Sequence of DPV Leishmania RNA virus 1-1
Leishmania RNA virus 1-1 putative coat protein and RNA dependent RNA polymerase genes, complete cds.
ACC No: M92355
Dated: 2006-11-14 | Length: 5284 | CRC: -1747542272
ID M92355; SV 1; linear; genomic RNA; STD; VRL; 5284 BP.
XX
AC M92355;
XX
DT 01-JUL-1992 (Rel. 32, Created)
DT 14-NOV-2006 (Rel. 89, Last updated, Version 10)
XX
DE Leishmania RNA virus 1-1 putative coat protein and RNA dependent RNA
DE polymerase genes, complete cds.
XX
KW .
XX
OS Leishmania RNA virus 1 - 1
OC Viruses; dsRNA viruses; Totiviridae; Leishmaniavirus.
XX
RN [1]
RP 1-5284
RX PUBMED; 1382295.
RA Stuart K.D., Weeks R., Guilbride L., Myler P.J.;
RT "Molecular organization of Leishmania RNA virus 1";
RL Proc. Natl. Acad. Sci. U.S.A. 89(18):8596-8600(1992).
XX
FH Key Location/Qualifiers
FH
FT source 1. .5284
FT /organism="Leishmania RNA virus 1 - 1"
FT /mol_type="genomic RNA"
FT /db_xref="taxon:58103"
FT repeat_region complement(1. .3)
FT /rpt_type=TANDEM
FT /note="UCA repeat; putative"
FT variation 1
FT /replace="c"
FT stem_loop 2. .34
FT /note="putative"
FT CDS 15. .233
FT /codon_start=1
FT /product="ORF1"
FT /note="probably does not have protein coding function"
FT /db_xref="UniProtKB/TrEMBL:Q83096"
FT /protein_id="AAB50022.1"
FT /translation="MPMSLDSLAVGMVALLVDYYSKALRASLNSTGIDRRWGDQWPSTV
FT ELTGRGVIEWESPTFCICSSSRSTAIV"
FT CDS 448. .2673
FT /codon_start=1
FT /product="putative coat protein"
FT /note="ORF2; putative"
FT /db_xref="GOA:Q02358"
FT /db_xref="InterPro:IPR008871"
FT /db_xref="UniProtKB/TrEMBL:Q02358"
FT /protein_id="AAB50023.1"
FT /translation="MSDTPNSDKVACGRKPMFCEIIKLANRKRLILDTTGERVYDARIN
FT YCSTADATVQADCHIYWRLKLRRTDAVFEEYTGQGYALDTASYPQQYADIIRGYYSKHV
FT SSALAANTQHFVNVLAMLRHAGACIAHYCMTGKIDFDILSKKKHKNKEVVTLSSADSLS
FT FLPHSALYLPSALRASDPEIFNVLYLLGCACDASIAMDNIANTSGAAKYAMPHYNPLQL
FT SHALHVTIFYMLGLMDSCGYGEDAVLALTAGLHSVTTVIAHSDEGAITRDALRELSYTQ
FT PYGTMPVPIAGYFQHINVLFTTQPAWDQFAGIWDYVILATAALVHLSDPGMTVNDVTYP
FT TTLTTKVASVDGRNSDIAAQMMHSATRFCDIYIENLCLFWGVVANPDGNASQALLHAFN
FT VVACGTEPNRHLEMNVMAPWYWVESSALFSDYSQFRSPISSAGYGPQSIYGARLVLAAT
FT NSLEFTGEAGDYSAYRFEWTTMRHNPLFNILNKRVGDGLANVDFRLRPFNEWLLEGQPS
FT RRSCDAVGHGTPTATCNHKTPNRNTVDEFIWGSTSCDLFHPAELTSYTAVCVRFRNYLS
FT EADGDVRVLNTPTREVIEGNVVTRCDGIRCLDSNKRIQHVPEVARRYCMMARYLQARTF
FT GALTIGDDIIRGFDKVDKVVKMHKSNNRLGQMPLIDVTGLCQPMIETSTARASMTTRID
FT PNRLAAATARIELPLAPRCTSSLIPSSDAVPEPEPHVGEPGNGSGCA"
FT variation 452
FT /replace="t"
FT /note="probable subcloning error"
FT variation 1931
