Sequence of DPV Zea mays Hopscotch virus
Zea mays copia-like retrotransposon Hopscotch polyprotein (gag/pol) genes, complete cds.
ACC No: U12626
Dated: 2000-03-04 | Length: 4828 | CRC: 1645662336
!!NA_SEQUENCE 1.0
ID ZM12626 standard; genomic DNA; PLN; 4828 BP.
XX
AC U12626;
XX
SV U12626.1
XX
DT 07-SEP-1994 (Rel. 40, Created)
DT 04-MAR-2000 (Rel. 63, Last updated, Version 4)
XX
DE Zea mays copia-like retrotransposon Hopscotch polyprotein (gag/pol) genes,
DE complete cds.
XX
KW .
XX
OS Zea mays
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; PACCAD clade;
OC Panicoideae; Andropogoneae; Zea.
XX
RN [1]
RP 1-4828
RA White S.E., Habera L., Wessler S.R.;
RT "Hopscotch, a retrotransposon insertion in the wxK mutant allele of maize";
RL Unpublished.
XX
RN [2]
RP 1-4828
RX MEDLINE; 95083588.
RX PUBMED; 7991537.
RA White S.E., Habera L., Wessler S.R.;
RT "Retrotransposons in the flanking regions of normal plant genes: a role for
RT copia-like elements in the evolution of gene structure and expression";
RL Proc. Natl. Acad. Sci. U.S.A. 91(25):11792-11796(1994).
XX
RN [3]
RP 1-4828
RA White S.E.;
RT ;
RL Submitted (25-JUL-1994) to the EMBL/GenBank/DDBJ databases.
RL Shawn E. White, Department of Botany, University of Georgia, Athens, GA
RL 30602, USA
XX
DR MaizeGDB; Variation/17048; wx1-K::Hopscotch.
XX
FH Key Location/Qualifiers
FH
FT source 1. .4828
FT /db_xref="taxon:4577"
FT /mol_type="genomic DNA"
FT /organism="Zea mays"
FT /transposon="retrotransposon Hopscotch"
FT LTR 1. .231
FT CDS 284. .4603
FT /codon_start=1
FT /gene="gag/pol"
FT /product="copia-like retrotransposon Hopscotch polyprotein"
FT /protein_id="AAA57005.1"
FT /translation="MAMQSSLSTSAIPTSFAIPVSEKLTKGNYLLWKAQVLPAIRAAQL
FT DDILTGVEICPPKTISDASDRTVTVANPAYGRWIARDQAVLGYLLSSLSREVLSSVVNC
FT STSASVWTTLSEMYSSHSRARKVNTRIALATTKKGASSVAEYFAKMRGFADELGAAGKP
FT LDDEEFVSFLLTGLDEDFNPLVTAVVARSDPITPGDLYTQLLSYENRMHLQTGSSSLMQ
FT SSANARSPGRGMSWGRSGGRGFSRGRGRGRGPSRGGFQSFGRGNNYSGATDADTSSRPR
FT CQVCSRVGHTALNCWYRFDENYVPDQRSANSAAHQNGSNVPWYTDTGATDHITGDLDRL
FT TMHDKYTGTDQIIAANGTGMTISNIGNAIVPTSSRSLHLRSVLHVPSTHKNLISVHRLT
FT NDNDVFIEFHSSHFLIKDRQTKAVLLHGKCRDGLYPLPPHPDLRLKHNFSSTRVPLEHW
FT HKRLGHPSRDIVHRVISNNNLPCLSNNSTTSVCDACLQAKAHQLPYTISMSQSSAPLML
FT IFSDVFGPAIDSFGRYKYYVSFIDDYSKFTWIYLLRHKSDVYKSFCEFQHLVERMFGRK
FT IIAFQSDWGGEYEKLNAHFKTIGIHHQVSCPHTHQQNGAAERKHRHIVEVGLALLAQSS
FT MPLKYWDHAFLAAVYLINRTPSKTIAHDTPLHKLTGATPDYSSLRIFGCACWPNLRPYN
FT QHKLQFRSTRCVFLGYSNMHKGFKCLDISTGRIYISRDVVFDEHVFPFASLNKNAGVKY
FT TSEVLLLPHDSCGNNMLTDHANNLPGSSSPLPFLAQHFLQGNSEVPTSNNTAMALPASG
FT PNEVSVPPALVPSSLVPAASPAPTGVSANAEPAPEADSLSSGPPVATESVTGVPDADPL
FT LQAPGSSVAHQTPDSAPLSAAAPRTRLQHGISKPKQFTDGTVRYGNAAARITEPSSVSE
FT ALADPQWRAAMEAEFQALQKNNTWTLVPPDRTRNLIDCKWVFKVKYNADGSIDRLKARL
FT VAKGFKQQYGIDYDDTFSPVVKHSTIRLVLSLAVSQKWSLRQLDVQNAFLHGILEETVY
FT MKQPPGFADTTHPNYHCHLQKSLYGLKQRPRAWYSRLSEKLQSLGFVPSKADVSLFIYN
FT AHSTAIYILVYVDDIIITGSSPHAIDNVLAKLKDDFAIKDLGDLHYFLGIEVHRKGDGL
FT LLCQEKYARDLLKRVGMECCKPVHTPVATSEKLSASAGTLLSPEETTKYRSVVGALQYL
FT TLTRPDLSYAINRVCQFLHAPTDLHWTAVKRILRNIQHTIGLGLTIRPSLSLMLSAFSD
FT ADWAGCPDDRKSTGGYALFLGPNLISWNSKKQSTVSRSSTEAEYKAMANATAEVIWLQS
FT LLHELGIRLTGIPRLWCDNLGATYLSSKPIFNARTKHIEVDFHFVRDRVLSKKLDIRLI
FT STNDQVADGFTKALTIGRLNEFRRQSQPRSVVIEGGY"
FT LTR 4418. .4828
XX
SQ Sequence 4828 BP; 1132 A; 1232 C; 1080 G; 1384 T; 0 other;
U12626 Length: 4828 May 9, 2005 17:26 Type: N Check: 4553 ..
