Sequence of DPV Trichomonas vaginalis virus 1
Trichomonas vaginalis virus 1 strain T1 capsid protein gene, complete cds; and RNA-dependent RNA polymerase (pol) gene, partial cds.
ACC No: U08999
Dated: 2009-09-23 | Length: 4647 | CRC: 71970221
ID U08999; SV 1; linear; genomic RNA; STD; VRL; 4647 BP.
XX
AC U08999;
XX
DT 09-APR-1995 (Rel. 43, Created)
DT 23-SEP-2009 (Rel. 102, Last updated, Version 4)
XX
DE Trichomonas vaginalis virus 1 strain T1 capsid protein gene, complete cds;
DE and RNA-dependent RNA polymerase (pol) gene, partial cds.
XX
KW .
XX
OS Trichomonas vaginalis virus 1
OC Viruses; dsRNA viruses; Totiviridae; Trichomonasvirus.
XX
RN [1]
RP 1-4647
RX DOI; 10.1016/S0042-6822(95)80008-5.
RX PUBMED; 7831841.
RA Tai J.H., Ip C.F.;
RT "The cDNA sequence of Trichomonas vaginalis virus-T1 double-stranded RNA";
RL Virology 206(1):773-776(1995).
XX
RN [2]
RP 1-4647
RA Tai J.-H.;
RT ;
RL Submitted (19-APR-1994) to the EMBL/GenBank/DDBJ databases.
RL Jung-Hsiang Tai, Division of Infectious Diseases, Institute of Biomedical
RL Sciences, Academia Sinica, Rm. 414, Taipei, Taiwan 115, ROC
XX
FH Key Location/Qualifiers
FH
FT source 1. .4647
FT /organism="Trichomonas vaginalis virus 1"
FT /strain="T1"
FT /mol_type="genomic RNA"
FT /db_xref="taxon:674953"
FT 5'UTR 1. .287
FT CDS 288. .2324
FT /codon_start=1
FT /product="capsid protein"
FT /db_xref="UniProtKB/TrEMBL:Q90154"
FT /protein_id="AAA62867.1"
FT /translation="MEASANGLSHDDNANKSQNVGPSTLPRSDKQGGEKHENSFNSFSN
FT DFFFNFLRMSTNTHISDSPGVSFVAKDGTPYSSLTIPSGVGRLTHNVVASAVQLNITAS
FT NTLEVDYGFGQDVSRTTGTIPIPIFDGEKYKETARALAAIFSKKGMSVDVTSQTVQETL
FT KNSDLTIATVAAGYYTALAARHELTKDVSEAAHTIPFVTALSDTFSAALNAQRTSHVIS
FT SCLRCPNSRNAQRDIVIGTVLWNNVFVESLSEHNMAVPNPNDISFFIPNKALSSSWWCA
FT IWLLNAFLHSFIAPTRIHIFITQGETYHLAPFTDSDVYEAVRFLLAMSKSSRPMPESVE
FT SMLYAYGTQMIIQPHSLYTEGGLIRRMIFTVPHLPAHGYFVTNSEFSRYMNIAVPDDPR
FT SAKDFVIGAGTGLLQIVLAYQAAFSCAGPIALHWHANDAISQGMDRVASIYLEGRYFTI
FT PMAVNVATNVAQYTTMVRADPEYRHTLDRILPRIFGPSTDTVFDFIESAITSSWVSIDA
FT RKRNGRARKFRTAFINRFHDPEFAYMFGITGNGIERMEGKVTSNIAQEVDYLMNGGDLR
FT NCPILRTLKAAEREETVTFMCKEKVGSLYAIDGTVRVFKRFETIDLAQLGWTSHGKVMK
FT PYAFRAPVIQGMTICSTAYTSTAIDIITTVFGPLRLRVGSLFE"
FT misc_signal 2301. .2350
FT /function="ribosomal frameshifting"
FT gene <2308. .4578
FT /gene="pol"
FT CDS <2308. .4578
FT /codon_start=1
FT /gene="pol"
FT /product="RNA-dependent RNA polymerase"
FT /db_xref="GOA:Q90155"
FT /db_xref="InterPro:IPR001795"
FT /db_xref="UniProtKB/TrEMBL:Q90155"
FT /protein_id="AAA62868.1"
FT /translation="DPFLSKAVRCGPVIPSVKHHFNINYLSILKHNGNEYTFVPGYGWV
FT LQDDYLLNAVKMVGEGDLPPNQLPYDDDLLFTYAKILLYDYISHFPEFRHKNPRLLTSE
FT TELQLFPLKENSAARTKANFYARTLWNETTSDKSAFKPGTYNDTVAGLLMWQQCALMWS
FT LPKLIINKIISGVCDALTEKVSLTLLKRISDWLKQLGLAYSPIFRLFIELPTLLGRGAI
FT PGDAALDMKHRLTYNPLMTVDVPKTQLHDLIYRLLSRNYNNTKISSFEHHLEERLLWSR
FT SGSHYYPDEQIDQLLPPQPTRKEFLDIVTIDYIKQCKPQVFIRQSRKLEHGKERFIYNC
FT DTISYVYFDFVLKLFESGWQDSEAILSPGDYSSECLHAKISGYKYKAMLDYTDFNSQHT
FT IQSMRLIFETMKELLPPEASFALDWCIASFDNMQTSDGRKWTATLPSGHRATTFINTVL
FT NWCYTQMVGLKFDSFMCAGDDVILMSQEPISLAPILKSQFKFNPSKQSTGTRGEFLRKH
FT YTEAGVFAYPCRAIASLVSGNWLSESLRDNTPILVPIQNGIDRLRSRAGLLGVPWKLGL
FT SELIEREAIPKDVSMALLNSHAAGPGLITRDYSSFTVTPTPPKLHSSLEYTATRHGLQD
FT LCKHVPWKQLTANECNKLGQQIKKMSHRHCSQTKITYKCVYEVFKPSGLPTVLSEVSQS
FT ALSLVWWQAMLKEAMQDYSTKKKDAHMYACNACTSSVSGDAFLRATSKMAGVLITSLIS
FT SSS"
FT 3'UTR 4576. .4647
XX
SQ Sequence 4647 BP; 1348 A; 1156 C; 926 G; 1217 T; 0 other;
u08999 Length: 4647 23-SEP-2009 Type: N Check: 9662 ..
