Sequence of DPV Saccharomyces cerevisiae virus L-BC (La)

Saccharomyces cerevisiae virus La, complete genome.

ACC No: U01060

Dated: 2000-03-04 | Length: 4615 | CRC: -1743262122

                !!NA_SEQUENCE 1.0
ID   SCU01060   standard; RNA; VRL; 4615 BP.
XX
AC   U01060;
XX
SV   U01060.1
XX
DT   13-DEC-1994 (Rel. 42, Created)
DT   04-MAR-2000 (Rel. 63, Last updated, Version 6)
XX
DE   Saccharomyces cerevisiae virus La, complete genome.
XX
KW   .
XX
OS   Saccharomyces cerevisiae virus La
OC   Viruses; dsRNA viruses; Totiviridae; Totivirus.
XX
RN   [1]
RP   1-4615
RX   MEDLINE; 94111988.
RA   Bruenn J.A.;
RT   "A closely related group of RNA-dependent RNA polymerases from
RT   double-stranded RNA viruses";
RL   Nucleic Acids Res. 21(24):5667-5669(1993).
XX
RN   [2]
RP   1-4615
RX   MEDLINE; 96182949.
RA   Park C.M., Lopinski J.D., Masuda J., Tzeng T.H., Bruenn J.A.;
RT   "A second double-stranded RNA virus from yeast";
RL   Virology 216(2):451-454(1996).
XX
RN   [3]
RP   1-4615
RA   Bruenn J.A.;
RT   ;
RL   Submitted (25-AUG-1993) to the EMBL/GenBank/DDBJ databases.
RL   Jeremy A. Bruenn, Biological Sciences, State University of New York at
RL   Buffalo, SUNY/Buffalo, Buffalo, NY 14260, USA
XX
DR   SPTREMBL; Q87026; Q87026.
DR   SPTREMBL; Q87027; Q87027.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .4615
FT                   /db_xref="taxon:42478"
FT                   /note="Saccharomyces cerevisiae virus ScV-La"
FT                   /organism="Saccharomyces cerevisiae virus La"
FT                   /specific_host="Saccharomyces cerevisiae"
FT                   /lab_host="Saccharomyces cerevisiae"
FT   CDS             24. .2117
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:Q87026"
FT                   /gene="cap"
FT                   /product="capsid"
FT                   /protein_id="AAB02145.1"
FT                   /translation="MSSLLNSLLPEYFKPKTNLNINSSRVQYGFNARIDMQYEDDSGTR
FT                   KGSRPNAFMSNTVAFIGNYEGIIVDDIPILDGLRADIFDTHGDLDMGLVEDALSKSTMI
FT                   RRNVPTYTAYASELLYKRNLTSLFYNMLRLYYIKKWGSIKYEKDAIFYDNGHACLLNRQ
FT                   LFPKSRDASLESSLSLPEAEIAMLDPGLEFPEEDVPAILWHGRVSSRATCILGQACSEF
FT                   APLAPFSIAHYSPQLTRKLFVNAPAGIEPSSGRYTHEDVKDAITILVSANQAYTDFEAA
