Sequence of DPV Rhizoctonia virus M2

Thanatephorus cucumeris mitochondrial virus-like double-stranded RNA element dsRNA viral RNA-dependent RNA polymerase gene, complete cds.

ACC No: U51331

Dated: 2000-06-03 | Length: 3570 | CRC: -2056513447

                !!NA_SEQUENCE 1.0
ID   MITCCU513  standard; RNA; ORG; 3570 BP.
XX
AC   U51331;
XX
SV   U51331.2
XX
DT   03-AUG-1996 (Rel. 48, Created)
DT   03-JUN-2000 (Rel. 63, Last updated, Version 6)
XX
DE   Thanatephorus cucumeris mitochondrial virus-like double-stranded RNA
DE   element dsRNA viral RNA-dependent RNA polymerase gene, complete cds.
XX
KW   .
XX
OS   Thanatephorus cucumeris
OC   Eukaryota; Fungi; Basidiomycota; Hymenomycetes; Heterobasidiomycetes;
OC   Heterobasidiomycetidae; Ceratobasidiales; Ceratobasidiaceae; Thanatephorus.
OG   Mitochondrion
XX
RN   [1]
RA   Lakshman D.K., Tavantzis S.M.;
RT   "Spontaneous appearance of genetically distinct double-stranded RNA
RT   elements in Rhizoctonia solani";
RL   Phytopathology 84:633-639(1994).
XX
RN   [2]
RP   1-3570
RX   MEDLINE; 98263373.
RA   Lakshman D.K., Jian J., Tavantzis S.M.;
RT   "A double-stranded RNA element from a hypovirulent strain of Rhizoctonia
RT   solani occurs in DNA form and is genetically related to the pentafunctional
RT   AROM protein of the shikimate pathway";
RL   Proc. Natl. Acad. Sci. U.S.A. 95(11):6425-6429(1998).
XX
RN   [3]
RP   1-3570
RA   Lakshman D.K.;
RT   ;
RL   Submitted (13-MAR-1996) to the EMBL/GenBank/DDBJ databases.
RL   Dilip K. Lakshman, University of Maine, Plant Biology and Pathology,
RL   5722-Deering Hall, Orono, ME 04469-5722, USA
XX
RN   [4]
RC   Sequence update by submitter
RP   1-3570
RA   Lakshman D.K.;
RT   ;
RL   Submitted (04-MAR-1999) to the EMBL/GenBank/DDBJ databases.
RL   Dilip K. Lakshman, University of Maine, Plant Biology and Pathology,
RL   5722-Deering Hall, Orono, ME 04469-5722, USA
XX
DR   SPTREMBL; Q9ZXZ7; Q9ZXZ7.
XX
CC   On Mar 4, 1999 this sequence version replaced gi:1469944.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .3570
FT                   /db_xref="taxon:118239"
FT                   /note="anamorph=Rhizoctonia solani; black scurf of potato"
FT                   /organelle="mitochondrion"
FT                   /organism="Thanatephorus cucumeris"
FT                   /isolate="anastomosis group 3, Rhs 1A1"
FT                   /tissue_type="mycelium"
FT   misc_RNA        1. .3570
FT                   /note="virus-like double-stranded RNA element"
FT   CDS             422. .2686
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:Q9ZXZ7"
FT                   /transl_table=4
FT                   /product="dsRNA viral RNA-dependent RNA polymerase"
FT                   /protein_id="AAD17381.1"
FT                   /translation="MLLLAYKYSSFYCNRQPACNTNMNKTNLNQKGINLLALLSTKYVE
FT                   VSKMIPLSDKIGTTLFKPLGYNNMLSHGRIGRLASGIRKTNFFISFTLNMWRTHGTTFT
FT                   IKWLKGCSVAIQKCLGKDILKSLRVLTPDLPLNGLSRGLPRIIPVEDRVKIRRGHVPTI
FT                   RFWLGLFNLYRVLKAPSELKLGTITNKFTGDRDGLRALMRFALKFNPFVEFNKLDKKSL
FT                   APTKFIMSRSASPSNKVSWFGILTDTRLLREGSPRLWENIQAYLTMVGADQFRFDLDYA
FT                   CSLADRLKSFDDKVDSQGQWIRQVSKSGQVLTQVDSMKSKDSIRGHGIGPGLGLSQFAL
FT                   KEEAAGKIRLFALMDSITQSVMSPLHDYMFAILRNIPNDGTFDQEASIARSQEKAVTAG
FT                   KAFSYDLTAATDRLPVILTAFILSTIVGIRTFGGLWRSILVKRPFGFNSNVAEKLKVSD
FT                   GPYFYEVGQPMGALSSWPGLALTHHWIVQVAAFRVTNSKSWNTEYEILGDDIVIFNELI
FT                   AQEYLNIMAVIGCEINLNKSISSRCRPVFEFAKRTCWGFAIVSGISLAQIRAGWRIGGR
FT                   VANALQFARAGLLEPGESLLQAILSRNTFSKGRVLPGYKTESVTSQKALALGVLALLGE
FT                   RFRSGIIPLRTVMHAIIDPISKNLDLKGDAIAIPIKASLHAAYQALVEGDKPQLYPFSK
FT                   EWNREPKFLENEDKLASRLLHSALNKVIILRDQYNWFIAENASEMYFPLSYLNNSSAKY
FT                   L"
XX
SQ   Sequence 3570 BP; 1052 A; 746 C; 798 G; 974 T; 0 other;

