Sequence of DPV Leishmania RNA virus 2-1
Leishmania RNA virus 2-1, complete genome.
ACC No: U32108
Dated: 2000-03-04 | Length: 5241 | CRC: 653893080
!!NA_SEQUENCE 1.0 ID LR32108 standard; RNA; VRL; 5241 BP. XX AC U32108; XX SV U32108.1 XX DT 03-NOV-1995 (Rel. 45, Created) DT 04-MAR-2000 (Rel. 63, Last updated, Version 3) XX DE Leishmania RNA virus 2-1, complete genome. XX KW . XX OS Leishmania RNA virus 2-1 OC Viruses; dsRNA viruses; Totiviridae; Leishmaniavirus. XX RN [1] RP 1-5241 RX MEDLINE; 95407119. RA Scheffter S.M., Ro Y.T., Chung I.K., Patterson J.L.; RT "The complete sequence of Leishmania RNA virus LRV2-1, a virus of an Old RT World parasite strain"; RL Virology 212(1):84-90(1995). XX RN [2] RP 1-5241 RA Scheffter S.M.; RT ; RL Submitted (21-JUL-1995) to the EMBL/GenBank/DDBJ databases. RL Scott M. Scheffter, Microbiology and Molecular Genetics, Harvard Medical RL School, 300 Longwood Avenue, Boston, MA 02115, USA XX DR SPTREMBL; Q83071; Q83071. DR SPTREMBL; Q83072; Q83072. DR SPTREMBL; Q83073; Q83073. XX FH Key Location/Qualifiers FH FT source 1. .5241 FT /db_xref="taxon:39116" FT /organism="Leishmania RNA virus 2-1" FT /specific_host="Leishmania major" FT /lab_host="Leishmania major" FT CDS 197. .316 FT /codon_start=1 FT /db_xref="SPTREMBL:Q83071" FT /evidence=NOT_EXPERIMENTAL FT /function="possible role in regulating internal translation FT initiation" FT /product="unknown" FT /protein_id="AAB50029.1" FT /translation="MVCRSVRPAILILTPVDAGKNRVMGWHPAPYVFQSLVYY" FT CDS 341. .2485 FT /codon_start=1 FT /db_xref="SPTREMBL:Q83072" FT /evidence=EXPERIMENTAL FT /product="major capsid protein" FT /protein_id="AAB50030.1" FT /translation="MTSPIPQMNTSVFNLTRGRRVVSGDTSERVYTAVLNYCSTVRQSY FT QATTNVHWRLKQRGKKASHVSRAHAGISASFDYADNLKQEILKYHSRHVCTEIVVGRDY FT RFDFRSLLHHAGACMAHYCLTGVLDLNVLSSGKSGGTRVTVLSNADGLSILATDVLYLP FT NALKMMDINIFNCIYLLAAACECNIVFDDVILTGGTSAYNVPALNSVTVEYAPTLHNYI FT SVAFTSNGDGGCDGALALTAGLHTVVTVVAHSDEGGQMRDVLRALHYAPAKGIVVADPN FT RTVNHSLPLLMYEPTWDSVCGMWDYVAVATAGLVHLCDPCELIAHDVYPTIITAPDENN FT VRAIEARVEAALPAFASIYIHNLAMFMGVGGDDCGRAVDTLVEAGVYIYSLTGNDASRH FT MLKGTMAPWFWVESTGLFRDLTCFNIPGLSAGYGPQAIYGTAITQPAMQACEYTGTRGS FT YDYYNVGWTSLRKHPLLVLTNNRAGDGIAHMEVGRDAAIPWVLLGQPQRRECTAQGHGT FT QTATCGHTKHNRGTLDEYIWGRFSTGLFHPAELTTFTNVEFRVKCWTEDNDGNVLETGA FT PVKDIVEGGVTVSVNAILLTNSTNHIRTVPAVRRSYQAGAKYLEEARSRGTMSTLNRII FT GGQLFRDLQPISKRGVPPQPEPVCASMPVETTKEVSLSRIGPIRINQNVFRPRPQPTEE FT EMHEEPTPVALEAEPPGENV" FT CDS 2858. .5191 FT /codon_start=1 FT /db_xref="SPTREMBL:Q83073" FT /note="putative RNA-dependent RNA polymerase; RDRP" FT /function="transcriptase, replicase" FT /product="RNA-dependent RNA polymerase" FT /protein_id="AAB50031.1" FT /translation="MRAKLTKVVEGDLSVFMPNARIKRESQNASDLHHFLESVVEGIAI FT PQPDSLILSLEGVLGHKYKLKQHIGASTKVNIHASEVIAGSRKYARTVYRQYVQMSSLF FT SGMYDDHVAGILLYSISTLKHCDVHVAMAYAIAAVRDLTQSVIADLSDVLKLRALAAWC FT PNYVELKCLRGRGIAELDVIAEAKQRLKKPTHPYAYADNEELLRNAIRRVFDEELPRDK FT VVLRPKDDFWSSRWLWAANGGHSRALEHAHPELRTRKEVRAYRKCVLEQWRNNPMDAWD FT GQVYVTPSQKLEHGKSRLLLACDTLSYLWFEYYLKPVETAWLNKRTLLNPGVVNHYSMA FT KKVKVLLADAEHDETNIERGTKLYSLDFEDFNSQHSLAAQKMVFEELFKHVGIENEETR FT KVVSSFERMIVYNGKEPLGRVHGTLMSGHRATTFINTILNTAYLYVAGLHTDFSYHVGD FT DVIFSTGCAEAARLYDCLKHYGVRCNPHKQCASEYSGEFLRVAHTKHYSTGYVARAIAS FT CVSGNWVSDHVLDRREALTNAISCVRTIMNRTQSDEDNPIGRVVALSVAKRCCVEEKHI FT RKLLYGKACLGEGVIYGKLCSSATKVDINVNMDYDKTRTFKYEMFATADYLRHHTSYAE FT SVMLRQYGADIADIMAQSSWMKSMEASSRVSPSSMRVTLSRSDLGVFTMPVCDVERFPV FT RKGVFEKYPLLMMIKERIPLREALDLAQGIGYIAPHGCAEDLWGGTMRLCAIDGVLPYA FT MLVNWHAPVPCNGVRLVVDHNVYA" XX SQ Sequence 5241 BP; 1467 A; 1084 C; 1330 G; 1360 T; 0 other; U32108 Length: 5241 December 21, 2001 15:58 Type: N Check: 4634 .. 1 gaattcaaac ccaatcttca gggattgctg gtttggattc agagctcact 51 ataaatagtg gataaagctc ctcaggtcga gtgaatcggc ccactggtag 101 ggtaatactg acgacccagt gttcaatagt tgcttaagtt tcgtgctgga 151 gctacccggc tgtaaaaccc gatagttaat cactcgcgtc acctcaatgg 201 tttgtcggtc tgtaaggcct gcgattctta ttctaacacc tgttgatgcc 251 ggaaaaaata gggtaatggg ttggcacccc gctccgtacg ttttccagtc 301 tctggtctac tattgaatct caatctatat ccactgcaaa atgacttcac 351 cgattccaca aatgaataca tctgtattca atctaactcg aggtcgacgt 401 gttgtatcag gagatacatc tgaaagagtt tacacggcgg tcctcaacta 451 ttgctcgaca gttcgtcagt cttaccaggc tacgacgaat gttcattggc 501 gtctaaaaca gagaggaaaa aaggcgtcac atgtaagccg ggcacacgct 551 ggtatttctg catcatttga ttatgctgat aacttgaaac aggagatact 601 aaaataccac tctcgacatg tgtgtacaga gatagtcgta ggtcgagatt 651 acaggttcga ttttcgtagc ttgttacatc atgcaggggc ttgtatggct 701 cactactgtt tgactggcgt tttggacttg aacgtactca gcagtggtaa 751 gtcaggtggt acgcgagtca ctgtgttatc aaacgctgat gggttgtcga 801 tcttagcgac ggacgtctta tacctaccga acgcactcaa gatgatggat 851 ataaatatat tcaattgtat atatctgctt gctgctgcat gtgagtgtaa 901 catcgttttt gatgatgtta ttttaactgg gggcacttca gcatacaacg 951 taccagccct aaactcagtc acagtggagt atgcacctac actacacaat 1001 tatatatctg ttgcatttac aagcaacgga gatggcggtt gtgatggagc 1051 attggcactt acggcaggtt tacatactgt tgtaacagtc gttgcgcaca 1101 gtgacgaagg