Sequence of DPV Leishmania RNA virus 2-1
Leishmania RNA virus 2-1, complete genome.
ACC No: U32108
Dated: 2000-03-04 | Length: 5241 | CRC: 653893080
!!NA_SEQUENCE 1.0
ID LR32108 standard; RNA; VRL; 5241 BP.
XX
AC U32108;
XX
SV U32108.1
XX
DT 03-NOV-1995 (Rel. 45, Created)
DT 04-MAR-2000 (Rel. 63, Last updated, Version 3)
XX
DE Leishmania RNA virus 2-1, complete genome.
XX
KW .
XX
OS Leishmania RNA virus 2-1
OC Viruses; dsRNA viruses; Totiviridae; Leishmaniavirus.
XX
RN [1]
RP 1-5241
RX MEDLINE; 95407119.
RA Scheffter S.M., Ro Y.T., Chung I.K., Patterson J.L.;
RT "The complete sequence of Leishmania RNA virus LRV2-1, a virus of an Old
RT World parasite strain";
RL Virology 212(1):84-90(1995).
XX
RN [2]
RP 1-5241
RA Scheffter S.M.;
RT ;
RL Submitted (21-JUL-1995) to the EMBL/GenBank/DDBJ databases.
RL Scott M. Scheffter, Microbiology and Molecular Genetics, Harvard Medical
RL School, 300 Longwood Avenue, Boston, MA 02115, USA
XX
DR SPTREMBL; Q83071; Q83071.
DR SPTREMBL; Q83072; Q83072.
DR SPTREMBL; Q83073; Q83073.
XX
FH Key Location/Qualifiers
FH
FT source 1. .5241
FT /db_xref="taxon:39116"
FT /organism="Leishmania RNA virus 2-1"
FT /specific_host="Leishmania major"
FT /lab_host="Leishmania major"
FT CDS 197. .316
FT /codon_start=1
FT /db_xref="SPTREMBL:Q83071"
FT /evidence=NOT_EXPERIMENTAL
FT /function="possible role in regulating internal translation
FT initiation"
FT /product="unknown"
FT /protein_id="AAB50029.1"
FT /translation="MVCRSVRPAILILTPVDAGKNRVMGWHPAPYVFQSLVYY"
FT CDS 341. .2485
FT /codon_start=1
FT /db_xref="SPTREMBL:Q83072"
FT /evidence=EXPERIMENTAL
FT /product="major capsid protein"
FT /protein_id="AAB50030.1"
FT /translation="MTSPIPQMNTSVFNLTRGRRVVSGDTSERVYTAVLNYCSTVRQSY
FT QATTNVHWRLKQRGKKASHVSRAHAGISASFDYADNLKQEILKYHSRHVCTEIVVGRDY
FT RFDFRSLLHHAGACMAHYCLTGVLDLNVLSSGKSGGTRVTVLSNADGLSILATDVLYLP
FT NALKMMDINIFNCIYLLAAACECNIVFDDVILTGGTSAYNVPALNSVTVEYAPTLHNYI
FT SVAFTSNGDGGCDGALALTAGLHTVVTVVAHSDEGGQMRDVLRALHYAPAKGIVVADPN
FT RTVNHSLPLLMYEPTWDSVCGMWDYVAVATAGLVHLCDPCELIAHDVYPTIITAPDENN
FT VRAIEARVEAALPAFASIYIHNLAMFMGVGGDDCGRAVDTLVEAGVYIYSLTGNDASRH
FT MLKGTMAPWFWVESTGLFRDLTCFNIPGLSAGYGPQAIYGTAITQPAMQACEYTGTRGS
FT YDYYNVGWTSLRKHPLLVLTNNRAGDGIAHMEVGRDAAIPWVLLGQPQRRECTAQGHGT
FT QTATCGHTKHNRGTLDEYIWGRFSTGLFHPAELTTFTNVEFRVKCWTEDNDGNVLETGA
FT PVKDIVEGGVTVSVNAILLTNSTNHIRTVPAVRRSYQAGAKYLEEARSRGTMSTLNRII
FT GGQLFRDLQPISKRGVPPQPEPVCASMPVETTKEVSLSRIGPIRINQNVFRPRPQPTEE
FT EMHEEPTPVALEAEPPGENV"
FT CDS 2858. .5191
FT /codon_start=1