1 actcaacatt gctacttcat catgacgaac ccgtgacgcg gacacgtaac
51 aagcgtagtg tcctcgacga ttgccatcct cgtgtgaatt ccgggctccg
101 cttgcactga tggtacctcc tacgaaactt ggagaggctt cggtctcgaa
151 gagcggtaat gtaccctctg cgcctgggac ctaatcgcgt tttgctgtag
201 gtaattcagt agatggaagg attaagggtc aaacatcttg gttcgccaag
251 tatgtcctta ccagtactct actgagcttg aatacccatg gaggcttctg
301 ctaatgggtt atcacatgat gataatgcga ataaatcgca aaatgttgga
351 ccttctactc ttccgaggtc agataaacaa ggaggagaaa aacacgaaaa
401 ttcttttaat tctttttcta atgatttctt ttttaacttc ttacgtatgt
451 caaccaacac gcacatctca gacagtccag gcgtttcttt cgttgctaaa
501 gatggtacac catacagttc actcacaatt ccttcaggtg tcggtcgtct
551 tactcacaat gtagttgcat ctgccgtcca gctcaatatt acggccagta
601 acacattgga agtagactac ggcttcggcc aagatgtttc aagaaccaca
651 ggcactatcc caatccctat ctttgatggt gaaaaataca aagaaacggc
701 ccgcgcatta gccgctatct tcagcaagaa aggcatgtca gtcgacgtca
751 cctcacagac tgtccaagaa actctcaaga actcagacct caccatcgcc
801 actgtcgcag ctggatatta cacagcctta gctgcgcgtc acgaacttac
851 gaaagacgta agcgaggctg cccacaccat tccattcgtt accgctttat
901 cggatacatt ctcagcagca ctaaatgcac aacgtacaag ccatgtcata
951 tcttcttgct tacgttgtcc aaattccagg aatgctcaac gtgacatcgt
1001 aatcggtacg gttttatgga ataacgtttt tgttgagagc ctctccgaac
1051 acaacatggc ggttcccaat ccaaacgaca tatcattttt cattccgaac
1101 aaagctctct catcttcttg gtggtgcgct atttggctcc tcaatgcatt
1151 tcttcacagc tttatcgcac caactcgtat ccacatcttc attacacaag
1201 gagaaacata ccacctcgct cctttcaccg attcggatgt ctacgaggcc
1251 gttcgtttct tgctcgcaat gtcaaagtca tcacgcccaa tgccagagag
1301 cgtcgagagt atgttatatg catacggcac acagatgatc atccaaccac
1351 attcgctcta cacagaggga ggcttgatca gaagaatgat ctttacagtt
1401 ccacaccttc cagctcatgg ttacttcgtc acgaattccg aattctcgag
1451 atacatgaat atcgctgttc cagacgaccc gcgttctgca aaagacttcg
1501 ttatcggtgc aggaacaggt ctcttacaaa tcgtactggc ttaccaagct
1551 gctttcagct gtgctggacc tattgctctt cactggcatg caaacgatgc
1601 tatctcccaa ggtatggaca gagtcgcaag catctacctt gaaggaagat
1651 acttcaccat cccaatggca gttaacgttg ctactaatgt cgctcaatac
1701 actacaatgg tcagagccga tcctgaatac cgtcacacac ttgaccggat
1751 cttgcctcgc atattcggac catcgactga cacagtcttc gatttcatcg
1801 aatcagcaat tacgtcatct tgggtatcca ttgatgcccg caaacgcaac
1851 ggtcgtgcca gaaagttcag aacagctttc atcaaccgtt tccacgaccc
1901 agaattcgca tacatgttcg gtatcaccgg caacggtatc gagagaatgg
1951 aaggaaaagt tacttccaac atcgcccaag aagtcgatta tctcatgaac
2001 ggcggcgacc ttcgcaattg cccaattctc cgcacactta aggcagcaga
2051 gagagaagaa acagtcactt ttatgtgcaa ggaaaaggtc ggctcactct
2101 acgccatcga cggaacagtt cgcgtattca aacggttcga aacaatcgat
2151 cttgcccagc ttggctggac ttcacatggt aaggtgatga aaccttatgc
2201 atttcgcgct ccagtcattc aaggaatgac catctgcagt acagcgtaca
2251 catcaacggc catcgacatc atcacaacag tctttggtcc cttacgcctc
2301 cgcgtaggat ccctttttga gtaaagctgt acgttgtggc cccgtaatac
