Sequence of DPV Leishmania RNA virus 2-1

Leishmania RNA virus 2-1, complete genome.

ACC No: U32108

Dated: 2000-03-04 | Length: 5241 | CRC: 653893080

                !!NA_SEQUENCE 1.0
ID   LR32108    standard; RNA; VRL; 5241 BP.
XX
AC   U32108;
XX
SV   U32108.1
XX
DT   03-NOV-1995 (Rel. 45, Created)
DT   04-MAR-2000 (Rel. 63, Last updated, Version 3)
XX
DE   Leishmania RNA virus 2-1, complete genome.
XX
KW   .
XX
OS   Leishmania RNA virus 2-1
OC   Viruses; dsRNA viruses; Totiviridae; Leishmaniavirus.
XX
RN   [1]
RP   1-5241
RX   MEDLINE; 95407119.
RA   Scheffter S.M., Ro Y.T., Chung I.K., Patterson J.L.;
RT   "The complete sequence of Leishmania RNA virus LRV2-1, a virus of an Old
RT   World parasite strain";
RL   Virology 212(1):84-90(1995).
XX
RN   [2]
RP   1-5241
RA   Scheffter S.M.;
RT   ;
RL   Submitted (21-JUL-1995) to the EMBL/GenBank/DDBJ databases.
RL   Scott M. Scheffter, Microbiology and Molecular Genetics, Harvard Medical
RL   School, 300 Longwood Avenue, Boston, MA 02115, USA
XX
DR   SPTREMBL; Q83071; Q83071.
DR   SPTREMBL; Q83072; Q83072.
DR   SPTREMBL; Q83073; Q83073.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .5241
FT                   /db_xref="taxon:39116"
FT                   /organism="Leishmania RNA virus 2-1"
FT                   /specific_host="Leishmania major"
FT                   /lab_host="Leishmania major"
FT   CDS             197. .316
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:Q83071"
FT                   /evidence=NOT_EXPERIMENTAL
FT                   /function="possible role in regulating internal translation
FT                   initiation"
FT                   /product="unknown"
FT                   /protein_id="AAB50029.1"
FT                   /translation="MVCRSVRPAILILTPVDAGKNRVMGWHPAPYVFQSLVYY"
FT   CDS             341. .2485
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:Q83072"
FT                   /evidence=EXPERIMENTAL
FT                   /product="major capsid protein"
FT                   /protein_id="AAB50030.1"
FT                   /translation="MTSPIPQMNTSVFNLTRGRRVVSGDTSERVYTAVLNYCSTVRQSY
FT                   QATTNVHWRLKQRGKKASHVSRAHAGISASFDYADNLKQEILKYHSRHVCTEIVVGRDY
FT                   RFDFRSLLHHAGACMAHYCLTGVLDLNVLSSGKSGGTRVTVLSNADGLSILATDVLYLP
FT                   NALKMMDINIFNCIYLLAAACECNIVFDDVILTGGTSAYNVPALNSVTVEYAPTLHNYI
FT                   SVAFTSNGDGGCDGALALTAGLHTVVTVVAHSDEGGQMRDVLRALHYAPAKGIVVADPN
FT                   RTVNHSLPLLMYEPTWDSVCGMWDYVAVATAGLVHLCDPCELIAHDVYPTIITAPDENN
FT                   VRAIEARVEAALPAFASIYIHNLAMFMGVGGDDCGRAVDTLVEAGVYIYSLTGNDASRH
FT                   MLKGTMAPWFWVESTGLFRDLTCFNIPGLSAGYGPQAIYGTAITQPAMQACEYTGTRGS
FT                   YDYYNVGWTSLRKHPLLVLTNNRAGDGIAHMEVGRDAAIPWVLLGQPQRRECTAQGHGT
FT                   QTATCGHTKHNRGTLDEYIWGRFSTGLFHPAELTTFTNVEFRVKCWTEDNDGNVLETGA