FT /db_xref="SPTREMBL:Q83073"
FT /note="putative RNA-dependent RNA polymerase; RDRP"
FT /function="transcriptase, replicase"
FT /product="RNA-dependent RNA polymerase"
FT /protein_id="AAB50031.1"
FT /translation="MRAKLTKVVEGDLSVFMPNARIKRESQNASDLHHFLESVVEGIAI
FT PQPDSLILSLEGVLGHKYKLKQHIGASTKVNIHASEVIAGSRKYARTVYRQYVQMSSLF
FT SGMYDDHVAGILLYSISTLKHCDVHVAMAYAIAAVRDLTQSVIADLSDVLKLRALAAWC
FT PNYVELKCLRGRGIAELDVIAEAKQRLKKPTHPYAYADNEELLRNAIRRVFDEELPRDK
FT VVLRPKDDFWSSRWLWAANGGHSRALEHAHPELRTRKEVRAYRKCVLEQWRNNPMDAWD
FT GQVYVTPSQKLEHGKSRLLLACDTLSYLWFEYYLKPVETAWLNKRTLLNPGVVNHYSMA
FT KKVKVLLADAEHDETNIERGTKLYSLDFEDFNSQHSLAAQKMVFEELFKHVGIENEETR
FT KVVSSFERMIVYNGKEPLGRVHGTLMSGHRATTFINTILNTAYLYVAGLHTDFSYHVGD
FT DVIFSTGCAEAARLYDCLKHYGVRCNPHKQCASEYSGEFLRVAHTKHYSTGYVARAIAS
FT CVSGNWVSDHVLDRREALTNAISCVRTIMNRTQSDEDNPIGRVVALSVAKRCCVEEKHI
FT RKLLYGKACLGEGVIYGKLCSSATKVDINVNMDYDKTRTFKYEMFATADYLRHHTSYAE
FT SVMLRQYGADIADIMAQSSWMKSMEASSRVSPSSMRVTLSRSDLGVFTMPVCDVERFPV
FT RKGVFEKYPLLMMIKERIPLREALDLAQGIGYIAPHGCAEDLWGGTMRLCAIDGVLPYA
FT MLVNWHAPVPCNGVRLVVDHNVYA"
XX
SQ Sequence 5241 BP; 1467 A; 1084 C; 1330 G; 1360 T; 0 other;
U32108 Length: 5241 December 21, 2001 15:58 Type: N Check: 4634 ..
1 gaattcaaac ccaatcttca gggattgctg gtttggattc agagctcact
51 ataaatagtg gataaagctc ctcaggtcga gtgaatcggc ccactggtag
101 ggtaatactg acgacccagt gttcaatagt tgcttaagtt tcgtgctgga
151 gctacccggc tgtaaaaccc gatagttaat cactcgcgtc acctcaatgg
201 tttgtcggtc tgtaaggcct gcgattctta ttctaacacc tgttgatgcc
251 ggaaaaaata gggtaatggg ttggcacccc gctccgtacg ttttccagtc
301 tctggtctac tattgaatct caatctatat ccactgcaaa atgacttcac
351 cgattccaca aatgaataca tctgtattca atctaactcg aggtcgacgt
401 gttgtatcag gagatacatc tgaaagagtt tacacggcgg tcctcaacta
451 ttgctcgaca gttcgtcagt cttaccaggc tacgacgaat gttcattggc
501 gtctaaaaca gagaggaaaa aaggcgtcac atgtaagccg ggcacacgct
551 ggtatttctg catcatttga ttatgctgat aacttgaaac aggagatact
601 aaaataccac tctcgacatg tgtgtacaga gatagtcgta ggtcgagatt
651 acaggttcga ttttcgtagc ttgttacatc atgcaggggc ttgtatggct
701 cactactgtt tgactggcgt tttggacttg aacgtactca gcagtggtaa
751 gtcaggtggt acgcgagtca ctgtgttatc aaacgctgat gggttgtcga
801 tcttagcgac ggacgtctta tacctaccga acgcactcaa gatgatggat
851 ataaatatat tcaattgtat atatctgctt gctgctgcat gtgagtgtaa
901 catcgttttt gatgatgtta ttttaactgg gggcacttca gcatacaacg
951 taccagccct aaactcagtc acagtggagt atgcacctac actacacaat
1001 tatatatctg ttgcatttac aagcaacgga gatggcggtt gtgatggagc
1051 attggcactt acggcaggtt tacatactgt tgtaacagtc gttgcgcaca
