Sequence of DPV California encephalitis virus
La Crosse virus RNA-dependent RNA polymerase mRNA, complete cds.
ACC No: U12396
Dated: 2000-03-04 | Length: 6980 | CRC: -1962012975
!!NA_SEQUENCE 1.0
ID LC12396 standard; RNA; VRL; 6980 BP.
XX
AC U12396;
XX
SV U12396.1
XX
DT 04-JAN-1995 (Rel. 42, Created)
DT 04-MAR-2000 (Rel. 63, Last updated, Version 3)
XX
DE La Crosse virus RNA-dependent RNA polymerase mRNA, complete cds.
XX
KW .
XX
OS La Crosse virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Bunyavirus;
OC 7-California encephalitis virus Group.
XX
RN [1]
RP 1-6980
RX MEDLINE; 95133221.
RA Roberts A., Rossier C., Kolakofsky D., Nathanson N., Gonzalez-Scarano F.;
RT "Completion of the La Crosse virus genome sequence and genetic comparisons
RT of the L proteins of the Bunyaviridae";
RL Virology 206(1):742-745(1995).
XX
RN [2]
RP 1-6980
RA Roberts A.;
RT ;
RL Submitted (18-JUL-1994) to the EMBL/GenBank/DDBJ databases.
RL Anjeanette Roberts, Graduate Group in Molecular Biology, University of
RL Pennsylvania, 422 Curie Boulevard, Clinical Research Building,
RL Philadelphia, PA 19104-6146, USA
XX
DR SPTREMBL; Q82998; Q82998.
DR SPTREMBL; Q82999; Q82999.
DR SPTREMBL; Q83000; Q83000.
XX
FH Key Location/Qualifiers
FH
FT source 1. .6980
FT /db_xref="taxon:11577"
FT /organism="La Crosse virus"
FT /strain="La Crosse/original"
FT /map="L segment"
FT CDS 62. .6853
FT /codon_start=1
FT /db_xref="SPTREMBL:Q82998"
FT /note="L protein; large protein; encoded on the viral
FT complementary strand"
FT /product="RNA-dependent RNA polymerase"
FT /protein_id="AAA62607.1"
FT /translation="MDYQEYQQFLARINTARDACVAKDIDVDLLMARHDYFGRELCKSL
FT NIEYRNDVPFIDIILDIRPEVDPLTIDAPHITPDNYLYINNVLYIIDYKVSVSNESSVI
FT TYDKYYELTRDISDRLSIPIEIVIVRIDPVSKDLHINSDRFKELYPTIVVDINFNQFFD
FT LKQLLYEKFGDDEEFLLKVAHGDFTLTAPWCKTGCPEFWKHPIYKEFKMSMPVPERRLF
FT EESVKFNAYESERWNTNLVKIREYTKKDYSEHISKSAKNIFLASGFYKQPNKNEISEGW
FT TLMVGRVQDQREVSKSLHDQKPSIHFIWGAHNPGNSNNATFKLILLSKSLQSIKGISTY
FT TEAFKSLGKMMDIGDKAIEYEEFCMSLKSKARSSWKQIMNKKLEPKQINNALVLWEQQF
FT MVNNDLIDKSEKLKLFKNFCGIGKHKQFKNKMLEDLEVSKPKILDFDDANMYLASLTMM
FT EQSKKILSKSNGLKPDNFILNEFGSKIKDANKETYDNMHKIFETRYWQCISDFSTLMKN
FT ILSVSQYNRHNTFRIAMCANNNVFAIVFPSADIKTKKATVVYSIIVLHKEEENIFNPGC
FT LHGTFKCMNGYISISRAIRLDKERCQRIVSSPGLFLTTCLLFKHDNPTLVMSDIMNFSI
FT YTSLSITKSVLSLTEPARYMIMNSLAISSNVKDYIAEKFSPYTKTLFSVYMTRLIKNAC
FT FDAYDQRQRVQLRDIYLSDYDITQKGIKDNRELTSIWFPGSVTLKEYLTQIYLPFYFNA
FT KGLHEKHHVMVDLAKTILEIECEQRENIKEIWSTNCTKQTVNLKILIHSLCKNLLADTS