FT /replace="g"
FT variation 2102
FT /replace="a"
FT variation 2102
FT /replace="t"
FT variation 2208
FT /replace="g"
FT variation 2561
FT /replace="c"
FT CDS 2612. .5236
FT /codon_start=1
FT /standard_name="RDRP"
FT /product="RNA dependent RNA polymerase"
FT /note="The RDRP (ORF3) is possibly expressed as a fusion
FT proteinwith the coat protein (ORF2) due to a +1 frameshift
FT in theoverlap between ORFs; ORF3; putative"
FT /db_xref="GOA:Q02382"
FT /db_xref="InterPro:IPR001795"
FT /db_xref="UniProtKB/TrEMBL:Q02382"
FT /protein_id="AAB50024.1"
FT /translation="MQCPNQNHMLVNRAMVVAALDSFEDARRIISGVLDLSRLTNTSVK
FT GQHTNDTNYFSRYSNFFSQMPAIILNQLKCCIKAQVDDAVKMVLQKAKKVEVSKPVEKM
FT LTFTTLNTYLGYPESTGCVMEYTEEQSGPIAAKLLITLLSSTLNAMVRPKSDPNISQNK
FT IPRHYYQLKVHVGAQKKVNLTAIEVIRGCQHECSVVYCEFVRYSAYFAGLYDDQVAAIL
FT LYAVAAHNVQGFGARFCVLWALMCVRIAGFADDINIYIKHRGMSGLLPQLVEMKCLLGR
FT GVNEIDVETEARRRLDVGSLSMQRLDENELRAAVRLIYSEELRRPVTYPLICDFWSSRW
FT LWAANGSHSRALEHAHPELATRKEGQAYRKAVMEQWQHNPMDRWDGTVYVTPSAKLEHG
FT KTRLLLACDTLSYMWFEYALRPVERIWENSNVILDPGSMGNCGIATRINGWRNGMPGQS
FT FFAVDYDDFNSQHTLMSQKIVFEELFHHIGYNASWVKTLVDSFDSMELWIKGKCAGIMA
FT GTLMSGHRATSFINSVLNRAYIICAGGHVPTSMHVGDDILMSCTLGHADNLIANLNRKG
FT VRLNASKQVFSKTSGEFLRVAHREHTSHGYLARVISSAVSGNWVSDHTLNQQEALMNAI
FT VCCRGILNRSLPGEKNPVVRVISRSVSKRTKIEEKTIRLLLSGRACLKGGVVYGEQTNY
FT IQVYRINCRVERSEEKLPPYRHATEDYLNNHLADIEVMAVRQYGSDIADIMAQASWKKS
FT MSTEGAEDVSRLSLQRDKTLPCLHCITEKETSLLPVRYGLFSSYPILMMLKDRIPIKEA
FT LKLAVTIGYRPQPNSDLELDLWGESNNSCAIEGVLPYNEATSLAQKLPCGGVVIQVIHN
FT VYV"
FT stem_loop 2618. .2653
FT /note="possible pseudoknot involving nts 2655-2656,
FT 2660-2663, and2664-2668. May be involved in possible
FT translationalframeshift; putative"
FT variation 2826
FT /replace="t"
FT variation 4168
FT /replace="a"
FT variation 4192
FT /replace="a"
FT variation 4348
FT /replace="g"
FT variation 4617
FT /replace="g"
FT /note="probable subcloning error"
FT variation 4690
FT /replace="c"
FT variation 4710
FT /replace="c"
FT variation 4731
FT /replace="t"
FT variation 4797
FT /replace="g"
FT variation 4894
FT /replace="c"
FT variation 5072
FT /replace="c"
FT variation 5141
FT /replace="t"
FT stem_loop 5201. .5240
FT /note="putative"
FT stem_loop 5251. .5276
FT /note="putative"
FT repeat_region 5275. .5284
FT /rpt_type=TANDEM
FT /rpt_unit_range=5275. .5277
FT /note="putative"
FT variation 5280
FT /replace="t"
XX
SQ Sequence 5284 BP; 1466 A; 1113 C; 1341 G; 1364 T; 0 other;
m92355 Length: 5284 14-NOV-2006 Type: N Check: 8635 ..