1101 gtgacgaagg aggacagatg cgtgatgttt tgcgagcgct acactatgca
1151 ccggcgaaag gtatcgtcgt ggctgaccca aaccgtactg tcaaccattc
1201 gctaccatta ctgatgtatg aaccaacgtg ggattctgtt tgtggtatgt
1251 gggattacgt ggctgtggca acagcaggtt tggtacactt gtgcgaccca
1301 tgtgagttaa tagctcatga tgtctaccca acgataatca ctgctcccga
1351 tgagaacaac gtacgtgcaa tagaagctcg tgttgaggct gcactaccag
1401 ctttcgcttc gatatacatc cataatctgg caatgttcat gggtgtaggt
1451 ggcgacgatt gcggacgtgc ggtagatacg ttggttgaag ccggtgttta
1501 tatctactca cttacaggca atgatgccag tcgtcatatg ctcaagggaa
1551 ctatggcacc ctggttctgg gttgagtcta caggcttgtt ccgggacctc
1601 acgtgcttca atatacctgg tttgagcgct ggctatggtc ctcaagcgat
1651 atatggcaca gccattaccc agccagccat gcaagcttgc gaatatacag
1701 gtactcgagg atcatacgat tattacaatg tcgggtggac atcattacgc
1751 aagcacccgc ttcttgtcct tacaaacaac agagctggtg acggcattgc
1801 acatatggag gtagggcgtg atgcggccat accgtgggtc ttgctgggac
1851 aaccacaaag acgtgagtgt actgcgcaag gtcacgggac ccagactgca
1901 acgtgtggac atacaaaaca caatcgaggg actttggatg aatatatctg
1951 gggtagattt tccacgggcc tattccaccc agccgagcta acaaccttta
2001 ctaacgtgga gttccgcgtt aagtgttgga cggaagacaa tgacggtaac
2051 gtactcgaaa caggtgcacc agtcaaggat attgtggaag ggggggttac
2101 tgtgagtgtg aacgcaatac tacttacaaa ttccaccaat cacatacgta
2151 cggtaccagc agtccgacgt agttaccaag ctggcgcgaa gtatctcgaa
2201 gaagcacgaa gccgtggtac gatgtctaca cttaatagaa taataggagg
2251 acaacttttt agggatcttc aacctataag caagcgaggg gtgccgccac
2301 agcccgagcc tgtatgtgca agcatgcctg ttgaaacaac gaaagaggtt
2351 agtctgtcaa ggatcggacc aattcgtatc aaccaaaacg ttttcagacc
2401 acgaccacaa cctacagaag aagagatgca tgaagaacca acgccagtag
2451 cgctcgaagc agagccacca ggcgaaaatg tgtaagtgac ggattgggag
2501 tctaagttca agagtaggtt ggcaaacgtg gttgaactgt taaggtatga
2551 tgcactaaca gagccctgtg gcggggaaac taaccttaga gtgagcgaag
2601 aaacatgctc cggaatccca gtacttcagg aggcgtgtat tcgaagattt
2651 gtggaggaaa ggttcaattt tatagcaaga attactggaa agagtgatcg
2701 gcaggggcgg tggagagcag ttattaaata cgtgttctca gtccctcatt
2751 atacaaacat acacgacacc aagatttttg gtgtaacgat tactaagaat
2801 aatattcacc gcatattatt catatttgct tgtgtcttga tattttgcac
2851 ctacgaaatg cgagcgaaac tcacaaaagt tgttgaaggt gatttatctg
2901 tatttatgcc aaatgcaaga attaaacgtg agtcacaaaa tgcgagcgat
2951 ctacatcatt tccttgaatc agtggttgag ggcatcgcta taccacagcc
3001 tgactccctg atattatcgc tggagggagt gttgggtcat aagtacaaac
3051 ttaagcaaca tattggtgca agtacaaaag ttaacatcca tgctagcgag
3101 gtgattgcag gaagtcgtaa atatgctcgt acggtatata gacagtacgt
3151 gcaaatgagt agtctttttt cgggcatgta tgatgatcac gttgctggta