FT RHNHLRNRIENRNNFRRSITTISTFTSSKSCLKIGDFRKEKELQSVKQKKILEVQSRKM
FT RLANPMFVTDEQVCLEVGHCNYEMLRNAMPNYTDYISTKVFDRLYELLDKRVLTDKPVI
FT EQIMDMMVDHKKFYFTFFNKGQKTSKDREIFVGEYEAKMCMYAVERIAKERCKLNPDEM
FT ISEPGDGKLKVLEQKSEQEIRFLVETTRQKNREIDEAIEALAAEGYESNLEKIEKLSLG
FT KAKGLKMEINADMSKWSAQDVFYKYFWLIALDPILYPQEKERILYFMCNYMDKELILPD
FT ELLFNLLDQKVAYQNDIIATMTNQLNSNTVLIKRNWLQGNFNYTSSYVHSCAMSVYKEI
FT LKEAITLLDGSILVNSLVHSDDNQTSITIVQDKMENDKIIDFAMKEFERACLTFGCQAN
FT MKKTYVTNCIKEFVSLFNLYGEPFSIYGRFLLTSVGDCAYIGPYEDLASRISSAQTAIK
FT HGCPPSLAWVSIAISHWMTSLTYNMLPGQSNDPIDYFPAENRKDIPIELNGVLDAPLSM
FT ISTVGLESGNLYFLIKLLSKYTPVMQKRESVVNQIAEVKNWKVEDLTDNEIFRLKILRY
FT LVLDAEMDPSDIMGETSDMRGRSILTPRKFTTAGSLRKLYSFSKYQDRLSSPGGMVELF
FT TYLLEKPELLVTKGEDMKDYMESVIFRYNSKRFKESLSIQNPAQLFIEQILFSHKPIID
FT FSGIRDKYINLHDSRALEKEPDILGKVTFTEAYRLLMRDLSSLELTNDDIQVIYSYIIL
FT NDPMMITIANTHILSIYGSPQRRMGMSCSTMPEFRNLKLIHHSPALVLRAYSKNNPDIQ
FT GADPTEMARDLVHLKEFVENTNLEEKMKVRIAINEAEKGQRDIVFELKEMTRFYQVCYE
FT YVKSTEHKIKVFILPTKSYTTTDFCSLMQGNLIKDKEWYTVHYLKQILSGGHKAIMQHN
FT ATSEQNIAFECFKLITHFADSFIDSLSRSAFLQLIIDEFSYKDVKVSKLYDIIKNGYNR
FT TDFIPLLFRTGDLRQADLDKYDAMKSHERVTWNDWQTSRHLDMGSINLTITGYNRSITI
FT IGEDNKLTYAELCLTRKTPENITISGRKLLGARHGLKFENMSKIQTYPGNYYITYRKKD
FT RHQFVYQIHSHESITRRNEEHMAIRTRIYNEITPVCVVNVAEVDGDQRILIRSLDYLNN
FT DIFSLSRIKVGLDEFATIKKAHFSKMVSFEGPPIKTGLLDLTELMRSQDLLNLNYDNIR
FT NSNLISFSKLICCEGSDNINDGLEFLSDDPMNFTEGEAIHSTPIFNIYYSKRGERHMTY
FT RNAIKLLIERETKIFEEAFTFSENGFISPENLGCLEAVVSLIKLLKTNEWSTVIDKCIH
FT ICLIKNGMDHMYHSFDVPKCFMGNPITRDINWMMFREFINSLPGTDIPPWNVMTENFKK
FT KCIALINSKLETQRDFSEFTKLMKKEGGRSNIEFD"
FT CDS complement(1078. .1710)
FT /codon_start=1
FT /db_xref="SPTREMBL:Q82999"
FT /evidence=NOT_EXPERIMENTAL
FT /product="unknown"
FT /protein_id="AAA62608.1"
FT /translation="MSAEGNTIAKTLLLAHIAILNVLCLLYWDTDKIFFIRVEKSDIHC
FT QYLVSNILCILSYVSLLASLILDPNSFSIKLSGFNPLLLDNIFLLCSIMVRLARYIFAS
FT SKSNILGFDTSRSSSILFLNCLCLPIPQKFLNNFNFSLLSIRSLFTINCCSHKTRALFI
FT CLGSNFLFIICFHDDLALLFRDMQNSSYSIALSPISIIFPKDLNASV"
FT CDS complement(4018. .4431)
FT /codon_start=1
FT /db_xref="SPTREMBL:Q83000"
FT /evidence=NOT_EXPERIMENTAL
FT /product="unknown"
FT /protein_id="AAA62609.1"
FT /translation="MPPGEDSLSWYLLKEYNFLKLPAVVNFLGVKMDLPLMSLVSPIIS
FT LGSISASRTKYLSILSLNISLSVRSSTFQFLTSAIWLTTDSLFCMTGVYLLNNFIKKYK
FT FPDSNPTVLIIDNGASNTPFNSIGISFLFSAGK"
XX
SQ Sequence 6980 BP; 2577 A; 1094 C; 1355 G; 1954 T; 0 other;
U12396 Length: 6980 December 21, 2001 15:57 Type: N Check: 3661 ..