1 tgaattcaaa cgagatgcct atgagtttgg attcgctagc tgttgggatg
51 gtagcgttac ttgtggacta ctacagtaaa gcattaaggg ctagccttaa
101 ctccactgga attgatagaa ggtggggaga tcagtggcct tcaacggttg
151 aactgactgg acggggggta atcgagtggg agtcccccac attctgcatt
201 tgcagttcct cacgatccac agcgatcgtc tgattgtacc caggttactg
251 ccgcgagcgt aagggagtgt tttggcagac acagtctaag acgctgacta
301 cggtcggtgt caaggatccg aaacgtaagc aagtttcttg ttactattga
351 tcaacagcta catcctacaa caacagcaaa catatcgtcc atcctcaacc
401 caagaattcc acgtgaacat accctgagta tacaattctt ggacaggatg
451 tctgatacac caaactctga taaagtcgcg tgtggaagga agcccatgtt
501 ctgcgagatt ataaaactcg cgaacaggaa gcggttgatt ttggatacaa
551 ctggtgagcg agtgtacgac gcccgtataa attactgctc aacggcagat
601 gcgaccgttc aagccgattg ccatatatac tggcgcttga agctgcgacg
651 cactgatgcc gtttttgaag aatatactgg tcagggctac gcgctcgaca
701 ctgcttcata cccccaacag tatgctgata tcatcagggg gtattacagt
751 aagcatgtgt caagtgcact agctgccaac acccaacact ttgtgaacgt
801 tttggctatg ttacgtcatg ctggcgcttg tattgcgcat tattgcatga
851 cagggaaaat tgattttgac atcttaagca aaaagaaaca taagaataaa
901 gaagttgtga cactaagcag tgctgacagt ttgagttttt tgcctcactc
951 ggctctatat ctgccttcag cgttacgtgc aagcgatcca gaaatattta
1001 atgttttgta cctgcttggt tgtgcttgtg atgcaagcat agcaatggac
1051 aacattgcga acacgagtgg ggcagctaaa tatgcgatgc ctcattataa
1101 cccactgcaa ctatctcacg ctctacatgt aaccatattc tatatgctgg
1151 gcttgatgga cagttgcggg tatggggaag atgcagtcct ggctttaacg
1201 gccggcctgc attctgtcac aacggtgata gcacacagtg atgaaggagc
1251 tataactcgt gatgctttaa gagagctctc atacacacag ccttatggca
1301 caatgccggt gccgattgca ggttactttc agcacataaa tgtgctgttt
1351 acaacacagc ctgcttggga tcaatttgca gggatttggg attatgtcat
1401 cttggcaact gctgcattgg ttcatctttc tgatcctgga atgacagtga
1451 atgacgtcac atatccgact acactcacta caaaagttgc atcagtagat
1501 ggccgtaaca gtgacatagc agcacagatg atgcacagtg ccacacggtt
1551 ctgtgatata tacattgaga acttatgtct cttttggggt gtggtcgcga
1601 acccagacgg gaatgcgagc caagctttac tgcacgcatt caatgtggtt
1651 gcttgtggca cagagccaaa caggcatctt gaaatgaatg tgatggcgcc
1701 atggtattgg gttgagagtt cagcactatt cagcgactac tcccaatttc
1751 gatcaccaat ctcctcagcg ggatatgggc cgcaaagcat ctacggtgca
1801 cgtttggtgc ttgctgccac caattctttg gaattcacgg gggaagcagg
1851 cgattactca gcataccgtt ttgagtggac gacaatgcgg cacaacccac
1901 tatttaacat tctcaataaa cgcgtcggtg atggccttgc taatgtggat
1951 ttcaggctgc gaccgtttaa tgagtggttg ctagaaggcc aaccgagccg
2001 tcgaagctgt gatgctgttg gccacggcac acctacggct acatgtaacc
2051 acaagactcc gaaccgtaac acagtggacg agtttatttg gggcagcact
2101 tcctgtgacc tctttcatcc agctgaacta acttcataca ccgccgtgtg
2151 tgttaggttc aggaattatt tgtctgaagc cgacggtgat gtacgcgtac
2201 taaacacacc cactagggag gttattgagg ggaatgttgt tacaaggtgt
2251 gacggcatac gctgcttgga cagcaacaag cgcatacaac atgttcctga
2301 ggtcgccaga cgttattgca tgatggcaag gtatttgcaa gcgcgtacct
2351 ttggagcgtt aactataggt gacgacataa tacgtggatt tgataaggtc
2401 gataaggttg tgaaaatgca taagagcaat aatagattag gtcaaatgcc
2451 cttaatagat gtaactggat tgtgtcagcc aatgattgaa acgagtactg
2501 ctcgtgcttc gatgactact cgcattgatc caaacagact tgctgcagcc
2551 acagctcgta tagaactacc actagcacct cgttgcacgt cctccctgat
2601 tccgtcatcc gatgcagtgc ccgaaccaga accacatgtt ggtgaaccgg
