Sequence of DPV Zea mays Hopscotch virus
Zea mays copia-like retrotransposon Hopscotch polyprotein (gag/pol) genes, complete cds.
ACC No: U12626
Dated: 2000-03-04 | Length: 4828 | CRC: 1645662336
!!NA_SEQUENCE 1.0 ID ZM12626 standard; genomic DNA; PLN; 4828 BP. XX AC U12626; XX SV U12626.1 XX DT 07-SEP-1994 (Rel. 40, Created) DT 04-MAR-2000 (Rel. 63, Last updated, Version 4) XX DE Zea mays copia-like retrotransposon Hopscotch polyprotein (gag/pol) genes, DE complete cds. XX KW . XX OS Zea mays OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; PACCAD clade; OC Panicoideae; Andropogoneae; Zea. XX RN [1] RP 1-4828 RA White S.E., Habera L., Wessler S.R.; RT "Hopscotch, a retrotransposon insertion in the wxK mutant allele of maize"; RL Unpublished. XX RN [2] RP 1-4828 RX MEDLINE; 95083588. RX PUBMED; 7991537. RA White S.E., Habera L., Wessler S.R.; RT "Retrotransposons in the flanking regions of normal plant genes: a role for RT copia-like elements in the evolution of gene structure and expression"; RL Proc. Natl. Acad. Sci. U.S.A. 91(25):11792-11796(1994). XX RN [3] RP 1-4828 RA White S.E.; RT ; RL Submitted (25-JUL-1994) to the EMBL/GenBank/DDBJ databases. RL Shawn E. White, Department of Botany, University of Georgia, Athens, GA RL 30602, USA XX DR MaizeGDB; Variation/17048; wx1-K::Hopscotch. XX FH Key Location/Qualifiers FH FT source 1. .4828 FT /db_xref="taxon:4577" FT /mol_type="genomic DNA" FT /organism="Zea mays" FT /transposon="retrotransposon Hopscotch" FT LTR 1. .231 FT CDS 284. .4603 FT /codon_start=1 FT /gene="gag/pol" FT /product="copia-like retrotransposon Hopscotch polyprotein" FT /protein_id="AAA57005.1" FT /translation="MAMQSSLSTSAIPTSFAIPVSEKLTKGNYLLWKAQVLPAIRAAQL FT DDILTGVEICPPKTISDASDRTVTVANPAYGRWIARDQAVLGYLLSSLSREVLSSVVNC FT STSASVWTTLSEMYSSHSRARKVNTRIALATTKKGASSVAEYFAKMRGFADELGAAGKP FT LDDEEFVSFLLTGLDEDFNPLVTAVVARSDPITPGDLYTQLLSYENRMHLQTGSSSLMQ FT SSANARSPGRGMSWGRSGGRGFSRGRGRGRGPSRGGFQSFGRGNNYSGATDADTSSRPR FT CQVCSRVGHTALNCWYRFDENYVPDQRSANSAAHQNGSNVPWYTDTGATDHITGDLDRL FT TMHDKYTGTDQIIAANGTGMTISNIGNAIVPTSSRSLHLRSVLHVPSTHKNLISVHRLT FT NDNDVFIEFHSSHFLIKDRQTKAVLLHGKCRDGLYPLPPHPDLRLKHNFSSTRVPLEHW FT HKRLGHPSRDIVHRVISNNNLPCLSNNSTTSVCDACLQAKAHQLPYTISMSQSSAPLML FT IFSDVFGPAIDSFGRYKYYVSFIDDYSKFTWIYLLRHKSDVYKSFCEFQHLVERMFGRK FT IIAFQSDWGGEYEKLNAHFKTIGIHHQVSCPHTHQQNGAAERKHRHIVEVGLALLAQSS FT MPLKYWDHAFLAAVYLINRTPSKTIAHDTPLHKLTGATPDYSSLRIFGCACWPNLRPYN FT QHKLQFRSTRCVFLGYSNMHKGFKCLDISTGRIYISRDVVFDEHVFPFASLNKNAGVKY FT TSEVLLLPHDSCGNNMLTDHANNLPGSSSPLPFLAQHFLQGNSEVPTSNNTAMALPASG FT PNEVSVPPALVPSSLVPAASPAPTGVSANAEPAPEADSLSSGPPVATESVTGVPDADPL FT LQAPGSSVAHQTPDSAPLSAAAPRTRLQHGISKPKQFTDGTVRYGNAAARITEPSSVSE FT ALADPQWRAAMEAEFQALQKNNTWTLVPPDRTRNLIDCKWVFKVKYNADGSIDRLKARL FT VAKGFKQQYGIDYDDTFSPVVKHSTIRLVLSLAVSQKWSLRQLDVQNAFLHGILEETVY FT MKQPPGFADTTHPNYHCHLQKSLYGLKQRPRAWYSRLSEKLQSLGFVPSKADVSLFIYN FT AHSTAIYILVYVDDIIITGSSPHAIDNVLAKLKDDFAIKDLGDLHYFLGIEVHRKGDGL FT LLCQEKYARDLLKRVGMECCKPVHTPVATSEKLSASAGTLLSPEETTKYRSVVGALQYL FT TLTRPDLSYAINRVCQFLHAPTDLHWTAVKRILRNIQHTIGLGLTIRPSLSLMLSAFSD FT ADWAGCPDDRKSTGGYALFLGPNLISWNSKKQSTVSRSSTEAEYKAMANATAEVIWLQS FT LLHELGIRLTGIPRLWCDNLGATYLSSKPIFNARTKHIEVDFHFVRDRVLSKKLDIRLI FT STNDQVADGFTKALTIGRLNEFRRQSQPRSVVIEGGY" FT LTR 4418. .4828 XX SQ Sequence 4828 BP; 1132 A; 1232 C; 1080 G; 1384 T; 0 other; U12626 Length: 4828 May 9, 2005 17:26 Type: N Check: 4553 .. 