Sequence of DPV Zea mays Hopscotch virus

Zea mays copia-like retrotransposon Hopscotch polyprotein (gag/pol) genes, complete cds.

ACC No: U12626

Dated: 2000-03-04 | Length: 4828 | CRC: 1645662336

                !!NA_SEQUENCE 1.0
ID   ZM12626    standard; genomic DNA; PLN; 4828 BP.
XX
AC   U12626;
XX
SV   U12626.1
XX
DT   07-SEP-1994 (Rel. 40, Created)
DT   04-MAR-2000 (Rel. 63, Last updated, Version 4)
XX
DE   Zea mays copia-like retrotransposon Hopscotch polyprotein (gag/pol) genes,
DE   complete cds.
XX
KW   .
XX
OS   Zea mays
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; PACCAD clade;
OC   Panicoideae; Andropogoneae; Zea.
XX
RN   [1]
RP   1-4828
RA   White S.E., Habera L., Wessler S.R.;
RT   "Hopscotch, a retrotransposon insertion in the wxK mutant allele of maize";
RL   Unpublished.
XX
RN   [2]
RP   1-4828
RX   MEDLINE; 95083588.
RX   PUBMED; 7991537.
RA   White S.E., Habera L., Wessler S.R.;
RT   "Retrotransposons in the flanking regions of normal plant genes: a role for
RT   copia-like elements in the evolution of gene structure and expression";
RL   Proc. Natl. Acad. Sci. U.S.A. 91(25):11792-11796(1994).
XX
RN   [3]
RP   1-4828
RA   White S.E.;
RT   ;
RL   Submitted (25-JUL-1994) to the EMBL/GenBank/DDBJ databases.
RL   Shawn E. White, Department of Botany, University of Georgia, Athens, GA
RL   30602, USA
XX
DR   MaizeGDB; Variation/17048; wx1-K::Hopscotch.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .4828
FT                   /db_xref="taxon:4577"
FT                   /mol_type="genomic DNA"
FT                   /organism="Zea mays"
FT                   /transposon="retrotransposon Hopscotch"
FT   LTR             1. .231
FT   CDS             284. .4603
FT                   /codon_start=1
FT                   /gene="gag/pol"
FT                   /product="copia-like retrotransposon Hopscotch polyprotein"
FT                   /protein_id="AAA57005.1"
FT                   /translation="MAMQSSLSTSAIPTSFAIPVSEKLTKGNYLLWKAQVLPAIRAAQL
FT                   DDILTGVEICPPKTISDASDRTVTVANPAYGRWIARDQAVLGYLLSSLSREVLSSVVNC
FT                   STSASVWTTLSEMYSSHSRARKVNTRIALATTKKGASSVAEYFAKMRGFADELGAAGKP
FT                   LDDEEFVSFLLTGLDEDFNPLVTAVVARSDPITPGDLYTQLLSYENRMHLQTGSSSLMQ
FT                   SSANARSPGRGMSWGRSGGRGFSRGRGRGRGPSRGGFQSFGRGNNYSGATDADTSSRPR
FT                   CQVCSRVGHTALNCWYRFDENYVPDQRSANSAAHQNGSNVPWYTDTGATDHITGDLDRL
FT                   TMHDKYTGTDQIIAANGTGMTISNIGNAIVPTSSRSLHLRSVLHVPSTHKNLISVHRLT
FT                   NDNDVFIEFHSSHFLIKDRQTKAVLLHGKCRDGLYPLPPHPDLRLKHNFSSTRVPLEHW