2651 gcaatggtag tggctgcgct tgatagtttt gaggacgcga gacgcattat
2701 tagtggggtt ctggatctat ctaggctgac taacacatct gttaaagggc
2751 aacatactaa cgatactaac tattttagta ggtacagtaa cttcttctcc
2801 caaatgccag cgattattct aaatcaactt aaatgctgca taaaggctca
2851 agttgatgac gccgtcaaaa tggttttaca gaaggcaaaa aaggtagaag
2901 ttagcaaacc ggtggagaaa atgctcacat tcactactct gaacacctat
2951 ctaggttatc cagaatctac ggggtgtgtt atggagtata ctgaggagca
3001 atcagggccg atcgcagcta agcttctcat aacattgctt tcttcaacac
3051 tgaatgcaat ggtccggcct aaaagtgacc caaatataag ccagaacaag
3101 ataccgcgtc actactacca gcttaaggtc catgtcggcg cccaaaagaa
3151 agtcaatctg acggcgatag aggtgatacg gggctgtcaa catgagtgta
3201 gtgtggtcta ttgtgaattt gtgcggtata gcgcgtattt cgcaggctta
3251 tatgacgatc aggtggccgc catcctatta tatgcggtgg cggcacataa
3301 cgtgcaagga tttggtgcgc ggttttgtgt gttgtgggct ttaatgtgtg
3351 ttcggatagc tggcttcgct gatgacatca acatatacat aaagcataga
3401 gggatgtctg gcttgctacc gcagttggtt gagatgaagt gtttgctggg
3451 gcgtggtgtc aatgagatcg atgttgagac tgaagcaaga agaaggctag
3501 atgtcggcag tctaagcatg cagaggctcg acgagaatga attgcgtgct
3551 gccgtccgac tgatctattc agaagaattg cgacggccgg tgacatatcc
3601 cctaatttgt gatttttggt cttctcgttg gctgtgggct gcaaatgggt
3651 cacattcacg agcattagaa catgcccatc ctgaacttgc aacaaggaaa
3701 gaaggacaag catacagaaa agccgtgatg gaacagtggc agcacaaccc
3751 aatggaccgt tgggatggga cagtgtatgt aactcctagc gcgaagcttg
3801 aacacgggaa gacgaggctg ttactcgcgt gtgatacgtt atcatacatg
3851 tggttcgaat atgcgctacg accggtggaa aggatttggg agaatagtaa
3901 tgttatcctg gatccaggaa gcatgggcaa ttgtgggata gctactagga
3951 ttaatggatg gcggaatggt atgcctgggc aaagcttttt tgcagtcgac
4001 tatgacgatt tcaactcaca acacaccctg atgtctcaaa aaatagtgtt
4051 tgaggagttg tttcatcaca tcgggtacaa tgcatcctgg gttaaaactt
4101 tagtagactc ttttgatagc atggaattgt ggataaaagg caagtgtgct
4151 ggcattatgg ctggaactct gatgagcggc catagggcta cgagctttat
4201 aaactctgtg ctcaacaggg catacattat atgtgcggga gggcatgtgc
4251 cgacatcgat gcacgtaggt gacgacatac tgatgtcttg cacgttaggc
4301 cacgctgata acttgatagc taatctcaac aggaagggag tcaggttaaa
4351 tgccagcaaa caagtcttca gcaagacgag tggtgagttt ttacgtgtgg
4401 cacaccgtga gcacacaagt catggttact tagcccgtgt tatcagcagt
4451 gctgtatctg gcaattgggt cagtgaccac actctcaatc agcaggaggc
4501 attgatgaat gccatagtgt gttgtcgtgg cattctcaac aggagcctac
4551 ctggtgagaa gaacccagta gttagggtaa tatcgaggag tgtgagtaag
4601 agaaccaaga tagaagaaaa aacaattaga ttattactaa gcggaagagc
4651 atgtcttaaa ggtggcgttg tatatggaga gcagacaaat tacattcaag
4701 tctataggat caactgccga gtagagagat ctgaagagaa actacctcca
4751 tataggcacg cgactgagga ctacctaaac aatcatttgg cagatattga
4801 agtaatggca gtaaggcaat atggatcgga catcgctgat atcatggccc
4851 aggcaagctg gaagaaatcc atgagtactg agggtgccga agatgtatcc
4901 cgcctatcac tgcaacgcga caaaactctg ccttgcttgc attgtattac
4951 agaaaaagaa acctctctat tgccagttcg ttacgggtta ttctctagtt
5001 atccaatcct catgatgctg aaggatagaa tacccataaa agaagctctc
5051 aagcttgcgg tgacgatcgg ctatcgacct caaccaaaca gtgatctgga
5101 gcttgatttg tggggtgaga gcaataattc gtgtgctatt gaaggagtgc
5151 ttccttacaa tgaagctacg tcattagcac aaaaacttcc ttgtggtggt
5201 gtcgttatac aggtaataca taacgtatac gtatagtgac taactacttg
5251 gaatatggca gaaagtgtca taaatcatca tcat