1 agtagtgtac tcctatctac aaaacttaca gaaaattcag tcatatcaca
51 atatatgcat aatggactat caagagtatc aacaattctt ggctaggatt
101 aatactgcaa gggatgcatg tgtagccaag gatatcgatg ttgacctatt
151 aatggccaga catgattatt ttggaagaga gctgtgcaag tccttaaata
201 tagaatatag gaatgatgta ccatttatag atataatttt ggatataagg
251 cccgaagtag acccattaac catagatgca ccacatatta ccccagacaa
301 ttatctatat ataaataatg tgttatatat catagattat aaggtctctg
351 tatcgaatga aagcagtgtt ataacatatg acaaatatta tgagttaact
401 agggacatat ccgatagatt aagtattcca atagaaatag ttatcgtccg
451 tatagaccct gtaagtaagg atttgcatat taactctgat agatttaaag
501 aactttaccc tacaatagtg gtggatataa acttcaatca attttttgac
551 ttaaaacaat tactctatga aaaattcggt gatgatgaag aattcctatt
601 gaaagttgca catggtgact tcactcttac agcaccctgg tgcaagactg
651 ggtgccctga attttggaaa caccccattt ataaagagtt taaaatgagt
701 atgccagtac ctgagcggag gctctttgaa gaatctgtca agttcaatgc
751 ttatgaatct gagagatgga atactaactt ggttaaaatc agagaatata
801 caaagaaaga ctattcggag catatttcaa aatctgcaaa aaatattttc
851 ctggctagtg gattttataa gcagccaaat aagaatgaga ttagtgaggg
901 gtggacatta atggttggga gggttcaaga tcagagagaa gtctcaaaat
951 ctctccatga ccagaaacct agcatacatt ttatatgggg agcccataac
1001 ccaggaaata gtaataatgc aaccttcaaa ctcatattgc tttcaaagtc
1051 cttacaaagc ataaaaggta tatcaactta cacagaagcg ttcaaatctt
1101 taggaaaaat gatggatatt ggagataagg ctattgagta tgaagaattc
1151 tgcatgtccc taaaaagcaa agcaagatca tcatggaagc agataatgaa
1201 caaaaaatta gagcctaaac aaataaacaa tgcccttgtt ttatgggaac
1251 agcagtttat ggtaaataat gacctgatag acaaaagtga gaagttgaaa
1301 ttattcaaaa atttctgcgg tataggcaaa cacaagcaat tcaagaataa
1351 aatgctagag gatctagaag tgtcaaagcc caaaatatta gactttgatg
1401 acgcaaatat gtatctagct agcctaacca tgatggaaca gagtaagaag
1451 atattgtcca aaagcaatgg gttgaagcca gataatttta tactgaatga
1501 atttggatcc aaaattaaag atgctaataa agaaacatat gacaatatgc
1551 acaaaatatt tgagacaaga tattggcaat gtatatccga cttctctact
1601 ctgatgaaaa atatcttatc tgtgtcccaa tataacaggc acaacacatt
1651 taggatagct atgtgtgcta ataacaatgt ctttgctata gtatttcctt
1701 cggctgacat aaaaactaag aaagcaactg tagtttatag cattatagtg
1751 ctgcataaag aggaagaaaa catattcaac ccaggatgtt tgcacggcac
1801 atttaagtgt atgaatgggt acatttccat atctagagct ataaggctag
1851 ataaagagag gtgccaaaga attgtttcct cacctggact gtttttaaca
1901 acttgcctac tattcaaaca tgataatcca actctagtga tgagcgatat
1951 tatgaatttt tctatataca ctagcctgtc tatcacaaag agtgttctat
2001 ctttaacaga gccagcacgc tacatgatta tgaactcatt agctatctcc
2051 agcaatgtta aggactatat agcagagaaa ttttcccctt acacaaagac
2101 actgttcagt gtctatatga ctagactaat taaaaatgct tgctttgatg
2151 cttatgacca gagacagcgt gtccaactta gagatatata tttatctgat
2201 tatgacataa cccaaaaagg tattaaagac aatagagagc taacaagtat
2251 atggttccct ggtagtgtaa cattaaagga gtatttaaca caaatatact
2301 taccatttta tttcaatgct aaaggactac atgagaagca ccatgtcatg
