99152"
FT /note="ORF2"
FT /gene="Cux-1"
FT /protein_id="AAA91823.1"
FT /translation="MNALQEDTPPGPSTVFRPPTSSRPLETPHCREIRIGIAGITITLS
FT LCGCANARAPTLRSATADNSESTGFKNVPDLRTDQPKPPSKKRSCDPSEYRVSELKESL
FT ITTTPSRPRTAKRRIRL"
FT CDS 853. .2202
FT /codon_start=1
FT /db_xref="GOA:Q99153"
FT /db_xref="InterPro:IPR007291"
FT /db_xref="UniProtKB/Swiss-Prot:Q99153"
FT /note="ORF3"
FT /gene="Cux-1"
FT /protein_id="AAA91824.1"
FT /translation="MARRARRPRGRFYSFRRGRWHHLKRLRRRYKFRHRRRQRYRRRAF
FT RKAFHNPRPGTYSVRLPNPQSTMTIRFQGVIFLTEGLILPKNSTAGGYADHMYGARVAK
FT ISVNLKEFLLASMNLTYVSKIGGPIAGELIADGSKSQAADNWPNCWLPLDNNVPSATPS
FT AWWRWALMMMQPTDSCRFFNHPKQMTLQDMGRMFGGWHLFRHIETRFQLLATKNEGSFS
FT PVASLLSQGEYLTRRDDVKYSSDHQNRWQKGGQPMTGGIAYATGKMRPDEQQYPAMPPD
FT PPIITATTAQGTQVRCMNSTQAWWSWDTYMSFATLTALGAQWSFPPGQRSVSRRSFNHH
FT KARGAGDPKGQRWHTLVPLGTETITDSYMSAPASELDTNFFTLYVAQGTNKSQQYKFGT
FT ATYALKEPVMKSDAWAVVRVQSVWQLGNRQRPYPWDVNWANSTMYWGTQP"
FT polyA_signal 2287. .2292
FT /gene="Cux-1"
XX
SQ Sequence 2319 BP; 591 A; 666 C; 643 G; 419 T; 0 other;
M55918 Length: 2319 08-OCT-2005 Type: N Check: 3701 ..
1 gaattccgag tggttactat tccatcacca ttctagcctg tacacagaaa
51 gtcaagatgg acgaatcgct cgacttcgct cgcgattcgt cgaaggcggg
101 gggccggagg ccccccggtg gcccccctcc aacgagtgga gcacgtacag
151 gggggtacgt catccgtaca ggggggtacg tcatccgtac aggggggtac
201 gtcacaaaga ggcgttcccg tacagggggg tacgtcacgc gtacaggggg
251 gtacgtcaca gccaatcaaa agctgccacg ttgcgaaagt gacgtttcga
301 aaatgggcgg cgcaagcctc tctatatatt gagcgcacat accggtcggc
351 agtaggtata cgcaaggcgg tccgggtgga tgcacgggaa cggcggacaa
401 ccggccgctg ggggcagtga atcggcgctt agccgagagg ggcaacctgg
451 gcccagcgga gccgcgcagg ggcaagtaat ttcaaatgaa cgctctccaa
501 gaagatactc cacccggacc atcaacggtg ttcaggccac caacaagttc
551 acggccgttg gaaacccctc actgcagaga gatccggatt ggtatcgctg
601 gaattacaat cactctatcg ctgtgtggct gcgcgaatgc tcgcgctccc
651 acgctaagat ctgcaactgc ggacaattca gaaagcactg gtttcaagaa
701 tgtgccggac ttgaggaccg atcaacccaa gcctccctcg aagaagcgat
751 cctgcgaccc ctccgagtac agggtaagcg agctaaaaga aagcttgatt
801 accactactc ccagccgacc ccgaaccgca aaaaggcgta taagactgta
851 agatggcaag acgagctcgc agaccgagag gccgatttta ctccttcaga
901 agaggacggt ggcaccacct caagcgactt cgacgaagat ataaatttcg
951 acatcggagg agacagcggt atcgtagacg agcttttagg aaggcctttc
1001 acaacccccg ccccggtacg tatagtgtga ggctgccgaa cccccaatct
1051 actatgacta tccgcttcca aggggtcatc tttctcacgg aaggactcat
1101 tctgcctaaa aacagcacag cggggggcta tgcagaccac atgtacgggg
1151 cgagagtcgc caagatctct gtgaacctga aagagttcct gctagcctca
1201 atgaacctga catacgtgag caaaatcgga ggccccatcg ccggtgagtt
1251 gattgcggac gggtctaaat cacaagccgc ggacaattgg cctaattgct
1301 ggctgccgct agataataac gtgccctccg ctacaccatc ggcatggtgg
1351 agatgggcct taatgatgat gcagcccacg gactcttgcc ggttctttaa
1401 tcacccaaag cagatgaccc tgcaagacat gggtcgcatg tttgggggct
1451 ggcacctgtt ccgacacatt gaaacccgct ttcagctcct tgccactaag
1501 aatgagggat ccttcagccc cgtggcgagt cttctctccc agggagagta
1551 cctcacgcgt cgggacgatg ttaagtacag cagcgatcac cagaaccggt
1601 ggcaaaaagg cggacaaccg atgacggggg gcattgctta tgcgaccggg
1651 aaaatgagac ccgacgagca acagtaccct gctatgcccc cagacccccc
1701 gatcatcacc gctactacag cgcaaggcac gcaagtccgc tgcatgaata
1751 gcacgcaagc ttggtggtca tgggacacat atatgagctt tgcaacactc
1801 acagcactcg gtgcacaatg gtcttttcct ccagggcaac gttcagtttc
1851 tagacggtcc ttcaaccacc acaaggcgag aggagccggg gaccccaagg
1901 gccagagatg gcacacgctg gtgccgctcg gcacggagac catcaccgac
1951 agctacatgt cagcacccgc atcagagctg gacactaatt tctttacgct
2001 ttacgtagcg caaggcacaa ataagtcgca acagtacaag ttcggcacag
2051 ctacatacgc gctaaaggag ccggtaatga agagcgatgc atgggcagtg
2101 gtacgcgtcc agtcggtctg gcagctgggt aacaggcaga ggccataccc
2151 atgggacgtc aactgggcga acagcaccat gtactggggg acgcagccct
2201 gaaaaggggg gggggctaaa gccccccccc cttaaacccc cccctggggg
2251 ggattccccc ccagaccccc cctttatata gcactcaata aacgcagaaa
2301 atagatttat cgcactatc