FT                   PVKDIVEGGVTVSVNAILLTNSTNHIRTVPAVRRSYQAGAKYLEEARSRGTMSTLNRII
FT                   GGQLFRDLQPISKRGVPPQPEPVCASMPVETTKEVSLSRIGPIRINQNVFRPRPQPTEE
FT                   EMHEEPTPVALEAEPPGENV"
FT   CDS             2858. .5191
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:Q83073"
FT                   /note="putative RNA-dependent RNA polymerase; RDRP"
FT                   /function="transcriptase, replicase"
FT                   /product="RNA-dependent RNA polymerase"
FT                   /protein_id="AAB50031.1"
FT                   /translation="MRAKLTKVVEGDLSVFMPNARIKRESQNASDLHHFLESVVEGIAI
FT                   PQPDSLILSLEGVLGHKYKLKQHIGASTKVNIHASEVIAGSRKYARTVYRQYVQMSSLF
FT                   SGMYDDHVAGILLYSISTLKHCDVHVAMAYAIAAVRDLTQSVIADLSDVLKLRALAAWC
FT                   PNYVELKCLRGRGIAELDVIAEAKQRLKKPTHPYAYADNEELLRNAIRRVFDEELPRDK
FT                   VVLRPKDDFWSSRWLWAANGGHSRALEHAHPELRTRKEVRAYRKCVLEQWRNNPMDAWD
FT                   GQVYVTPSQKLEHGKSRLLLACDTLSYLWFEYYLKPVETAWLNKRTLLNPGVVNHYSMA
FT                   KKVKVLLADAEHDETNIERGTKLYSLDFEDFNSQHSLAAQKMVFEELFKHVGIENEETR
FT                   KVVSSFERMIVYNGKEPLGRVHGTLMSGHRATTFINTILNTAYLYVAGLHTDFSYHVGD
FT                   DVIFSTGCAEAARLYDCLKHYGVRCNPHKQCASEYSGEFLRVAHTKHYSTGYVARAIAS
FT                   CVSGNWVSDHVLDRREALTNAISCVRTIMNRTQSDEDNPIGRVVALSVAKRCCVEEKHI
FT                   RKLLYGKACLGEGVIYGKLCSSATKVDINVNMDYDKTRTFKYEMFATADYLRHHTSYAE
FT                   SVMLRQYGADIADIMAQSSWMKSMEASSRVSPSSMRVTLSRSDLGVFTMPVCDVERFPV
FT                   RKGVFEKYPLLMMIKERIPLREALDLAQGIGYIAPHGCAEDLWGGTMRLCAIDGVLPYA
FT                   MLVNWHAPVPCNGVRLVVDHNVYA"
XX
SQ   Sequence 5241 BP; 1467 A; 1084 C; 1330 G; 1360 T; 0 other;

U32108  Length: 5241  December 21, 2001 15:58  Type: N  Check: 4634  ..

       1  gaattcaaac ccaatcttca gggattgctg gtttggattc agagctcact
      51  ataaatagtg gataaagctc ctcaggtcga gtgaatcggc ccactggtag
     101  ggtaatactg acgacccagt gttcaatagt tgcttaagtt tcgtgctgga
     151  gctacccggc tgtaaaaccc gatagttaat cactcgcgtc acctcaatgg
     201  tttgtcggtc tgtaaggcct gcgattctta ttctaacacc tgttgatgcc
     251  ggaaaaaata gggtaatggg ttggcacccc gctccgtacg ttttccagtc
     301  tctggtctac tattgaatct caatctatat ccactgcaaa atgacttcac
     351  cgattccaca aatgaataca tctgtattca atctaactcg aggtcgacgt
     401  gttgtatcag gagatacatc tgaaagagtt tacacggcgg tcctcaacta
     451  ttgctcgaca gttcgtcagt cttaccaggc tacgacgaat gttcattggc
     501  gtctaaaaca gagaggaaaa aaggcgtcac atgtaagccg ggcacacgct
     551  ggtatttctg catcatttga ttatgctgat aacttgaaac aggagatact
     601  aaaataccac tctcgacatg tgtgtacaga gatagtcgta ggtcgagatt
     651  acaggttcga ttttcgtagc ttgttacatc atgcaggggc ttgtatggct
     701  cactactgtt tgactggcgt tttggacttg aacgtactca gcagtggtaa
     751  gtcaggtggt acgcgagtca ctgtgttatc aaacgctgat gggttgtcga
     801  tcttagcgac ggacgtctta tacctaccga acgcactcaa gatgatggat
