Sequence of DPV Glycine max Tgmr virus
Glycine max copia-like retrotransposon Tgmr, complete sequence.
ACC No: U96748
Dated: 2000-03-04 | Length: 4975 | CRC: -454188696
!!NA_SEQUENCE 1.0
ID GMU96748 standard; genomic DNA; PLN; 4975 BP.
XX
AC U96748;
XX
SV U96748.1
XX
DT 23-MAY-1997 (Rel. 52, Created)
DT 04-MAR-2000 (Rel. 63, Last updated, Version 3)
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DE Glycine max copia-like retrotransposon Tgmr, complete sequence.
XX
KW .
XX
OS Glycine max (soybean)
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids;
OC eurosids I; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine.
XX
RN [1]
RP 1-4975
RX DOI; 10.1023/A:1005851623493.
RX MEDLINE; 97351559.
RX PUBMED; 9207841.
RA Bhattacharyya M.K., Gonzales R.A., Kraft M., Buzzell R.I.;
RT "A copia-like retrotransposon Tgmr closely linked to the Rps1-k allele that
RT confers race-specific resistance of soybean to Phytophthora sojae";
RL Plant Mol. Biol. 34(2):255-264(1997).
XX
RN [2]
RP 1-4975
RA Bhattacharyya M.K., Gonzales R.A., Kraft M., Buzzell R.I.;
RT ;
RL Submitted (08-APR-1997) to the EMBL/GenBank/DDBJ databases.
RL Plant Biology, The Samuel Roberts Noble Foundation, 2510 Sam Noble Parkway,
RL Ardmore, OK 73401, USA
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FH Key Location/Qualifiers
FH
FT source 1. .4975
FT /db_xref="taxon:3847"
FT /mol_type="genomic DNA"
FT /organism="Glycine max"
FT source 6. .4970
FT /db_xref="taxon:3847"
FT /mol_type="genomic DNA"
FT /note="copia-like retrotransposon Tgmr"
FT /organism="Glycine max"
FT repeat_region 1. .5
FT /note="duplicated target site"
FT /rpt_type=DIRECT
FT LTR 6. .264
FT repeat_region 6. .10
FT /note="imperfect LTR terminal repeat"
FT /rpt_type=DIRECT
FT repeat_region 260. .264
FT /note="imperfect LTR terminal repeat"
FT /rpt_type=DIRECT
FT misc_feature 4713. .4721
FT /note="polypurine tract"
FT LTR 4723. .4970
FT repeat_region 4723. .4727
FT /note="imperfect LTR terminal repeat"
FT /rpt_type=DIRECT
FT repeat_region 4966. .4970
FT /note="imperfect LTR terminal repeat"
FT /rpt_type=DIRECT
FT repeat_region 4971. .4975
FT /note="duplicated target site"
FT /rpt_type=DIRECT
XX
SQ Sequence 4975 BP; 1458 A; 1218 C; 826 G; 1473 T; 0 other;
U96748 Length: 4975 May 9, 2005 17:26 Type: N Check: 4684 ..