 U51331  Length: 3570  December 21, 2001 15:59  Type: N  Check: 396  ..

       1  tggggcttct gtccaattaa ggactcagct aatccacacc ctctggttaa
      51  taccagaatt cgtggagctg aagaaagatt ggatagttgc ttagggaaac
     101  gtggaggttc tattacgtga gtaatacgac ccattcactt agtacggctt
     151  gctctatccg ggtgcgattt gctagttctg aaaaggacga cacaaccctc
     201  tgagatagaa agctaatggc gaacaagtat ctactacccc gcaagggacg
     251  attagaagct tagtagcctc cgcacatcct acgggataaa acttgctgca
     301  ttagtaagag aatatttaga agcgagtagg cagaaggtta ataaaccttg
     351  ctaccttcgg gtagaaaagg aatcctgttc ggaactccag ttcaggaccc
     401  gccatcatca ttaatacggt gatgttactg cttgcctata agtattcttc
     451  tttctactgt aaccgtcagc cggcctgtaa tactaatatg aacaaaacaa
     501  acttaaacca aaaagggata aatctgttgg ctctattaag tactaagtac
     551  gtggaggttt ctaaaatgat accgctttcc gataaaatcg gaactacact
     601  attcaaacca ttgggataca ataacatgtt atctcatggt agaataggta
     651  gattggcaag tgggataaga aaaacgaatt tctttataag ctttacactg
     701  aacatgtgga gaacacacgg gacaaccttt accataaaat ggttgaaagg
     751  atgctccgtg gctatccaaa aatgtctagg taaagatata ttgaaatctc
     801  taagagtctt gacaccagat cttcctttga atgggttgtc acgtggactt
     851  ccaagaatta tacctgttga agacagagta aaaattcgaa gaggacacgt
     901  accaacaatc cgattctggc tcgggttatt taacctttac cgggtgctaa
     951  aagcgcccag cgagctgaaa ttgggaacca ttactaataa atttactggg
    1001  gatagagatg ggttacgagc tttgatgcga tttgcattga agttcaaccc
    1051  tttcgtcgaa tttaataaat tagacaaaaa gtctctagct cccactaagt
    1101  ttattatgtc tagatcggct tcgccgtcta acaaagtgtc ttggtttggg
    1151  atcttaacag atacccgact tcttagagaa ggatctccca gattatggga
    1201  aaacatccaa gcttacctaa ccatggtagg ggcagaccag ttcagatttg
    1251  atctggatta tgcttgctct cttgcagatc gacttaaatc atttgatgat
    1301  aaagttgatt cgcagggtca atggataaga caagtctcga aatcgggaca
    1351  agttcttact caagttgact caatgaaatc gaaagattcc attagaggtc
    1401  atggtattgg tcctggactt ggtctttcgc aatttgcgct caaagaagaa
    1451  gctgctggaa aaatccggct cttcgctttg atggattcaa taacacaaag
    1501  tgttatgagt cctctccatg attacatgtt tgccatctta aggaatattc
    1551  ctaacgatgg gacatttgat caagaggcat caattgctag atcccaagaa
    1601  aaggccgtta ccgcgggcaa ggcattcagt tatgatctga ctgctgctac
    1651  ggatcgacta cctgtaatcc ttactgcgtt catactctcc acaatcgtgg
    1701  ggattagaac gtttgggggt ctttggaggt caattttggt caaaagacct