FT                   YLMLAQTLVSPVPRTAEASAWFINAGMVNMPTLSCANGYYPALTNVNPYHRLDTWKDTL
FT                   NHWVAYPDMLFYHSVAMIESCYVELGNVARVSDSDAINKYTFTELSVQGRPVMNRGIIV
FT                   DLTLVAMRTGREISLPYPVSCGLTRTDALLQGTEIHVPVVVKDIDMPQYYNAIDKDVIE
FT                   GQETVIKVKQLPPAMYPIYTYGINTTEFYSDHFEDQVQVEMAPIDNGKAVFNDARKFSK
FT                   FMSIMRMMGNDVTATDLVTGRKVSNWADNSSGRFLYTDVKYEGQTAFLVDMDTVKARDH
FT                   CWVSIVDPNGTMNLSYKMTNFRAAMFSRNKPLYMTGGSVRTIATGNYRDAAERLRAMDE
FT                   TLRLKPFKITEKLDFRVAAYAIPSLSGSNMPSLHHQEQLQISEVDAEPINPIGEDELPP
FT                   DIE"
FT   misc_feature    1970
FT                   /gene="cap"
FT                   /function="translational frameshift site"
FT   CDS             <1970. .4561
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:Q87027"
FT                   /gene="pol"
FT                   /product="RNA polymerase"
FT                   /protein_id="AAB02146.1"
FT                   /translation="FSCSSLRDTKFVGQQYAILTPSGTTTDIRSGRGTNQSYRRGRTST
FT                   GYRIGVEDDEDLDIGTVKYIVPLYLNGDNVAQNCLEATHVLIKACSIANRIVDDGEGHC
FT                   FTQQGLAQQWIFHRGEMIFVKAVRIGQLNAYYVDYKNVTNYSLKTAAQVGATISNNLRH
FT                   GFVDNQQDAYTRLVANYSDTRKWIRDNFTYNYNMEKEKYRITQYHHTHVRLKDLFPSRK
FT                   IVKLEGYEALLAMMLDRFNNIESTHVTFFTYLRALPDREKEVFISLVLNYNGLGREWLK
FT                   SEGVRAKQAQGTVKYDMSKLFELNVLENGVDEEVDWEKEKRNRSDIKTVNISYAKVLEH
FT                   CRELFIMARAEGKRPMRMKWQEYWRQRAVIMPGGSVHSQHPVEQDVIRVLPREIRSKKG
FT                   VASVMPYKEQKYFTSRRPEIHAYTSTKYEWGKVRALYGCDFSSHTMADFGLLQCEDTFP
FT                   GFVPTGSYANEDYVRTRIAGTHSLIPFCYDFDDFNSQHSKEAMQAVIDAWISVYHDKLT
FT                   DDQIEAAKWTRNSVDRMVAHQPNTGETYDVKGTLFSGWRLTTFFNTALNYCYLANAGIN
FT                   SLVPTSLHNGDDVFAGIRTIADGISLIKNAAATGVRANTTKMNIGTIAEFLRVDMRAKN
FT                   STGSQYLTRGIATFTHSRVESDAPLTLRNLVSAYKTRYDEILARGASIDNMKPLYRKQL
FT                   FFARKLFNVEKDIVDNLITMDISCGGLQEKGRVSEMVLQEVDIENIDSYRKTRMIAKLI
FT                   DKGVGDYTAFLKTNFSEIADAITRETRVESVTKAYNVKKKTVVRAFRDLSAAYHERAVR
FT                   HAWKGMSGLHIVNRIRMGVSNLVMVVSKINPAKANVLAKSGDPTKWLAVLT"
XX
SQ   Sequence 4615 BP; 1431 A; 860 C; 1101 G; 1223 T; 0 other;

U01060  Length: 4615  December 21, 2001 15:57  Type: N  Check: 6594  ..