FT                   HKRLGHPSRDIVHRVISNNNLPCLSNNSTTSVCDACLQAKAHQLPYTISMSQSSAPLML
FT                   IFSDVFGPAIDSFGRYKYYVSFIDDYSKFTWIYLLRHKSDVYKSFCEFQHLVERMFGRK
FT                   IIAFQSDWGGEYEKLNAHFKTIGIHHQVSCPHTHQQNGAAERKHRHIVEVGLALLAQSS
FT                   MPLKYWDHAFLAAVYLINRTPSKTIAHDTPLHKLTGATPDYSSLRIFGCACWPNLRPYN
FT                   QHKLQFRSTRCVFLGYSNMHKGFKCLDISTGRIYISRDVVFDEHVFPFASLNKNAGVKY
FT                   TSEVLLLPHDSCGNNMLTDHANNLPGSSSPLPFLAQHFLQGNSEVPTSNNTAMALPASG
FT                   PNEVSVPPALVPSSLVPAASPAPTGVSANAEPAPEADSLSSGPPVATESVTGVPDADPL
FT                   LQAPGSSVAHQTPDSAPLSAAAPRTRLQHGISKPKQFTDGTVRYGNAAARITEPSSVSE
FT                   ALADPQWRAAMEAEFQALQKNNTWTLVPPDRTRNLIDCKWVFKVKYNADGSIDRLKARL
FT                   VAKGFKQQYGIDYDDTFSPVVKHSTIRLVLSLAVSQKWSLRQLDVQNAFLHGILEETVY
FT                   MKQPPGFADTTHPNYHCHLQKSLYGLKQRPRAWYSRLSEKLQSLGFVPSKADVSLFIYN
FT                   AHSTAIYILVYVDDIIITGSSPHAIDNVLAKLKDDFAIKDLGDLHYFLGIEVHRKGDGL
FT                   LLCQEKYARDLLKRVGMECCKPVHTPVATSEKLSASAGTLLSPEETTKYRSVVGALQYL
FT                   TLTRPDLSYAINRVCQFLHAPTDLHWTAVKRILRNIQHTIGLGLTIRPSLSLMLSAFSD
FT                   ADWAGCPDDRKSTGGYALFLGPNLISWNSKKQSTVSRSSTEAEYKAMANATAEVIWLQS
FT                   LLHELGIRLTGIPRLWCDNLGATYLSSKPIFNARTKHIEVDFHFVRDRVLSKKLDIRLI
FT                   STNDQVADGFTKALTIGRLNEFRRQSQPRSVVIEGGY"
FT   LTR             4418. .4828
XX
SQ   Sequence 4828 BP; 1132 A; 1232 C; 1080 G; 1384 T; 0 other;

   U12626  Length: 4828  May 9, 2005 17:26  Type: N  Check: 4553  ..

       1  tattagacag atatattcca gattgtaatc ttgatttctt tccaactaac
      51  cggacgtaga tagcacagga tctccttgat ttttggcgct gatatcgctt
     101  gtgatacggc agcctctgtt agcctccggt tagagtttgg tacgatgtaa
     151  caacctccgc tgctttgtca gcctataaat acatatacgc ggctgctcaa
     201  gggcagtaga gaacgcttcc taattccttc atggtataag agccagtgtt
     251  tttttttcgt gagagatctc cacagagtct ctcatggcga tgcagtcatc
     301  gttgtctacc tccgccatcc ccacctcctt tgccatacct gttagtgaaa
     351  agctcacaaa gggcaattat cttctctgga aggcgcaggt cctgccggcc
     401  atccgcgccg cccagcttga tgacatcttg actggcgtcg agatctgtcc
     451  acccaagacc atatcagatg caagtgacag gactgtcacg gtggccaatc
     501  cggcctatgg tcgatggatt gctcgcgatc aagcagtcct tggctatttg
     551  ctctcatcgc tttcacgcga ggtgctgagt agcgttgtca attgttccac
     601  gtcagcctcg gtatggacaa ctctatccga gatgtattct tcgcactcgc
     651  gcgcccgcaa ggtcaatacg cggatcgcgc tggccacaac caagaaaggt
     701  gcttcgtcgg tggccgaata ctttgcaaag atgcgtggct ttgctgatga
     751  acttggtgct gcgggtaaac cccttgatga cgaggagttc gtgtcttttc
     801  tgttgaccgg acttgatgaa gatttcaacc cactagtcac tgctgtggtg