    1751  tttggtttca acagcaatgt tgctgagaaa ttgaaagtct ctgacggtcc
    1801  gtacttctac gaggtagggc aacctatggg tgctctatct tcttggcccg
    1851  gtcttgcctt aacgcatcac tggattgtcc aagttgccgc ttttagagtt
    1901  acaaattcta agagttggaa caccgagtat gaaatacttg gtgatgatat
    1951  cgtaatattc aatgaactta tcgctcaaga atatctaaat atcatggctg
    2001  taatcgggtg tgagattaat ttaaataaat caatctcctc ccgatgccgt
    2051  cccgttttcg aattcgcaaa acgaacctgt tggggctttg caatagtaag
    2101  tggaatctcc ctcgctcaaa taagagcggg ttggagaatc gggggtcgtg
    2151  tagctaatgc tctgcaattt gcaagagcag gactactaga acccggtgaa
    2201  tccctgttgc aagctatcct ttctagaaat accttttcaa aaggtagagt
    2251  attgccaggt tacaagacgg agtcagtaac ctcacaaaag gctctagcct
    2301  taggggtact ggcgttgtta ggggagagat tccgatctgg aatcatcccg
    2351  ctaagaacgg taatgcacgc gatcatagat cctatttcta agaatctaga
    2401  tctgaaaggg gatgctatcg ctatccctat caaagcgtca ttacatgcag
    2451  cttaccaggc attggtggaa ggagataaac ctcagctcta cccattctca
    2501  aaagaatgga atagagagcc aaagttcctc gagaatgaag acaaactggc
    2551  gagccggttg cttcattccg cacttaataa agtgatcata ctccgagacc
    2601  aatacaattg gtttatcgcg gaaaacgcgt cggagatgta ctttccctta
    2651  agttatttaa ataactcaag tgcgaagtac ctctaaacga tctaccaggg
    2701  ccatacttag ccctagtgac cgagattgag caattcttcg aaatgctaat
    2751  cggtttagag atgaactgga cagatagtcc agaggctata taccaagacc
    2801  tatatatgga aatggatgcc acactttatt atgaggaggc ccttgagctt
    2851  cacgaaaggg ttgataaact cgagtttaaa cttaaacctt atgaaggtaa
    2901  agtcaaaccc gggcggaccg tccacgagac tgcaccaata cttactgctt
    2951  tacgcggtat tcttggtacg agtcttcgta gatggaacaa ccctcctaac
    3001  ccatcaacta ttagtacatt gatgcgttag gcgtggcagg attctcccgc
    3051  ctgtttaatc agatgaaagg ctcctcaata gagagaccga cccctagggg
    3101  acgactctac gatgaagatt ctctattatc tacttcttga cacttcgagc
    3151  agtctttgtt aagtttatta acaataaaaa ccatgccctt aggtccgggt
    3201  gaaataccgg gaaaccatgg gggatagttc ttatcaaaga actccaagaa
    3251  acggaagaag tgataaagtg atccaactcg cataaaatct atgcgcatcg
    3301  gcctgaccaa gggcactggg tgttatacca ggtaacttgg aaggggaccg
    3351  acggtgtgga aacctttcta tccgattcat cgggtggact tcttattttt
    3401  acaaaccaga gtggttcact gaagaaccct tctcggctta gtactaacga
    3451  ggcttctctt tacagattag cgcagttagg actaatgtcc gatcttaacc
    3501  tccataaaag gagacttcgg tcttcgggtt tggatttggt taggcggaat
    3551  ttctttccgc cagaagcccc