1 tattagacag atatattcca gattgtaatc ttgatttctt tccaactaac 51 cggacgtaga tagcacagga tctccttgat ttttggcgct gatatcgctt 101 gtgatacggc agcctctgtt agcctccggt tagagtttgg tacgatgtaa 151 caacctccgc tgctttgtca gcctataaat acatatacgc ggctgctcaa 201 gggcagtaga gaacgcttcc taattccttc atggtataag agccagtgtt 251 tttttttcgt gagagatctc cacagagtct ctcatggcga tgcagtcatc 301 gttgtctacc tccgccatcc ccacctcctt tgccatacct gttagtgaaa 351 agctcacaaa gggcaattat cttctctgga aggcgcaggt cctgccggcc 401 atccgcgccg cccagcttga tgacatcttg actggcgtcg agatctgtcc 451 acccaagacc atatcagatg caagtgacag gactgtcacg gtggccaatc 501 cggcctatgg tcgatggatt gctcgcgatc aagcagtcct tggctatttg 551 ctctcatcgc tttcacgcga ggtgctgagt agcgttgtca attgttccac 601 gtcagcctcg gtatggacaa ctctatccga gatgtattct tcgcactcgc 651 gcgcccgcaa ggtcaatacg cggatcgcgc tggccacaac caagaaaggt 701 gcttcgtcgg tggccgaata ctttgcaaag atgcgtggct ttgctgatga 751 acttggtgct gcgggtaaac cccttgatga cgaggagttc gtgtcttttc 801 tgttgaccgg acttgatgaa gatttcaacc cactagtcac tgctgtggtg 851 gctcgttcag atccaattac tccaggtgat ctgtatacac aactccttag 901 ttacgagaac aggatgcatc tccagactgg ttcatcctcg cttatgcagt 951 cttcggcaaa tgcgcggtct ccgggacgcg gcatgtcttg ggggcgctct 1001 ggtggccgtg gcttctctcg tggccgaggc cgcggcaggg gtccctctcg 1051 aggtggtttt cagtcgttcg ggcgaggcaa caattattct ggcgctacag 1101 atgcagatac ctcctcaagg ccacgatgcc aagtgtgctc aagagttggc 1151 catacggccc taaattgctg gtacaggttc gatgagaatt atgtgccgga 1201 tcagcgctcg gcgaattctg ccgctcatca aaatggctcc aatgttcctt 1251 ggtacacgga caccggagcg acagatcata tcacaggaga tctggatcgt 1301 ttgacgatgc atgacaagta caccggcact gatcagatca ttgctgccaa 1351 tggtacaggt atgactatta gcaatattgg taatgctatt gttcccacat 1401 catcccgttc attgcattta cgttctgttc ttcatgttcc atccacccac 1451 aagaatctca tatcggttca tagacttacc aatgataacg atgtgtttat 1501 tgaattccat tcatctcatt ttcttattaa ggatcggcaa acgaaggccg 1551 tactgctcca tggcaaatgt agagacggcc tctacccact accgccacat 1601 cctgatcttc ggttgaagca caattttagt tctactcgtg tccctttgga 1651 gcattggcac aagcgtcttg gacacccgtc tcgtgatatt gttcatcgtg 1701 tcattagcaa taataatttg ccatgtctta gtaataattc cacaacttca 1751 gtttgtgatg catgtttaca agccaaggca catcagttgc cttatactat 1801 ttccatgagt caatctagtg cacctctcat gcttattttt tcagatgtgt 1851 ttggtccagc aattgattcc tttggtcgct ataaatacta cgtgagtttc 1901 atcgatgatt acagtaaatt cacctggatt taccttcttc gtcacaaatc 1951 cgatgtttac aagtcctttt gtgaatttca gcacttagta gaacggatgt 2001 ttggtcgcaa aatcattgcc tttcagtcag attggggcgg cgagtatgaa 2051 aaactcaatg cccacttcaa aactatcggc atccaccacc aagtgtcgtg 2101 tcctcacacc caccagcaga atggtgcagc cgaacgaaag caccgtcaca 2151 ttgtcgaggt tgggcttgcc ctccttgctc aatcatctat gccgctcaag 2201 tattgggatc atgctttctt ggctgctgtt tatttgataa accgcacacc 2251 atccaaaact attgcccacg acactccctt gcacaagttg acaggtgcca 