Sequence of DPV Tobacco necrosis virus D
Tobacco necrosis virus strain D, complete genome.
ACC No: U62546
Dated: 2002-03-21 | Length: 3762 | CRC: -591511566
!!NA_SEQUENCE 1.0
ID TNU62546 standard; genomic RNA; VRL; 3762 BP.
XX
AC U62546;
XX
SV U62546.1
XX
DT 04-JUL-1997 (Rel. 52, Created)
DT 21-MAR-2002 (Rel. 71, Last updated, Version 3)
XX
DE Tobacco necrosis virus strain D, complete genome.
XX
KW .
XX
OS Tobacco necrosis virus D
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Necrovirus.
XX
RN [1]
RP 1-3762
RX MEDLINE; 97335247.
RX PUBMED; 9191913.
RA Molnar A., Havelda Z., Dalmay T., Szutorisz H., Burgyan J.;
RT "Complete nucleotide sequence of tobacco necrosis virus strain DH and genes
RT required for RNA replication and virus movement";
RL J. Gen. Virol. 78(Pt 6):1235-1239(1997).
XX
RN [2]
RP 1-3762
RA Molnar A.;
RT ;
RL Submitted (27-JUN-1996) to the EMBL/GenBank/DDBJ databases.
RL Attila Molnar, Agricultural Biotechnology Center, Institute for Plant
RL Sciences, 4. Szent-Gyorgyi, Godollo, H-2101, Hungary
XX
DR GOA; O41347.
DR GOA; O41351.
DR SPTREMBL; O41346; O41346.
DR SPTREMBL; O41347; O41347.
DR SPTREMBL; O41348; O41348.
DR SPTREMBL; O41349; O41349.
DR SPTREMBL; O41350; O41350.
DR SPTREMBL; O41351; O41351.
XX
FH Key Location/Qualifiers
FH
FT source 1. .3762
FT /db_xref="taxon:12056"
FT /mol_type="genomic RNA"
FT /organism="Tobacco necrosis virus D"
FT /strain="D"
FT /isolate="Hungarian"
FT /clone="A-172"
FT CDS 39. .647
FT /codon_start=1
FT /db_xref="SPTREMBL:O41346"
FT /note="TNV-DH ORF1"
FT /product="22 kDa protein"
FT /protein_id="AAC57947.1"
FT /translation="MESLPVVLLSLISKTIVLLCSFLTLIIQNSTAVSWACICIWLCYV
FT AFRYVFKIKVTIHPAAVETFETMVRKFQAESMFAEETIPCMASVGDKDADLTPDPQRED
FT IKIVKSSRRVSYPVRVAHVAKAQVGLLPNSRANELVYSRLCREEMVKHGVRPSHIAHMV
FT PLAVAACFIPLDSDFLAASIRQGDGMRERRALIGASWEK"
FT CDS 39. .2216
FT /codon_start=1
FT /db_xref="GOA:O41347"
FT /db_xref="SPTREMBL:O41347"
FT /note="TNV-DH ORF2; readthrough stop codon"
FT /transl_except=(pos:645. .647,aa:OTHER)
FT /function="RNA dependent RNA polymerase"
FT /product="82 kDa protein"
FT /protein_id="AAC57946.1"
FT /translation="MESLPVVLLSLISKTIVLLCSFLTLIIQNSTAVSWACICIWLCYV
FT AFRYVFKIKVTIHPAAVETFETMVRKFQAESMFAEETIPCMASVGDKDADLTPDPQRED
FT IKIVKSSRRVSYPVRVAHVAKAQVGLLPNSRANELVYSRLCREEMVKHGVRPSHIAHMV
FT PLAVAACFIPLDSDFLAASIRQGDGMRERRALIGASWEKXGGLLVTSGFTTPTWRGDPR
FT GMLVTKGPPLAKPRKLYRFTGMGTHIRYGVHDHSLGNVRRGLVERLYMVEVKGELKPTP
FT KPTPGAFGQLSRFNRKLGVHLPKTTRLTPKEFLGFYTGRKLERYQRAVESLEMHPVREK
FT DAWLSTFVKAEKLNITAKPDPAPRVIQPRDPRYNVEVGRYLRHSEEMLFKAINKTFGGR
FT TIFKGLSSDQAGVEMKELWDSFKDPVGIGMDASRFDQHISKDALEFEHKMWLSMFPVSE
FT RKELARLLSWQINNRGLARCPDGEIRYRVEGCRMSGDMNTSSGNCYIMCATVHNWCSEV
FT KKLKHFRLANNGDDCMLVVERCDEESVREGLIEYYTTLGFTMKVEPTVDVLERVEFCQT
FT RPVLVNGAYRMVRNLHQSMSKDLHSLHDLGSRVSREAWVTAVGTGGRCMNDGVPVLKEF
FT FKQFPDYNLGLKKNSDMAQKLTEDWRYKFNRTSAFQDVTPSQETRYSFWLAFGILPDEQ
FT IALENGFSPLRVDIIDEQIQEEVSLLQFSGA"