3201 tattgttgta cagcatatca acgttgaagc actgtgatgt tcatgtggct
3251 atggcctatg cgattgcagc agtcagagac ttaacacaaa gtgtgatcgc
3301 ggacttaagt gatgtactca agctgcgtgc actagcagct tggtgtccca
3351 attatgttga gctaaagtgc ctacgtggtc gaggcattgc tgagcttgat
3401 gttattgctg aagcaaagca gcgcctaaag aaaccaacac acccatatgc
3451 ttatgctgat aacgaagagc tactacgtaa cgctattcga agagtctttg
3501 atgaagagtt gccaagagac aaagtggtgt tgaggcccaa agatgacttt
3551 tggtcgtctc gctggctatg ggcggctaat ggcggtcatt cacgagcact
3601 agaacatgca cacccagaac tgcgaactcg aaaagaagtc cgagcgtatc
3651 gtaagtgtgt gctcgagcag tggcggaata acccgatgga cgcgtgggat
3701 ggtcaggtat atgttacacc cagtcagaaa ttagagcatg gcaagagcag
3751 actcctgctg gcgtgtgaca ctctttctta cctatggttt gagtattacc
3801 taaagcctgt tgaaacagcg tggttgaata aacgcacgct gctcaacccc
3851 ggtgttgtta accattattc aatggctaag aaagttaaag tgttattggc
3901 tgacgcagaa cacgatgaaa ctaatattga gcgcgggaca aagctgtata
3951 gcctggattt tgaagacttc aattcacagc actcactagc tgctcagaaa
4001 atggtgtttg aagagctatt caaacatgtt ggtattgaaa atgaggaaac
4051 acgaaaagta gtgagcagct tcgagcgaat gatagtgtac aatgggaaag
4101 agcctctagg tcgagtacat ggcacattaa tgagcggaca ccgtgctaca
4151 acttttatta acaccatatt aaacactgcg tatctatatg ttgccgggtt
4201 acacaccgat ttctcatatc acgttggtga cgatgtcata ttcagtacgg
4251 gctgtgctga ggctgcacgt ttgtatgatt gtctaaaaca ttatggcgtg
4301 cggtgtaacc cacataaaca gtgtgcaagt gaatatagtg gtgagttctt
4351 acgcgttgct cacacgaaac actatagtac tgggtatgtc gcacgtgcta
4401 ttgcaagctg tgtcagcggt aattgggtgt ctgatcacgt cttggaccgg
4451 cgagaagcat tgacaaatgc tatatcatgt gtcagaacga ttatgaatcg
4501 tacacaatct gatgaggaca atccaatagg tcgtgttgta gcactaagcg
4551 ttgcgaagcg atgttgtgtc gaagaaaaac acatacgcaa attactgtac
4601 ggtaaagctt gtttgggcga aggcgtaatc tacgggaagc tgtgcagcag
4651 tgcgacgaaa gttgatataa atgtcaatat ggattatgac aagacacgga
4701 cattcaaata tgaaatgttt gccacagcgg attatctacg acaccataca
4751 tcatacgctg agagtgtgat gctgcgacaa tacggtgctg acatagctga
4801 tatcatggcc cagtcaagct ggatgaaatc catggaggca agctcacgag
4851 tcagtccttc aagtatgcgc gtcacgttgt cacgtagtga tttaggtgta
4901 ttcacgatgc cagtatgtga tgttgaacgt ttcccagtcc gtaaaggcgt
4951 gtttgaaaaa tatccattat tgatgatgat caaagaacga ataccattac
5001 gcgaggcact agatctggca cagggaatag gatacattgc cccacatggt
5051 tgtgcggagg atctttgggg cggaactatg cgtttgtgtg caatagacgg
5101 tgtattaccg tatgcgatgc ttgtcaattg gcatgcgccg gtaccatgta
5151 acggagtgag gctagtcgta gaccacaatg tctacgcata attgaccgag
5201 ctaggcgtac ctagcaatgt gcgaaggggc attgcgagtc t