       1  gaatttttcg gtgaaccgga attatgtcgt ctctgttaaa ttcattacta
      51  ccagaatatt ttaaacctaa aactaatttg aatatcaact cttctagggt
     101  ccaatatggc tttaatgctc gcattgatat gcagtatgaa gacgatagtg
     151  ggactagaaa aggctcaaga cccaatgcat ttatgtctaa cacagttgct
     201  tttataggaa actatgaagg tattattgtt gatgacattc cgatattgga
     251  tggtcttagg gccgacattt ttgatactca tggtgactta gacatgggcc
     301  tcgttgagga tgcattgtct aagagtacca tgattagaag gaatgtacca
     351  acttatactg cttacgcgag tgaattactg tataagagaa accttacatc
     401  tctattttac aatatgctcc gtttatacta cattaaaaaa tggggcagta
     451  ttaagtatga aaaagatgcc atcttttatg ataatggcca cgcctgtctt
     501  ttaaacaggc aattgtttcc aaagtctcgt gatgcttctt tggaatcaag
     551  cctctctttg cctgaggctg aaattgcaat gcttgatcct ggcctggaat
     601  ttccagaaga ggatgtgcct gcaattttat ggcacggcag agtgtcatcc
     651  agagcaacgt gtatcttagg gcaagcttgc tcagagttcg cgcctctggc
     701  ccccttttcg attgcgcatt attcaccaca attgacgaga aaactatttg
     751  tcaatgcgcc cgctgggatt gagcctagct ccgggcggta tactcacgag
     801  gatgtaaaag atgcgattac gatccttgtg tctgcaaacc aggcttatac
     851  tgactttgaa gcagcatact tgatgcttgc tcaaacgttg gtctcacctg
     901  taccacgcac tgccgaagca agtgcatggt tcatcaatgc tggcatggtc
     951  aatatgccaa ctttgtcatg tgcaaatggt tattatccag cactgaccaa
    1001  tgtcaatcct taccaccggc tagacacatg gaaagatacg ttaaatcatt
    1051  gggtggctta tcccgacatg ctgttttacc attcagtggc aatgattgag
    1101  agctgctatg ttgaactcgg gaatgtggct cgtgtgtcag acagtgatgc
    1151  aataaacaaa tacactttca ctgagctatc agtgcaagga cggcctgtta
    1201  tgaatcgagg aattattgta gatctgacac ttgtggcaat gcgtactggt
    1251  agggagatct cactacctta cccggtcagc tgtggcctga cccgtacaga
    1301  cgcgttattg caaggtactg agattcacgt tccagttgtt gtcaaagata
    1351  tcgacatgcc ccagtattac aacgcgattg ataaggatgt tattgagggg
    1401  caggaaactg tgattaaagt gaaacagctg ccaccagcta tgtatccaat
    1451  ttatacttac gggatcaaca ctactgaatt ctattctgac cattttgaag
    1501  accaggtaca agttgaaatg gcaccaatcg ataatggaaa agcagttttt
    1551  aacgatgcaa gaaagttttc gaaatttatg tccataatgc gcatgatggg
    1601  gaatgatgtt actgctactg atttagttac aggtagaaaa gtgtcgaatt
    1651  gggccgacaa ctcatcaggg cgtttcttgt acacggatgt gaagtatgaa
    1701  ggacaaactg cctttttggt tgatatggat actgtcaagg cgagagacca
    1751  ctgttgggtg tcaattgttg atcctaatgg tacaatgaac ttgtcatata
    1801  agatgaccaa ttttagagca gcaatgtttt ctagaaacaa gcccttgtat
    1851  atgacagggg ggtcagtcag gaccatagct actggcaatt atcgagatgc
    1901  tgctgaaaga ttacgtgcaa tggatgaaac gctcagatta aaacctttta
    1951  agattactga gaagttggat tttcgtgtag cagcttacgc gataccaagt
    2001  ttgtcgggca gcaatatgcc atccttacac catcaggaac aactacagat
    2051  atcagaagtg gacgcggaac caatcaatcc tataggagag gacgaacttc
    2101  caccggatat agaataggtg tcgaagacga tgaggactta gatattggta
    2151  cggtcaaata cattgtgcca ttgtatttga acggtgataa tgtggcacaa
    2201  aattgtttag aagcaacaca cgtgcttatc aaagcttgta gtattgcgaa
    2251  ccggattgta gatgacggag agggtcactg tttcacacag caagggctgg