FT CDS 2213. .2401
FT /codon_start=1
FT /db_xref="SPTREMBL:O41348"
FT /note="TNV-DH ORF3"
FT /product="7 kDa protein"
FT /protein_id="AAC57948.1"
FT /translation="MKTHQFHLKIESRWKILKMSVVVGKTESIVGIGSRRAAIRKLARL
FT PCVKRVTLSKIWVHQCL"
FT CDS 2251. .2448
FT /codon_start=1
FT /db_xref="SPTREMBL:O41349"
FT /note="TNV-DH ORF4"
FT /product="7 kDa protein"
FT /protein_id="AAC57949.1"
FT /translation="MENSENVRSGRQNREYSRDRQQEGGYKEISKAAVRKEGDVKQDMG
FT PSVSMTVVGEKVEFTQHFHF"
FT CDS 2448. .2648
FT /codon_start=1
FT /db_xref="SPTREMBL:O41350"
FT /note="TNV-DH ORF5"
FT /product="7 kDa protein"
FT /protein_id="AAC57951.1"
FT /translation="MKYIIVQQNDPLPLLGVWIIVIIIIAVIGLLNQSPPERPYQTFKE
FT DNSKIQYITIGGPTTTKVSTN"
FT CDS 2651. .3457
FT /codon_start=1
FT /db_xref="GOA:O41351"
FT /db_xref="SPTREMBL:O41351"
FT /note="TNV-DH ORF6"
FT /product="29 kDa coat protein"
FT /protein_id="AAC57950.1"
FT /translation="MPKRGRVGLAESFQSKSKKQKEAEYNAFQREKMERALVNNATAAR
FT KGSGMSFRPLTVPVAGSVIYSRPRVPQVRTNQMSTFVVNTELVANITLAAAGAFSFTTQ
FT PLIPSFGSWLANIADLYSKWRWISCSVVYIPKCPTSTQGSVVMAIVYDAQDTVPTTRTQ
FT VSQCYQSITFPPYAGYGGASALNHKGSSGESLVSTLDTNRVDKKWYSTIGNAAFTALTS
FT IDKNQFCPATAIIAGDGGPVAATAVGDIFMRYEIEFIEPVNPTINI"
XX
SQ Sequence 3762 BP; 1007 A; 826 C; 950 G; 978 T; 1 other;
U62546 Length: 3762 January 7, 2004 15:38 Type: N Check: 9464 ..
1 nataccttac cagtatctca gtgattaagt aatcagctat ggaatcctta
51 ccagtcgttc ttctttccct aatctctaaa acgattgtgc tactctgtag
101 tttcttgacc cttataatcc aaaattccac cgctgtttct tgggcatgca
151 tatgcatctg gctttgttac gtagctttcc gttacgtatt caaaatcaaa
201 gttaccatcc atcccgctgc agttgaaacg ttcgagacaa tggttcgcaa
251 atttcaggct gaatcaatgt tcgctgagga aaccattcca tgcatggcaa
301 gtgtaggtga caaggacgct gatctcaccc ccgacccaca aagagaggat
351 ataaaaattg tgaagtcgtc gaggagagtg agttaccccg tccgtgtagc
401 acatgtagct aaggcacagg tgggcctctt acccaactct agagccaacg
451 agctagtgta ctctcgtctc tgcagggagg agatggtcaa acatggggtt
501 cgaccaagtc atattgccca catggttcca ttggcggtgg cggcatgctt
551 catcccgttg gatagcgact ttttagccgc ttccatcaga cagggtgatg
601 gcatgcggga gaggagggcc cttattgggg cctcatggga gaaataggga
651 ggcctattag tcacaagcgg attcaccact cctacttgga gaggtgatcc
701 gaggggtatg cttgtgacta aaggacctcc cctcgcaaaa ccccgtaaat
751 tgtaccgatt tactgggatg ggaacacata ttcggtacgg agtgcatgat
801 cactcattgg gcaatgttcg gcggggacta gtggaacgat tatatatggt
851 tgaagttaaa ggagaactta aacctactcc aaagcccacc cccggagcgt
901 tcggccaact gtcccggttc aaccgcaaac ttggtgttca tcttcctaag
951 accacccgat tgacacccaa ggaattcctt gggttttata cgggtcgcaa
1001 gttagagaga taccaaagag cagttgagtc gttagagatg catcccgtaa
1051 gggaaaagga tgcttggctt agcacgttcg tgaaggctga aaaactgaat
1101 atcacagcca aacccgaccc agctccacgg gtgatacaac cgagggatcc
1151 tcggtataat gtggaggttg ggcgctattt gcgacatagt gaggaaatgt
1201 tgttcaaggc cattaataaa acatttggcg gtaggactat tttcaaggga
1251 ctcagctctg atcaagctgg tgtcgagatg aaggaactct gggattcatt
1301 caaggatcca gtgggcatag ggatggatgc ctcgaggttt gaccagcaca