1 tattagacag atatattcca gattgtaatc ttgatttctt tccaactaac
51 cggacgtaga tagcacagga tctccttgat ttttggcgct gatatcgctt
101 gtgatacggc agcctctgtt agcctccggt tagagtttgg tacgatgtaa
151 caacctccgc tgctttgtca gcctataaat acatatacgc ggctgctcaa
201 gggcagtaga gaacgcttcc taattccttc atggtataag agccagtgtt
251 tttttttcgt gagagatctc cacagagtct ctcatggcga tgcagtcatc
301 gttgtctacc tccgccatcc ccacctcctt tgccatacct gttagtgaaa
351 agctcacaaa gggcaattat cttctctgga aggcgcaggt cctgccggcc
401 atccgcgccg cccagcttga tgacatcttg actggcgtcg agatctgtcc
451 acccaagacc atatcagatg caagtgacag gactgtcacg gtggccaatc
501 cggcctatgg tcgatggatt gctcgcgatc aagcagtcct tggctatttg
551 ctctcatcgc tttcacgcga ggtgctgagt agcgttgtca attgttccac
601 gtcagcctcg gtatggacaa ctctatccga gatgtattct tcgcactcgc
651 gcgcccgcaa ggtcaatacg cggatcgcgc tggccacaac caagaaaggt
701 gcttcgtcgg tggccgaata ctttgcaaag atgcgtggct ttgctgatga
751 acttggtgct gcgggtaaac cccttgatga cgaggagttc gtgtcttttc
801 tgttgaccgg acttgatgaa gatttcaacc cactagtcac tgctgtggtg
851 gctcgttcag atccaattac tccaggtgat ctgtatacac aactccttag
901 ttacgagaac aggatgcatc tccagactgg ttcatcctcg cttatgcagt
951 cttcggcaaa tgcgcggtct ccgggacgcg gcatgtcttg ggggcgctct
1001 ggtggccgtg gcttctctcg tggccgaggc cgcggcaggg gtccctctcg
1051 aggtggtttt cagtcgttcg ggcgaggcaa caattattct ggcgctacag
1101 atgcagatac ctcctcaagg ccacgatgcc aagtgtgctc aagagttggc
1151 catacggccc taaattgctg gtacaggttc gatgagaatt atgtgccgga
1201 tcagcgctcg gcgaattctg ccgctcatca aaatggctcc aatgttcctt
1251 ggtacacgga caccggagcg acagatcata tcacaggaga tctggatcgt
1301 ttgacgatgc atgacaagta caccggcact gatcagatca ttgctgccaa
1351 tggtacaggt atgactatta gcaatattgg taatgctatt gttcccacat
1401 catcccgttc attgcattta cgttctgttc ttcatgttcc atccacccac
1451 aagaatctca tatcggttca tagacttacc aatgataacg atgtgtttat
1501 tgaattccat tcatctcatt ttcttattaa ggatcggcaa acgaaggccg
1551 tactgctcca tggcaaatgt agagacggcc tctacccact accgccacat
1601 cctgatcttc ggttgaagca caattttagt tctactcgtg tccctttgga
1651 gcattggcac aagcgtcttg gacacccgtc tcgtgatatt gttcatcgtg
1701 tcattagcaa taataatttg ccatgtctta gtaataattc cacaacttca
1751 gtttgtgatg catgtttaca agccaaggca catcagttgc cttatactat
1801 ttccatgagt caatctagtg cacctctcat gcttattttt tcagatgtgt
1851 ttggtccagc aattgattcc tttggtcgct ataaatacta cgtgagtttc
1901 atcgatgatt acagtaaatt cacctggatt taccttcttc gtcacaaatc
1951 cgatgtttac aagtcctttt gtgaatttca gcacttagta gaacggatgt
2001 ttggtcgcaa aatcattgcc tttcagtcag attggggcgg cgagtatgaa
2051 aaactcaatg cccacttcaa aactatcggc atccaccacc aagtgtcgtg
2101 tcctcacacc caccagcaga atggtgcagc cgaacgaaag caccgtcaca
2151 ttgtcgaggt tgggcttgcc ctccttgctc aatcatctat gccgctcaag
2201 tattgggatc atgctttctt ggctgctgtt tatttgataa accgcacacc
2251 atccaaaact attgcccacg acactccctt gcacaagttg acaggtgcca
2301 ctccggatta ctcctcactt cgtattttcg ggtgtgcatg ctggccaaac
2351 ttgcgcccat ataaccagca taagctccaa tttaggtcta cccggtgtgt