2351 gtggatctag caaagactat attagaaata gagtgcgaac agagggaaaa
2401 cataaaggag atatggtcta caaattgtac caaacagaca gtgaacctta
2451 aaattttgat ccattccttg tgcaagaatt tactagcaga cacttcaaga
2501 cacaaccact tgcggaacag aatagaaaat aggaacaatt ttagaaggtc
2551 tataacaact atttcaacat ttacaagttc gaagtcttgc ctcaaaatag
2601 gggactttag aaaagagaaa gagctgcagt cagttaaaca gaagaaaatc
2651 ttagaggtgc agagtcgcaa aatgagatta gcaaacccaa tgttcgtgac
2701 agatgaacaa gtatgccttg aagttgggca ctgcaattat gagatgctga
2751 ggaatgctat gccgaattat acagattata tatcaactaa agtatttgat
2801 aggttatatg agttattaga taaaagagtt ttgacagaca agcctgttat
2851 agagcaaata atggatatga tggtcgacca caaaaagttc tatttcacat
2901 ttttcaataa aggccagaaa acgtcaaagg atagagagat attcgttgga
2951 gaatatgaag ctaaaatgtg tatgtacgca gttgagagaa tagcaaaaga
3001 aagatgtaaa ttaaatcctg atgaaatgat atctgagccg ggtgatggca
3051 agttgaaggt gttggagcaa aaatcagaac aagaaattcg attcttggtc
3101 gagactacaa ggcaaaagaa tcgtgaaatc gatgaggcaa ttgaagcatt
3151 agctgcagaa ggatatgaga gtaatctaga aaaaattgaa aagctttcac
3201 ttggcaaagc aaagggccta aagatggaaa taaatgcaga tatgtctaaa
3251 tggagtgctc aggatgtttt ttataaatat ttctggctca tagccttaga
3301 ccctatcctc tacccacagg aaaaagagag aatattatac tttatgtgca
3351 actacatgga taaagaattg atactgccag atgaattatt attcaatttg
3401 ctggaccaaa aagttgcata ccagaatgat ataatagcta ctatgactaa
3451 tcaattaaat tcaaatacag ttctgataaa gagaaattgg ctccaaggga
3501 atttcaacta cacctcaagt tacgtccata gctgcgcaat gtctgtgtat
3551 aaagaaatat taaaagaggc cataacatta ctagacgggt ctatattagt
3601 caactcatta gtccattcgg atgataacca aacatcgata acaatagttc
3651 aggataagat ggaaaatgat aaaattatag attttgcaat gaaagaattt
3701 gagagagcct gtttgacatt tggatgccaa gcaaatatga aaaagacata
3751 tgtaacaaat tgtataaaag agtttgtttc attatttaac ttgtatggcg
3801 aacccttttc aatatatggc agattcctat taacatctgt gggtgattgt
3851 gcctatatag ggccttatga agatttagct agtcgaatat catcagccca
3901 gacagccata aagcatggtt gtccacccag tctagcatgg gtgtccatag
3951 caataagtca ttggatgacc tctctgacat acaacatgct accagggcag
4001 tcaaatgacc caattgatta tttccctgca gaaaatagga aggatatccc
4051 tatagaattg aatggtgtgt tagatgctcc gttgtcaatg attagtacag
4101 ttggattgga atctgggaat ttatacttct tgataaagtt gttgagcaaa
4151 tacaccccgg tcatgcagaa aagagagtca gtagtcaacc aaatagctga
4201 agttaagaac tggaaggtcg aggatctaac agataatgaa atatttaggc
4251 ttaaaatact cagatattta gttctagatg cagagatgga ccctagtgat
4301 attatgggtg agacaagcga catgagaggg aggtccattt tgacacctag
4351 aaaattcaca acagcaggca gtttaaggaa attatattct ttcagtaagt
4401 accaggatag actgtcttcc cctggaggca tggttgaatt gttcacttat
4451 ttgcttgaga aacctgagtt gttagtgact aaaggagaag atatgaaaga
4501 ttatatggaa tctgtgatat tccgatataa ctccaaaagg ttcaaagaaa
4551 gtttgtcaat acagaaccca gcacaattat ttatagaaca gatattgttc
4601 tcacataagc ccataataga cttttctggt atcagggaca aatatataaa