2351 catccgtcaa gcatcacttc aatatcaatt accttagtat tctcaaacac
2401 aatggtaacg aatacacttt tgtcccagga tacggatggg tattacagga
2451 tgattatttg ttgaatgccg tcaaaatggt tggagaaggt gatctacccc
2501 ccaatcaatt accttatgac gatgatcttt tatttacata cgcaaaaatt
2551 ttactttacg attacatatc tcattttcca gaattcagac acaagaatcc
2601 acgcttatta acaagtgaaa cagaactaca actcttcccg ctcaaggaaa
2651 actcagctgc caggactaaa gcaaatttct acgctaggac actatggaac
2701 gaaacaactt cggacaagtc agctttcaaa ccaggaactt acaatgacac
2751 agtcgcaggt ctattaatgt ggcaacaatg tgctttgatg tggtctctac
2801 ccaagttaat tatcaacaag attattagcg gtgtttgtga tgcattaacc
2851 gaaaaggtct cactcacgct attaaaacgg atttctgatt ggttaaaaca
2901 actcgggtta gcctactcac ctatattccg tcttttcatt gaactcccta
2951 ctctattagg acgcggagca atcccaggcg atgctgcact agacatgaag
3001 cacagattaa cttacaaccc attgatgaca gtcgatgttc caaagacaca
3051 actacacgac ttaatttaca gacttctatc acgtaactac aacaatacaa
3101 aaattagcag tttcgagcac cacctagaag aacgtttact ttggtcaagg
3151 tctggaagtc actactaccc tgatgaacaa atcgatcagt tacttccccc
3201 acaacctacc agaaaagagt tcttagatat agtaacaata gactacatca
3251 aacaatgcaa acctcaagtt ttcatcagac agtcacgcaa actagagcac
3301 ggcaaggagc gattcattta caattgtgac acgatctcat atgtctattt
3351 tgattttgtc ctgaagctct tcgagtcagg atggcaagat agtgaagcaa
3401 tactgtcacc aggcgattac tcaagtgaat gtctccatgc taaaatctct
3451 ggttataagt acaaagctat gttggactac acagatttca attcgcaaca
3501 cacaatacaa agcatgcgtt tgatcttcga aaccatgaaa gagctactcc
3551 cacctgaagc atcttttgct cttgactggt gtatcgcctc gtttgacaac
3601 atgcaaacgt ctgatggtcg caagtggacc gccactctcc caagtggaca
3651 ccgcgccacg acattcatta acaccgttct aaattggtgt tacacacaga
3701 tggttggttt aaagtttgat agtttcatgt gcgctggtga tgacgtcatc
3751 ctgatgtcgc aagagcctat atcactagcc ccaatcctaa aatcacagtt
3801 caagttcaat cctagcaagc agagtactgg tacaagaggt gaattcttac
3851 gtaaacacta taccgaagca ggtgtcttcg cgtatccatg tcgagcaatc
3901 gcaagcttgg tgagtggaaa ttggttaagc gagtcattga gagacaacac
3951 cccaatttta gtcccgatac agaacggaat cgatagatta cgtagtagag
4001 caggtttact cggagttcct tggaagttag gcctctctga gctcattgag
4051 agagaggcta ttcctaagga cgttagcatg gccctactaa attctcacgc
4101 agcaggaccg ggactaatca ctcgtgacta cagttctttc acagttacac
4151 cgactccgcc caagctacat agttcgttag aatacactgc gacccgacac
4201 ggtctccaag atttatgtaa gcacgtgcca tggaaacaac tcacagcaaa
4251 tgagtgcaat aagttaggac agcaaattaa gaaaatgagc cacaggcatt
4301 gtagccagac aaagataacc tacaaatgtg tctacgaagt ttttaaacct
4351 agtggacttc ctacggtgtt atccgaggtc agccagtcag cgttgtcgct
4401 ggtgtggtgg caagcaatgc ttaaggaagc aatgcaggac tactctacaa
4451 agaagaagga tgcacatatg tacgcttgta acgcatgtac aagctccgtt
4501 agcggagatg cgtttttacg agcgacatca aaaatggctg gtgttttaat
4551 cactagcttg atttcttctt cttcataacg tacagtagaa aagtctctag
4601 agttgctcaa gacttataat gagccagttt ggtctcacta taccttc