aggacagatg cgtgatgttt tgcgagcgct acactatgca 1151 ccggcgaaag gtatcgtcgt ggctgaccca aaccgtactg tcaaccattc 1201 gctaccatta ctgatgtatg aaccaacgtg ggattctgtt tgtggtatgt 1251 gggattacgt ggctgtggca acagcaggtt tggtacactt gtgcgaccca 1301 tgtgagttaa tagctcatga tgtctaccca acgataatca ctgctcccga 1351 tgagaacaac gtacgtgcaa tagaagctcg tgttgaggct gcactaccag 1401 ctttcgcttc gatatacatc cataatctgg caatgttcat gggtgtaggt 1451 ggcgacgatt gcggacgtgc ggtagatacg ttggttgaag ccggtgttta 1501 tatctactca cttacaggca atgatgccag tcgtcatatg ctcaagggaa 1551 ctatggcacc ctggttctgg gttgagtcta caggcttgtt ccgggacctc 1601 acgtgcttca atatacctgg tttgagcgct ggctatggtc ctcaagcgat 1651 atatggcaca gccattaccc agccagccat gcaagcttgc gaatatacag 1701 gtactcgagg atcatacgat tattacaatg tcgggtggac atcattacgc 1751 aagcacccgc ttcttgtcct tacaaacaac agagctggtg acggcattgc 1801 acatatggag gtagggcgtg atgcggccat accgtgggtc ttgctgggac 1851 aaccacaaag acgtgagtgt actgcgcaag gtcacgggac ccagactgca 1901 acgtgtggac atacaaaaca caatcgaggg actttggatg aatatatctg 1951 gggtagattt tccacgggcc tattccaccc agccgagcta acaaccttta 2001 ctaacgtgga gttccgcgtt aagtgttgga cggaagacaa tgacggtaac 2051 gtactcgaaa caggtgcacc agtcaaggat attgtggaag ggggggttac 2101 tgtgagtgtg aacgcaatac tacttacaaa ttccaccaat cacatacgta 2151 cggtaccagc agtccgacgt agttaccaag ctggcgcgaa gtatctcgaa 2201 gaagcacgaa gccgtggtac gatgtctaca cttaatagaa taataggagg 2251 acaacttttt agggatcttc aacctataag caagcgaggg gtgccgccac 2301 agcccgagcc tgtatgtgca agcatgcctg ttgaaacaac gaaagaggtt 2351 agtctgtcaa ggatcggacc aattcgtatc aaccaaaacg ttttcagacc 2401 acgaccacaa cctacagaag aagagatgca tgaagaacca acgccagtag 2451 cgctcgaagc agagccacca ggcgaaaatg tgtaagtgac ggattgggag 2501 tctaagttca agagtaggtt ggcaaacgtg gttgaactgt taaggtatga 2551 tgcactaaca gagccctgtg gcggggaaac taaccttaga gtgagcgaag 2601 aaacatgctc cggaatccca gtacttcagg aggcgtgtat tcgaagattt 2651 gtggaggaaa ggttcaattt tatagcaaga attactggaa agagtgatcg 2701 gcaggggcgg tggagagcag ttattaaata cgtgttctca gtccctcatt 2751 atacaaacat acacgacacc aagatttttg gtgtaacgat tactaagaat 2801 aatattcacc gcatattatt catatttgct tgtgtcttga tattttgcac 2851 ctacgaaatg cgagcgaaac tcacaaaagt tgttgaaggt gatttatctg 2901 tatttatgcc aaatgcaaga attaaacgtg agtcacaaaa tgcgagcgat 2951 ctacatcatt tccttgaatc agtggttgag ggcatcgcta taccacagcc 3001 tgactccctg atattatcgc tggagggagt gttgggtcat aagtacaaac 3051 ttaagcaaca tattggtgca agtacaaaag ttaacatcca tgctagcgag 3101 gtgattgcag gaagtcgtaa atatgctcgt acggtatata gacagtacgt 3151 gcaaatgagt agtctttttt