4651 cctacatgat agtagagctc tagagaagga acctgacata ttaggaaaag
4701 taacatttac agaggcttat agattattaa tgagggacct gtctagccta
4751 gaactaacca atgatgacat ccaagtaatt tattcttaca taatacttaa
4801 tgaccctatg atgataacta ttgcaaacac acatatattg tcaatatacg
4851 ggagtcctca acggaggatg ggcatgtcct gttcaacgat gccagaattt
4901 agaaatttaa aattaataca tcattcccca gccttagttt tgagagcata
4951 tagtaaaaat aatcctgaca tccagggtgc tgatcccacg gaaatggcta
5001 gagatttagt tcatctgaaa gagttcgttg agaatacaaa tttagaagaa
5051 aaaatgaaag ttaggattgc tataaatgaa gcagagaaag gacaacggga
5101 tatagtcttt gaactaaaag agatgactag attttatcag gtttgctatg
5151 agtatgtcaa atctacagaa cacaagataa aagtcttcat tctcccgaca
5201 aaatcataca caacaacaga tttctgttca ctcatgcagg ggaatttaat
5251 aaaagataaa gagtggtaca cagttcacta cctaaaacag atattgtctg
5301 gtggccataa agccataatg cagcataatg ccactagtga gcaaaatatt
5351 gcttttgagt gtttcaaatt aattacccat tttgcagact cattcataga
5401 ttcattatct aggtcagctt ttttgcagtt gataatagat gaattcagtt
5451 ataaagatgt gaaggttagc aaactttatg acataataaa gaatgggtat
5501 aatcgaactg acttcatacc attgcttttt agaactggcg atttaagaca
5551 agctgactta gacaagtatg atgctatgaa aagtcatgag agggttacat
5601 ggaatgattg gcaaacatct cgtcacttgg acatgggttc aattaatcta
5651 acaataaccg gttacaatag atcaataaca ataatcggag aagataacaa
5701 attgacatat gcagaattat gtctaactag gaaaactccc gagaatataa
5751 ctataagtgg cagaaaattg ctaggtgcaa ggcatggact taaatttgaa
5801 aatatgtcca aaatccaaac atacccaggc aattattata taacatatag
5851 aaagaaagat cgccaccagt ttgtatacca gatacattct catgaatcaa
5901 taacaaggag gaatgaagag catatggcta tcaggaccag aatatacaat
5951 gaaataaccc cagtatgtgt agttaacgtt gcagaggtgg atggggacca
6001 acgtatattg ataagatctt tagactatct aaataatgat atattttctc
6051 tttccaggat taaagtcggg cttgacgaat ttgcaacaat aaaaaaagca
6101 cactttagta aaatggtctc atttgaagga cccccaatta agacagggct
6151 cctcgacctt actgaattga tgagatccca agatttgctt aaccttaatt
6201 atgataatat aaggaatagc aacttgatat ctttttcaaa attgatttgc
6251 tgtgaggggt cagataacat aaatgatggg ttagagtttc tgtccgatga
6301 ccctatgaac tttacagagg gtgaagcaat acattcaaca ccgatcttta
6351 atatatatta ctcaaaaaga ggagaaagac atatgacata caggaatgca
6401 attaaattac tgatagagag agaaactaag atttttgaag aagctttcac
6451 attcagtgag aatggcttca tatcaccaga gaaccttggt tgcttagaag
6501 cagtagtatc attaataaaa ttgttgaaaa ctaatgagtg gtccacagtt
6551 atagataaat gtattcatat atgtttaata aagaatggta tggatcacat
6601 gtaccattca tttgatgtcc ctaaatgttt tatggggaat cctatcacta
6651 gagacataaa ttggatgatg tttagagaat tcatcaatag tttaccaggg
6701 acagatatac caccatggaa tgtcatgaca gagaacttca aaaagaaatg
6751 tattgctctg ataaactcta agttagaaac acagagagat ttctcagaat
6801 tcactaaact gatgaaaaag gaaggtggga ggagtaatat agagtttgat
6851 tagtagttat gagtttacag agaacctaca attaggccat aaatttggga
6901 gggttttgga aattggctaa aattcaaaaa gagggggatt aacagcaact
6951 gtataaattt gtagatagga gcacactact