     851  ataaatatat tcaattgtat atatctgctt gctgctgcat gtgagtgtaa
     901  catcgttttt gatgatgtta ttttaactgg gggcacttca gcatacaacg
     951  taccagccct aaactcagtc acagtggagt atgcacctac actacacaat
    1001  tatatatctg ttgcatttac aagcaacgga gatggcggtt gtgatggagc
    1051  attggcactt acggcaggtt tacatactgt tgtaacagtc gttgcgcaca
    1101  gtgacgaagg aggacagatg cgtgatgttt tgcgagcgct acactatgca
    1151  ccggcgaaag gtatcgtcgt ggctgaccca aaccgtactg tcaaccattc
    1201  gctaccatta ctgatgtatg aaccaacgtg ggattctgtt tgtggtatgt
    1251  gggattacgt ggctgtggca acagcaggtt tggtacactt gtgcgaccca
    1301  tgtgagttaa tagctcatga tgtctaccca acgataatca ctgctcccga
    1351  tgagaacaac gtacgtgcaa tagaagctcg tgttgaggct gcactaccag
    1401  ctttcgcttc gatatacatc cataatctgg caatgttcat gggtgtaggt
    1451  ggcgacgatt gcggacgtgc ggtagatacg ttggttgaag ccggtgttta
    1501  tatctactca cttacaggca atgatgccag tcgtcatatg ctcaagggaa
    1551  ctatggcacc ctggttctgg gttgagtcta caggcttgtt ccgggacctc
    1601  acgtgcttca atatacctgg tttgagcgct ggctatggtc ctcaagcgat
    1651  atatggcaca gccattaccc agccagccat gcaagcttgc gaatatacag
    1701  gtactcgagg atcatacgat tattacaatg tcgggtggac atcattacgc
    1751  aagcacccgc ttcttgtcct tacaaacaac agagctggtg acggcattgc
    1801  acatatggag gtagggcgtg atgcggccat accgtgggtc ttgctgggac
    1851  aaccacaaag acgtgagtgt actgcgcaag gtcacgggac ccagactgca
    1901  acgtgtggac atacaaaaca caatcgaggg actttggatg aatatatctg
    1951  gggtagattt tccacgggcc tattccaccc agccgagcta acaaccttta
    2001  ctaacgtgga gttccgcgtt aagtgttgga cggaagacaa tgacggtaac
    2051  gtactcgaaa caggtgcacc agtcaaggat attgtggaag ggggggttac
    2101  tgtgagtgtg aacgcaatac tacttacaaa ttccaccaat cacatacgta
    2151  cggtaccagc agtccgacgt agttaccaag ctggcgcgaa gtatctcgaa
    2201  gaagcacgaa gccgtggtac gatgtctaca cttaatagaa taataggagg
    2251  acaacttttt agggatcttc aacctataag caagcgaggg gtgccgccac
    2301  agcccgagcc tgtatgtgca agcatgcctg ttgaaacaac gaaagaggtt
    2351  agtctgtcaa ggatcggacc aattcgtatc aaccaaaacg ttttcagacc
    2401  acgaccacaa cctacagaag aagagatgca tgaagaacca acgccagtag
    2451  cgctcgaagc agagccacca ggcgaaaatg tgtaagtgac ggattgggag
    2501  tctaagttca agagtaggtt ggcaaacgtg gttgaactgt taaggtatga
    2551  tgcactaaca gagccctgtg gcggggaaac taaccttaga gtgagcgaag
    2601  aaacatgctc cggaatccca gtacttcagg aggcgtgtat tcgaagattt
    2651  gtggaggaaa ggttcaattt tatagcaaga attactggaa agagtgatcg
    2701  gcaggggcgg tggagagcag ttattaaata cgtgttctca gtccctcatt
    2751  atacaaacat acacgacacc aagatttttg gtgtaacgat tactaagaat
    2801  aatattcacc gcatattatt catatttgct tgtgtcttga tattttgcac
    2851  ctacgaaatg cgagcgaaac tcacaaaagt tgttgaaggt gatttatctg
    2901  tatttatgcc aaatgcaaga attaaacgtg agtcacaaaa tgcgagcgat
    2951  ctacatcatt tccttgaatc agtggttgag ggcatcgcta taccacagcc
    3001  tgactccctg atattatcgc tggagggagt gttgggtcat aagtacaaac