     851  gctcgttcag atccaattac tccaggtgat ctgtatacac aactccttag
     901  ttacgagaac aggatgcatc tccagactgg ttcatcctcg cttatgcagt
     951  cttcggcaaa tgcgcggtct ccgggacgcg gcatgtcttg ggggcgctct
    1001  ggtggccgtg gcttctctcg tggccgaggc cgcggcaggg gtccctctcg
    1051  aggtggtttt cagtcgttcg ggcgaggcaa caattattct ggcgctacag
    1101  atgcagatac ctcctcaagg ccacgatgcc aagtgtgctc aagagttggc
    1151  catacggccc taaattgctg gtacaggttc gatgagaatt atgtgccgga
    1201  tcagcgctcg gcgaattctg ccgctcatca aaatggctcc aatgttcctt
    1251  ggtacacgga caccggagcg acagatcata tcacaggaga tctggatcgt
    1301  ttgacgatgc atgacaagta caccggcact gatcagatca ttgctgccaa
    1351  tggtacaggt atgactatta gcaatattgg taatgctatt gttcccacat
    1401  catcccgttc attgcattta cgttctgttc ttcatgttcc atccacccac
    1451  aagaatctca tatcggttca tagacttacc aatgataacg atgtgtttat
    1501  tgaattccat tcatctcatt ttcttattaa ggatcggcaa acgaaggccg
    1551  tactgctcca tggcaaatgt agagacggcc tctacccact accgccacat
    1601  cctgatcttc ggttgaagca caattttagt tctactcgtg tccctttgga
    1651  gcattggcac aagcgtcttg gacacccgtc tcgtgatatt gttcatcgtg
    1701  tcattagcaa taataatttg ccatgtctta gtaataattc cacaacttca
    1751  gtttgtgatg catgtttaca agccaaggca catcagttgc cttatactat
    1801  ttccatgagt caatctagtg cacctctcat gcttattttt tcagatgtgt
    1851  ttggtccagc aattgattcc tttggtcgct ataaatacta cgtgagtttc
    1901  atcgatgatt acagtaaatt cacctggatt taccttcttc gtcacaaatc
    1951  cgatgtttac aagtcctttt gtgaatttca gcacttagta gaacggatgt
    2001  ttggtcgcaa aatcattgcc tttcagtcag attggggcgg cgagtatgaa
    2051  aaactcaatg cccacttcaa aactatcggc atccaccacc aagtgtcgtg
    2101  tcctcacacc caccagcaga atggtgcagc cgaacgaaag caccgtcaca
    2151  ttgtcgaggt tgggcttgcc ctccttgctc aatcatctat gccgctcaag
    2201  tattgggatc atgctttctt ggctgctgtt tatttgataa accgcacacc
    2251  atccaaaact attgcccacg acactccctt gcacaagttg acaggtgcca
    2301  ctccggatta ctcctcactt cgtattttcg ggtgtgcatg ctggccaaac
    2351  ttgcgcccat ataaccagca taagctccaa tttaggtcta cccggtgtgt
    2401  tttcttaggg tatagtaaca tgcataaagg attcaagtgc ctggatattt
    2451  caaccggccg aatctatatt tcacgcgacg ttgtttttga tgagcatgtt
    2501  tttccatttg cctctcttaa taaaaatgct ggggtcaaat acacatctga
    2551  agttctcctt ttgccacatg actcttgtgg gaataatatg cttactgatc
    2601  atgctaataa tctgcctggt tccagttcac cgctcccctt tcttgcgcag
    2651  cattttttgc agggcaattc cgaagttccc acatcaaata atacagccat
    2701  ggcgctgccc gcttccggac cgaatgaagt ttccgtgccc cctgcactgg
    2751  tcccgtcgtc actagtccct gcagcgtcac ctgcaccaac aggtgtgtcg
    2801  gccaatgcgg aaccagcacc tgaggccgac tcactgtcgt ctggtccccc