1 tagggtctta gtcgaagctt attaatcagt tagaaatctg tttagtagtt
51 agttagttag ttaaaagatg ttagagttag tttcctaaat gtaactgact
101 aaactactca aagcgcttct ctttcctcag caactctgca aagatataaa
151 tgcataataa atgcaacaat aaaaaaaagc tctcatgcag tatttggtca
201 tcttcacgtg ttttacgtag cttactacat tttctctctc tatggcacaa
251 tatgcttatt aatatggtat cagagctctt cttgtgaaga gttctgttgt
301 gccaccgtct ttacgctcac gagtttgcct ttttcatcgt tttctcacca
351 tgaactagtt actactaaac tcaaaaagct atctctatct ccacccaagt
401 gagaacccag ctgttgcact agtttctcca gctttagatt ccagcaatta
451 ccattcatgg agtaggtaca tgataacggc attgagcgcc aagaacaaag
501 tagaattcgt aaacggaaaa gcacccgagc cattgaagtc tgatagaact
551 tacggggcat ggcgtcgctg caacaacatg gtggtatcct ggttagttca
601 ttcagtatcc atctccatta gacaaagtgt cttgtggatg gacaaagcgg
651 aagaaatttg gaatgacttg aaatctcgat acgcacaagg ggaccttttg
701 agagtttctg aactccaaca agaagcttca tccatcaagc aaggatctct
751 ttctattacg gagtatttta caaagctgcg agtcatatgg gacgagatcg
801 aaaacttcat acctgatccc atatgttcat gcactgtcaa gtgtacttgc
851 ttagtactca ccaccatagc tcaacgaaag cgagaagacc gagctatgca
901 gttcctgcaa gggttgaacg aacagtatag caatatatgt tctcatgtgt
951 tgctcatgga cccaataccc acaataccga aaatcttctc gtacgtggca
1001 cagcaggaaa gacaacttac aggtaacaac tctttatcaa gctttaatct
1051 cgaaactaaa gagggacctt ccattaacgc tgtcaaaagt gtttgtgaat
1101 tcggtggacg cattgaccat aatgaaagcg tttgttataa gaagcacgga
1151 ctacctcaga attacgatgg gaaagggaaa agatacaaca caagaaagac
1201 atgtgcctac tgcagaaaac ttggacacac aattgatgtt tgctacaaga
1251 aacaagggta tcccccagga ttcaaattca acaatggcaa agcaatagct
1301 aacaatgtag tggcagtaga aggaaaagcc acagatgacc agatactacc
1351 ccaagaatct caagaactgg tttgtttctc accggagcaa tacaaggcac
1401 tgctagcttt aatacaacag ccatcggccg gaaactcagc acccatcaag
1451 ccataggtcg cctttatttc atcttgttcc aataacgatg caacaggtat
1501 aattctatct tgcgaaaaag ccaattctac ctcctggatc ttagattcag
1551 gagccactga tcatgtttcc tcctctctaa caaattttca ctcatatcat
1601 caaattaatc ccatcacagt taaactacca aatggtcatc ttgtctatgc
1651 tacccactca ggcacaatac aactttctgc attcattaca ctaaatgatg
1701 tcttatacgt gccatctttt actttcaact taatatccat atcaaagctt
1751 gtgtcttcta ctaattgcaa attaatattt tcatcaaata tttgtattct
1801 acaggatacc aataccaagg tgaggattgg tacagctgaa gtgagtcgcg
1851 gtctctatca attcaccccc gaagcataaa aaacacacac catatgttcc
1901 actattacac acccaaaatg taaagtcctt cctataaatc tgtggcactt
1951 tcgtatgggc catccttccc tcgaaagatt acaagccatg cagtcctatt
2001 atccgttttt gaacaacaac aaaaacttca tatgtaatac atgtcattat
2051 gcaaagcata agagattact tttctcttct agcacctttc atgcatcaaa
2101 caaatttgag cttttacata ttgatatttg ggggccatgc tccataacaa
2151 ccctttatgg gcaccgatat ttcttaacca tcatagatga cttctcccga
2201 tatacatgga ctcatctcat gcacacaaaa gccgaaacac gtaaaatcat
2251 tactgatttc attgcatatg ttgaaactca atttgatagt aaagttaaaa
2301 ttctacaaag cgataatgga gctgaatttc tcatgcatga tttctatgct
2351 cgaaagggta taatccatca aactacttgt gtcgaaacgc ctgagcaaaa
2401 tggcattgcc gagagaaagc atcaacatct cttgaatgtc acacgagcac
2451 tcttatatca agcacaactt ccactaaatt tctggtgttt tgcattgctt