2301 ctccggatta ctcctcactt cgtattttcg ggtgtgcatg ctggccaaac 2351 ttgcgcccat ataaccagca taagctccaa tttaggtcta cccggtgtgt 2401 tttcttaggg tatagtaaca tgcataaagg attcaagtgc ctggatattt 2451 caaccggccg aatctatatt tcacgcgacg ttgtttttga tgagcatgtt 2501 tttccatttg cctctcttaa taaaaatgct ggggtcaaat acacatctga 2551 agttctcctt ttgccacatg actcttgtgg gaataatatg cttactgatc 2601 atgctaataa tctgcctggt tccagttcac cgctcccctt tcttgcgcag 2651 cattttttgc agggcaattc cgaagttccc acatcaaata atacagccat 2701 ggcgctgccc gcttccggac cgaatgaagt ttccgtgccc cctgcactgg 2751 tcccgtcgtc actagtccct gcagcgtcac ctgcaccaac aggtgtgtcg 2801 gccaatgcgg aaccagcacc tgaggccgac tcactgtcgt ctggtccccc 2851 tgtcgcaaca gaaagtgtga caggtgttcc cgatgcggat ccgctcctgc 2901 aggctcccgg atcgtctgtg gctcaccaga ctcctgattc ggcgccatta 2951 tctgctgctg cgccgcgcac ccgcttgcaa cacggaatta gcaagccgaa 3001 acagttcact gatggaactg tccgatatgg taatgctgca gctcgtatta 3051 ctgaaccatc ttccgtctct gaagcccttg ctgatccaca gtggcgagct 3101 gctatggagg ctgaatttca ggcgctacag aagaataaca cttggacatt 3151 ggtgcccccg gaccgcactc gaaatctcat cgactgtaag tgggttttca 3201 aagttaaata taatgctgac ggctccattg acaggctcaa ggctcgtctg 3251 gttgctaagg gatttaagca acaatatggc attgattacg atgatacgtt 3301 cagccctgtc gtcaagcact ctactattcg tctcgtgctt tccttagcag 3351 tttctcagaa atggagtctt cgtcagctgg acgtgcaaaa tgctttcctg 3401 catggaattc ttgaagaaac tgtttatatg aaacagcctc caggttttgc 3451 tgacacaact catcctaatt atcactgtca tctgcagaaa tcgttgtatg 3501 ggctgaaaca acgtccgcga gcttggtatt cccggttgag tgagaagctt 3551 caaagcttgg gattcgtacc ttctaaagct gatgtttctc tttttattta 3601 caatgcacat tccactgcta tctatatttt ggtgtatgtt gatgacatta 3651 tcattacggg atcctctccg cacgccattg ataatgttct tgccaagctc 3701 aaggatgatt ttgccattaa ggatctaggt gatctccact attttcttgg 3751 tattgaagtt cacagaaagg gtgacggtct ccttctatgt caagaaaaat 3801 atgctcgtga tctcttgaaa cgggtcggca tggaatgttg caaaccagtt 3851 catactcctg ttgccacaag tgaaaagctc tcggcgtctg ctggtacctt 3901 gctttctcct gaagagacta caaaatatcg gagtgttgtt ggtgcattgc 3951 agtatctaac actcactcga cctgatctct cttatgcaat caatagagtt 4001 tgtcagttcc ttcacgcccc gaccgacctt cactggacag cagttaaacg 4051 tattcttcgc aatatacaac atactattgg cctcggtctc actatcagac 4101 catctctgtc cctaatgcta agtgcattct cagatgcgga ctgggccggt 4151 tgccctgatg acaggaagtc tacaggcggg tatgcgctct tccttggtcc 4201 taatttgatc tcctggaact ctaagaaaca aagcacggtg tcacgatcaa 4251 gcacagaagc tgaatataag gccatggcca atgcgactgc cgaagttatc 4301 tggcttcagt cccttctcca cgagcttggt attcggctca ccggtattcc 4351 tcgcctctgg tgcgataatc tgggtgctac atacttgtct tccaagccaa 4401 tttttaatgc tcgcacgaag cacattgaag tcgacttcca ttttgttcgt 4451 gacagagtgc tcagcaagaa gctggatatt cgactgatat ctactaatga 4501 tcaagtggcg gacggtttca caaaagctct cactattgga cggctaaacg 4551 agtttagacg ccaatctcaa cctcgatcgg ttgtgattga ggggggatat 4601 tagacagata tattccagat tgtaatcttg atttctttcc aactaaccgg 4651 acgtagatag cacaggatct ccttgatttt tggcgctgat atcgcttgtg 4701 atacggcagc ctctgttagc ctccggttag agtttggtac gatgtaacaa 4751 cctccgctgc tttgtcagcc tataaataca tatacgcggc tgctcaaggg 4801 cagtagagaa cgcttcctaa ttccttca