    2851  tgtcgcaaca gaaagtgtga caggtgttcc cgatgcggat ccgctcctgc
    2901  aggctcccgg atcgtctgtg gctcaccaga ctcctgattc ggcgccatta
    2951  tctgctgctg cgccgcgcac ccgcttgcaa cacggaatta gcaagccgaa
    3001  acagttcact gatggaactg tccgatatgg taatgctgca gctcgtatta
    3051  ctgaaccatc ttccgtctct gaagcccttg ctgatccaca gtggcgagct
    3101  gctatggagg ctgaatttca ggcgctacag aagaataaca cttggacatt
    3151  ggtgcccccg gaccgcactc gaaatctcat cgactgtaag tgggttttca
    3201  aagttaaata taatgctgac ggctccattg acaggctcaa ggctcgtctg
    3251  gttgctaagg gatttaagca acaatatggc attgattacg atgatacgtt
    3301  cagccctgtc gtcaagcact ctactattcg tctcgtgctt tccttagcag
    3351  tttctcagaa atggagtctt cgtcagctgg acgtgcaaaa tgctttcctg
    3401  catggaattc ttgaagaaac tgtttatatg aaacagcctc caggttttgc
    3451  tgacacaact catcctaatt atcactgtca tctgcagaaa tcgttgtatg
    3501  ggctgaaaca acgtccgcga gcttggtatt cccggttgag tgagaagctt
    3551  caaagcttgg gattcgtacc ttctaaagct gatgtttctc tttttattta
    3601  caatgcacat tccactgcta tctatatttt ggtgtatgtt gatgacatta
    3651  tcattacggg atcctctccg cacgccattg ataatgttct tgccaagctc
    3701  aaggatgatt ttgccattaa ggatctaggt gatctccact attttcttgg
    3751  tattgaagtt cacagaaagg gtgacggtct ccttctatgt caagaaaaat
    3801  atgctcgtga tctcttgaaa cgggtcggca tggaatgttg caaaccagtt
    3851  catactcctg ttgccacaag tgaaaagctc tcggcgtctg ctggtacctt
    3901  gctttctcct gaagagacta caaaatatcg gagtgttgtt ggtgcattgc
    3951  agtatctaac actcactcga cctgatctct cttatgcaat caatagagtt
    4001  tgtcagttcc ttcacgcccc gaccgacctt cactggacag cagttaaacg
    4051  tattcttcgc aatatacaac atactattgg cctcggtctc actatcagac
    4101  catctctgtc cctaatgcta agtgcattct cagatgcgga ctgggccggt
    4151  tgccctgatg acaggaagtc tacaggcggg tatgcgctct tccttggtcc
    4201  taatttgatc tcctggaact ctaagaaaca aagcacggtg tcacgatcaa
    4251  gcacagaagc tgaatataag gccatggcca atgcgactgc cgaagttatc
    4301  tggcttcagt cccttctcca cgagcttggt attcggctca ccggtattcc
    4351  tcgcctctgg tgcgataatc tgggtgctac atacttgtct tccaagccaa
    4401  tttttaatgc tcgcacgaag cacattgaag tcgacttcca ttttgttcgt
    4451  gacagagtgc tcagcaagaa gctggatatt cgactgatat ctactaatga
    4501  tcaagtggcg gacggtttca caaaagctct cactattgga cggctaaacg
    4551  agtttagacg ccaatctcaa cctcgatcgg ttgtgattga ggggggatat
    4601  tagacagata tattccagat tgtaatcttg atttctttcc aactaaccgg
    4651  acgtagatag cacaggatct ccttgatttt tggcgctgat atcgcttgtg
    4701  atacggcagc ctctgttagc ctccggttag agtttggtac gatgtaacaa
    4751  cctccgctgc tttgtcagcc tataaataca tatacgcggc tgctcaaggg
    4801  cagtagagaa cgcttcctaa ttccttca