2501 catgctgcat acctcataag tcgtatacct accccttttt tgaaagatat
2551 atctccttat gaaaaattat atgtgcaacc ctgcgatatc tctaatctcc
2601 gtgtttttgg gtgcttatgt tacgttagta cccttcagaa tcatcgacaa
2651 aaacttgatc ctcgagctca tccttgcata tttcttggtt gtaaaccaca
2701 tacaaaaggg tatctcgttt ataatctcca ttctcataac ataactgctt
2751 ctcgtaatat tgttttttta tgaggatcac tttccaatat tacatgaaac
2801 ccaacacttc gataataccg atacgcatat ctcgtcaatt cccttctcta
2851 gcaacaccca aattcctgac actatgatga cacacacagc caacccaaac
2901 aatcctaccc acctcacgat acctcctgcc aactccccta cttcttctac
2951 tcaggacaac tcatcttcct cacctccttg gacacccagc ttacgtcgtt
3001 ctacgagaac gagacatcca cccacatact tacaggactt tcatcgcgtt
3051 ctcacttcac atgctgatac ctcctcgacc aaggttaagt accctctcca
3101 ctttgtctta tcttattctc atttgtctca ttcccataaa cacttcatca
3151 tgtctataac cgcgatagct aaacccaatt catatgctga ggcttctagc
3201 tatgactgtt ggattaaagc catgcaggtc gagttaaagg ctcttcaaca
3251 gaaccacact tggattctaa ctccacttcc cccacacaaa aaggccattg
3301 gatgtcgctg ggtttacaaa gtcaagcaca atgcggatgg aaccattgaa
3351 agatacaaag cgtgactagt agccaaagga tacactcaac aggaaggttt
3401 ggattttctc gatacttttt cccccgtggc caagctcacc actgttcaaa
3451 tgcttctagc ccttgctgct ctttgtaact ggcaccttag acaactcgac
3501 gtcaacaatg cttttcttca tggggatctt aacgaagaag tttatatgaa
3551 gcttccacca ggactggttg tggataaccc caacctcatt tgtcaccttc
3601 aacgttcctt atatggactt aaacaagcaa gtcggaaatg gttcacacgg
3651 ctttcgtcat tccttttctc ccaaggcttt cgtcaatctt cagttgacca
3701 ctcacttttc ttatactcta acaatgataa tactgtaaca gctattcttg
3751 tttatgttga cgacatcatc ttggcaggag ataacctcaa gtctatcact
3801 cactttacca agtttctcga tcaaactttc agcattaagg atctcggtat
3851 tctgaagttc ttcctcggac tcgaggttgc tcgttcaagt cacggcatac
3901 acttatgtca gggtaaatat gccctggata ttctatcaga ttcaggtatg
3951 cttggttccc gtcctacctc tactcccatg gattactcta cacgtttgag
4001 tgcttccatg ggaacgccat tgtcagaaac ttctgcttct tcctacagat
4051 gattaatcga tcgcctcata tatcttacga acacccgacc caatattact
4101 catgcagttc aacaactaag tcaatatatg gccaatccca cttctacaca
4151 ctctcaggct actttttgaa tcttacgcta cctcaaagga tctcctggtt
4201 cgggcatatt ctttgctgct cacagtacac tcactctcaa ggcattcagt
4251 gactccgatt ggacaggctg tcgcgacaca cgatgctcca tcactggctt
4301 ctcagtttat ctgggtgatt atctcatttc ctggcgatcc aagaagcaat
4351 ctacagtctc tcgcagctcc tctgaggcag agtatcgagc cttggcctcc
4401 actacatgtg aacttcaatg gctaagctac cttcttcacg atttttgggt
4451 cccttttctt caacctgcca cactctattg tgacaatcaa tccgctattc
4501 aaatagcttc aaacccagtt ttccacgaac gtactaaaca catcgagatc
4551 gactgccata tcgtgcgaga caaagtgaac gcaggcttgt taaaacttct
4601 tccagtttct tcttcaatgc agcttgccga catcttcaca aagcctctca
4651 cccctgctat ttttcaaggt ttatgttcca agctgggaat gatgaacatc
4701 cattcccagc ttgagggggg gctcttagca gaagcttatt aatcagttag
4751 aaatctgttt agtagttagt tagttagtta aaagatgtta gagttagttt
4801 cctaaatgta actgactaaa ctactcaaag cgcttctctt tcctctgcaa
4851 ctctgcaaag atataaatgc aacaataaaa aaaagctctc atgcagtatt
4901 tggtcatctt cacgtgtttt acgtatctta ctacattttc tctctctatg
4951 gcacaatacg cttattaata taggg