    2301  cgcagcagtg gatcttccat aggggggaga tgatatttgt gaaggcggta
    2351  cgcattggtc aactcaatgc atattatgta gactataaga acgtcacaaa
    2401  ttatagtctt aaaaccgctg ctcaagtagg agcgacgata tcaaataact
    2451  tacgccacgg atttgttgac aatcaacaag acgcatacac gcgcttggtt
    2501  gccaactact ctgatacgcg gaagtggata cgtgacaatt ttacatataa
    2551  ttataatatg gagaaagaaa agtataggat aacccaatac caccatacac
    2601  atgtgaggtt gaaagatttg tttccatcca ggaaaatagt taaactagag
    2651  ggatatgaag ccttgttggc aatgatgcta gacaggttta acaacataga
    2701  gtcaacacat gtaactttct tcacatattt aagagcacta cctgaccgtg
    2751  aaaaagaagt ctttattagc ttagtcttaa actataatgg ccttggcaga
    2801  gagtggttga agtctgaagg tgttagggct aaacaagcac aaggtactgt
    2851  gaaatacgat atgagtaaac tatttgaact gaatgtacta gagaacggag
    2901  ttgacgaaga agttgactgg gagaaagaga aacgcaacag gtcagatatc
    2951  aagactgtta acataagtta tgcaaaagtt ctcgaacatt gtagagagct
    3001  attcatcatg gcgagggccg aagggaaacg gccaatgagg atgaaatggc
    3051  aagagtactg gaggcagaga gcagttatca tgccaggtgg atcggtccac
    3101  agtcaacatc cagtcgaaca ggacgtgatt agagtattac ccagagaaat
    3151  cagaagtaag aagggggtgg caagtgtcat gccatacaaa gaacagaagt
    3201  atttcacgtc cagaaggccg gaaatacacg cttacacttc aacgaaatac
    3251  gagtggggaa aagtgagggc actatatggg tgtgattttt catcacatac
    3301  aatggctgat tttggattgt tacaatgcga ggatacattc ccgggctttg
    3351  taccaacagg gtcttacgcc aatgaggatt atgtcaggac cagaattgct
    3401  gggactcact cattgatccc tttctgttac gatttcgatg atttcaacag
    3451  ccaacattca aaggaagcca tgcaagcagt gattgatgca tggatatctg
    3501  tctatcacga taagttaaca gatgaccaga tagaggcggc aaagtggaca
    3551  cgaaactcgg tagatagaat ggtcgctcac caacctaaca ctggtgagac
    3601  ttatgatgtt aaagggacac tgtttagtgg ctggcgatta acaacatttt
    3651  tcaatacggc gttgaactat tgctacctgg ctaatgcagg tataaactca
    3701  ctagtgccaa cgagtctcca taatggtgat gatgtttttg cagggataag
    3751  gacaatagct gacggtattt ctttgatcaa aaacgccgca gccacgggag
    3801  ttcgcgctaa tacaactaaa atgaacattg gtacgatagc agagtttttg
    3851  agagttgata tgcgtgcaaa aaatagtact ggcagtcagt atttaacaag
    3901  agggattgct accttcacgc acagtagggt tgagtctgat gcaccactga
    3951  cattgcgcaa tctagtatct gcttacaaaa ccagatatga cgagatttta
    4001  gctcgtggcg caagcatcga taacatgaag ccactctatc gtaagcaatt
    4051  attttttgct agaaagttgt tcaatgtcga gaaggacatt gttgacaatc
    4101  tgataacgat ggacatatca tgtggcggtt tgcaagaaaa gggtagggta
    4151  tcagagatgg tgttacagga ggttgacatt gagaatatag atagttatag
    4201  gaagacaagg atgatcgcca aactgattga caagggggtt ggcgattata
    4251  ctgcattcct gaaaactaac ttttccgaga tagctgatgc tatcacaaga
    4301  gagacacgtg tagagtcagt gaccaaggct tataatgtta agaagaaaac
    4351  ggtcgtacgc gcgtttaggg acctaagcgc agcatatcat gaaagagcgg
    4401  tgagacatgc ttggaagggg atgagtggac tacacatagt caacaggatt
    4451  cgtatgggag tgagcaactt agtaatggtt gttagcaaaa tcaatcctgc
    4501  aaaagctaat gtgctagcca aatcaggaga tcctacaaaa tggcttgcag
    4551  tccttacatg atatacaggc aaccacataa gacctgagaa caaagagtac
    4601  atacgatact acgca