1351 tctccaagga tgccttggag tttgaacata agatgtggct aagcatgttc
1401 cctgtttccg aaaggaagga acttgccagg ctgcttagct ggcaaatcaa
1451 taatcgaggc cttgcccgat gtccagatgg ggagattaga tacagagttg
1501 agggatgcag gatgtctggt gacatgaata cctctagcgg taactgctac
1551 atcatgtgtg caactgtgca taattggtgt agtgaggtta agaaactcaa
1601 gcattttcga ttagccaata atggtgatga ttgtatgctt gttgttgaac
1651 gctgtgatga ggagtctgtc cgagagggct taattgagta ctacaccaca
1701 cttgggttca ctatgaaggt ggagcctaca gtggatgtgt tggaaagagt
1751 tgagttctgt cagactaggc ctgttctggt gaatggagct taccgaatgg
1801 ttcgcaacct tcatcagagc atgtcgaaag atctgcactc ccttcatgac
1851 cttggaagtc gtgtatccag agaggcctgg gtaacagccg taggaacagg
1901 aggccgatgt atgaatgatg gggtgcctgt gttaaaagaa ttctttaagc
1951 aattcccaga ttataacttg gggttaaaga agaattccga tatggcacag
2001 aaattgacag aggactggag gtacaagttt aatcggacaa gtgcctttca
2051 ggatgtcaca ccctcccagg aaactcggta ctccttttgg ctagcctttg
2101 ggatactacc tgatgaacaa attgccctgg agaatggctt cagccccttg
2151 agggttgata tcatagatga gcagatccag gaggaggttt ccctcctcca
2201 gttctctggg gcatgaaaac tcaccaattt caccttaaga tcgagtctag
2251 atggaaaatt ctgaaaatgt ccgtagtggt cggcaaaacc gagagtatag
2301 tagggatagg cagcaggagg gcggctataa ggaaattagc aaggctgccg
2351 tgcgtaaaga gggtgacgtt aagcaagata tgggtccatc agtgtctatg
2401 actgtagttg gggagaaagt tgaattcacc cagcactttc atttctgatg
2451 aaatacataa ttgttcagca gaatgatcct ttaccccttt tgggggtttg
2501 gatcatagtc atcataatta ttgcagttat tggtttattg aaccaaagcc
2551 ctcctgaaag accttaccaa actttcaaag aagataattc taagatacaa
2601 tacattacta tcggcggacc cactactaca aaagtgtcaa caaattaata
2651 atgcctaaac gaggaagagt tggcctggct gaatcttttc agtccaagtc
2701 aaagaagcag aaggaggctg agtacaatgc ctttcaaagg gagaaaatgg
2751 aacgcgcact tgtcaacaat gcgaccgcag cgagaaaggg ctctggaatg
2801 tctttcagac cactcactgt ccctgttgct gggtcagtta tatatagcag
2851 accccgagtg cctcaggttc gcaccaatca gatgtccacc ttcgtggtca
2901 atactgaatt ggtagccaat attactcttg ctgctgctgg agctttcagc
2951 ttcacaacac agccattgat acccagcttt ggatcttggt tggcaaacat
3001 tgctgatctt tactctaagt ggagatggat tagttgttct gtggtataca
3051 tccccaaatg tcccacttcc actcaaggga gtgtggttat ggcaattgtg
3101 tacgatgcac aggacactgt acccaccact cggacccagg tctcacaatg
3151 ttaccagtcc atcactttcc caccgtatgc tggatatggt ggagcctctg
3201 cactgaacca caagggttct agtggtgaat cgttggtgtc tactcttgac
3251 accaatagag tggataagaa atggtacagc accattggta acgcagcctt
3301 tactgctctc acatcaatag ataagaatca gttctgtcca gccacagcaa
3351 tcattgctgg ggatggtgga cctgttgccg ctactgctgt gggtgatatc
3401 tttatgcgct acgagattga gttcattgaa ccagtcaatc ccaccattaa
3451 catttagtcg ctttcataga tccgtcttcc cagagacgtt aagaagaagc
3501 tggagaaaaa tattaggtta gaagcttggg cgtgacaaac ccaagttgca
3551 tctcttacgt ggttaatcac actgtatgtt gacgaatagg ccggatcctg
3601 ggaaacaggt ttaacgggct ctctgtggtg gagggccgac gcatcaccta
3651 tttgtgctcc aacagtggtt gtcatcacgt gtcctgacat ggctccatgc
3701 gacagcatgg gggggtccag agtcagtccc ctctttattt acctaggatt
3751 tcctaggaac cc