cgggcatgta tgatgatcac gttgctggta 3201 tattgttgta cagcatatca acgttgaagc actgtgatgt tcatgtggct 3251 atggcctatg cgattgcagc agtcagagac ttaacacaaa gtgtgatcgc 3301 ggacttaagt gatgtactca agctgcgtgc actagcagct tggtgtccca 3351 attatgttga gctaaagtgc ctacgtggtc gaggcattgc tgagcttgat 3401 gttattgctg aagcaaagca gcgcctaaag aaaccaacac acccatatgc 3451 ttatgctgat aacgaagagc tactacgtaa cgctattcga agagtctttg 3501 atgaagagtt gccaagagac aaagtggtgt tgaggcccaa agatgacttt 3551 tggtcgtctc gctggctatg ggcggctaat ggcggtcatt cacgagcact 3601 agaacatgca cacccagaac tgcgaactcg aaaagaagtc cgagcgtatc 3651 gtaagtgtgt gctcgagcag tggcggaata acccgatgga cgcgtgggat 3701 ggtcaggtat atgttacacc cagtcagaaa ttagagcatg gcaagagcag 3751 actcctgctg gcgtgtgaca ctctttctta cctatggttt gagtattacc 3801 taaagcctgt tgaaacagcg tggttgaata aacgcacgct gctcaacccc 3851 ggtgttgtta accattattc aatggctaag aaagttaaag tgttattggc 3901 tgacgcagaa cacgatgaaa ctaatattga gcgcgggaca aagctgtata 3951 gcctggattt tgaagacttc aattcacagc actcactagc tgctcagaaa 4001 atggtgtttg aagagctatt caaacatgtt ggtattgaaa atgaggaaac 4051 acgaaaagta gtgagcagct tcgagcgaat gatagtgtac aatgggaaag 4101 agcctctagg tcgagtacat ggcacattaa tgagcggaca ccgtgctaca 4151 acttttatta acaccatatt aaacactgcg tatctatatg ttgccgggtt 4201 acacaccgat ttctcatatc acgttggtga cgatgtcata ttcagtacgg 4251 gctgtgctga ggctgcacgt ttgtatgatt gtctaaaaca ttatggcgtg 4301 cggtgtaacc cacataaaca gtgtgcaagt gaatatagtg gtgagttctt 4351 acgcgttgct cacacgaaac actatagtac tgggtatgtc gcacgtgcta 4401 ttgcaagctg tgtcagcggt aattgggtgt ctgatcacgt cttggaccgg 4451 cgagaagcat tgacaaatgc tatatcatgt gtcagaacga ttatgaatcg 4501 tacacaatct gatgaggaca atccaatagg tcgtgttgta gcactaagcg 4551 ttgcgaagcg atgttgtgtc gaagaaaaac acatacgcaa attactgtac 4601 ggtaaagctt gtttgggcga aggcgtaatc tacgggaagc tgtgcagcag 4651 tgcgacgaaa gttgatataa atgtcaatat ggattatgac aagacacgga 4701 cattcaaata tgaaatgttt gccacagcgg attatctacg acaccataca 4751 tcatacgctg agagtgtgat gctgcgacaa tacggtgctg acatagctga 4801 tatcatggcc cagtcaagct ggatgaaatc catggaggca agctcacgag 4851 tcagtccttc aagtatgcgc gtcacgttgt cacgtagtga tttaggtgta 4901 ttcacgatgc cagtatgtga tgttgaacgt ttcccagtcc gtaaaggcgt 4951 gtttgaaaaa tatccattat tgatgatgat caaagaacga ataccattac 5001 gcgaggcact agatctggca cagggaatag gatacattgc cccacatggt 5051 tgtgcggagg atctttgggg cggaactatg cgtttgtgtg caatagacgg 5101 tgtattaccg tatgcgatgc ttgtcaattg gcatgcgccg gtaccatgta 5151 acggagtgag gctagtcgta gaccacaatg tctacgcata attgaccgag 5201 ctaggcgtac ctagcaatgt gcgaaggggc attgcgagtc t