    3051  ttaagcaaca tattggtgca agtacaaaag ttaacatcca tgctagcgag
    3101  gtgattgcag gaagtcgtaa atatgctcgt acggtatata gacagtacgt
    3151  gcaaatgagt agtctttttt cgggcatgta tgatgatcac gttgctggta
    3201  tattgttgta cagcatatca acgttgaagc actgtgatgt tcatgtggct
    3251  atggcctatg cgattgcagc agtcagagac ttaacacaaa gtgtgatcgc
    3301  ggacttaagt gatgtactca agctgcgtgc actagcagct tggtgtccca
    3351  attatgttga gctaaagtgc ctacgtggtc gaggcattgc tgagcttgat
    3401  gttattgctg aagcaaagca gcgcctaaag aaaccaacac acccatatgc
    3451  ttatgctgat aacgaagagc tactacgtaa cgctattcga agagtctttg
    3501  atgaagagtt gccaagagac aaagtggtgt tgaggcccaa agatgacttt
    3551  tggtcgtctc gctggctatg ggcggctaat ggcggtcatt cacgagcact
    3601  agaacatgca cacccagaac tgcgaactcg aaaagaagtc cgagcgtatc
    3651  gtaagtgtgt gctcgagcag tggcggaata acccgatgga cgcgtgggat
    3701  ggtcaggtat atgttacacc cagtcagaaa ttagagcatg gcaagagcag
    3751  actcctgctg gcgtgtgaca ctctttctta cctatggttt gagtattacc
    3801  taaagcctgt tgaaacagcg tggttgaata aacgcacgct gctcaacccc
    3851  ggtgttgtta accattattc aatggctaag aaagttaaag tgttattggc
    3901  tgacgcagaa cacgatgaaa ctaatattga gcgcgggaca aagctgtata
    3951  gcctggattt tgaagacttc aattcacagc actcactagc tgctcagaaa
    4001  atggtgtttg aagagctatt caaacatgtt ggtattgaaa atgaggaaac
    4051  acgaaaagta gtgagcagct tcgagcgaat gatagtgtac aatgggaaag
    4101  agcctctagg tcgagtacat ggcacattaa tgagcggaca ccgtgctaca
    4151  acttttatta acaccatatt aaacactgcg tatctatatg ttgccgggtt
    4201  acacaccgat ttctcatatc acgttggtga cgatgtcata ttcagtacgg
    4251  gctgtgctga ggctgcacgt ttgtatgatt gtctaaaaca ttatggcgtg
    4301  cggtgtaacc cacataaaca gtgtgcaagt gaatatagtg gtgagttctt
    4351  acgcgttgct cacacgaaac actatagtac tgggtatgtc gcacgtgcta
    4401  ttgcaagctg tgtcagcggt aattgggtgt ctgatcacgt cttggaccgg
    4451  cgagaagcat tgacaaatgc tatatcatgt gtcagaacga ttatgaatcg
    4501  tacacaatct gatgaggaca atccaatagg tcgtgttgta gcactaagcg
    4551  ttgcgaagcg atgttgtgtc gaagaaaaac acatacgcaa attactgtac
    4601  ggtaaagctt gtttgggcga aggcgtaatc tacgggaagc tgtgcagcag
    4651  tgcgacgaaa gttgatataa atgtcaatat ggattatgac aagacacgga
    4701  cattcaaata tgaaatgttt gccacagcgg attatctacg acaccataca
    4751  tcatacgctg agagtgtgat gctgcgacaa tacggtgctg acatagctga
    4801  tatcatggcc cagtcaagct ggatgaaatc catggaggca agctcacgag
    4851  tcagtccttc aagtatgcgc gtcacgttgt cacgtagtga tttaggtgta
    4901  ttcacgatgc cagtatgtga tgttgaacgt ttcccagtcc gtaaaggcgt
    4951  gtttgaaaaa tatccattat tgatgatgat caaagaacga ataccattac
    5001  gcgaggcact agatctggca cagggaatag gatacattgc cccacatggt
    5051  tgtgcggagg atctttgggg cggaactatg cgtttgtgtg caatagacgg
    5101  tgtattaccg tatgcgatgc ttgtcaattg gcatgcgccg gtaccatgta
    5151  acggagtgag gctagtcgta gaccacaatg tctacgcata attgaccgag
    5201  ctaggcgtac ctagcaatgt gcgaaggggc attgcgagtc t