2401 tttcttaggg tatagtaaca tgcataaagg attcaagtgc ctggatattt
2451 caaccggccg aatctatatt tcacgcgacg ttgtttttga tgagcatgtt
2501 tttccatttg cctctcttaa taaaaatgct ggggtcaaat acacatctga
2551 agttctcctt ttgccacatg actcttgtgg gaataatatg cttactgatc
2601 atgctaataa tctgcctggt tccagttcac cgctcccctt tcttgcgcag
2651 cattttttgc agggcaattc cgaagttccc acatcaaata atacagccat
2701 ggcgctgccc gcttccggac cgaatgaagt ttccgtgccc cctgcactgg
2751 tcccgtcgtc actagtccct gcagcgtcac ctgcaccaac aggtgtgtcg
2801 gccaatgcgg aaccagcacc tgaggccgac tcactgtcgt ctggtccccc
2851 tgtcgcaaca gaaagtgtga caggtgttcc cgatgcggat ccgctcctgc
2901 aggctcccgg atcgtctgtg gctcaccaga ctcctgattc ggcgccatta
2951 tctgctgctg cgccgcgcac ccgcttgcaa cacggaatta gcaagccgaa
3001 acagttcact gatggaactg tccgatatgg taatgctgca gctcgtatta
3051 ctgaaccatc ttccgtctct gaagcccttg ctgatccaca gtggcgagct
3101 gctatggagg ctgaatttca ggcgctacag aagaataaca cttggacatt
3151 ggtgcccccg gaccgcactc gaaatctcat cgactgtaag tgggttttca
3201 aagttaaata taatgctgac ggctccattg acaggctcaa ggctcgtctg
3251 gttgctaagg gatttaagca acaatatggc attgattacg atgatacgtt
3301 cagccctgtc gtcaagcact ctactattcg tctcgtgctt tccttagcag
3351 tttctcagaa atggagtctt cgtcagctgg acgtgcaaaa tgctttcctg
3401 catggaattc ttgaagaaac tgtttatatg aaacagcctc caggttttgc
3451 tgacacaact catcctaatt atcactgtca tctgcagaaa tcgttgtatg
3501 ggctgaaaca acgtccgcga gcttggtatt cccggttgag tgagaagctt
3551 caaagcttgg gattcgtacc ttctaaagct gatgtttctc tttttattta
3601 caatgcacat tccactgcta tctatatttt ggtgtatgtt gatgacatta
3651 tcattacggg atcctctccg cacgccattg ataatgttct tgccaagctc
3701 aaggatgatt ttgccattaa ggatctaggt gatctccact attttcttgg
3751 tattgaagtt cacagaaagg gtgacggtct ccttctatgt caagaaaaat
3801 atgctcgtga tctcttgaaa cgggtcggca tggaatgttg caaaccagtt
3851 catactcctg ttgccacaag tgaaaagctc tcggcgtctg ctggtacctt
3901 gctttctcct gaagagacta caaaatatcg gagtgttgtt ggtgcattgc
3951 agtatctaac actcactcga cctgatctct cttatgcaat caatagagtt
4001 tgtcagttcc ttcacgcccc gaccgacctt cactggacag cagttaaacg
4051 tattcttcgc aatatacaac atactattgg cctcggtctc actatcagac
4101 catctctgtc cctaatgcta agtgcattct cagatgcgga ctgggccggt
4151 tgccctgatg acaggaagtc tacaggcggg tatgcgctct tccttggtcc
4201 taatttgatc tcctggaact ctaagaaaca aagcacggtg tcacgatcaa
4251 gcacagaagc tgaatataag gccatggcca atgcgactgc cgaagttatc
4301 tggcttcagt cccttctcca cgagcttggt attcggctca ccggtattcc
4351 tcgcctctgg tgcgataatc tgggtgctac atacttgtct tccaagccaa
4401 tttttaatgc tcgcacgaag cacattgaag tcgacttcca ttttgttcgt
4451 gacagagtgc tcagcaagaa gctggatatt cgactgatat ctactaatga
4501 tcaagtggcg gacggtttca caaaagctct cactattgga cggctaaacg
4551 agtttagacg ccaatctcaa cctcgatcgg ttgtgattga ggggggatat
4601 tagacagata tattccagat tgtaatcttg atttctttcc aactaaccgg
4651 acgtagatag cacaggatct ccttgatttt tggcgctgat atcgcttgtg
4701 atacggcagc ctctgttagc ctccggttag agtttggtac gatgtaacaa
4751 cctccgctgc tttgtcagcc tataaataca tatacgcggc tgctcaaggg
4801 cagtagagaa cgcttcctaa ttccttca