Sequence of DPV Potato virus X
Potato virus X genome
ACC No: X05198
Dated: 1993-10-13 | Length: 6435 | CRC: 1671685059
!!NA_SEQUENCE 1.0 ID POPVX3 standard; RNA; VRL; 6435 BP. XX AC X05198; M37458; XX SV X05198.1 XX DT 29-NOV-1987 (Rel. 14, Created) DT 13-OCT-1993 (Rel. 37, Last updated, Version 7) XX DE Potato virus X genome XX KW capsid protein; nonstructural protein; unidentified reading frame. XX OS Potato virus X OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potexvirus. XX RN [1] RP 1-6435 RA Atabekov J.G.; RT ; RL Submitted (26-SEP-1988) to the EMBL/GenBank/DDBJ databases. RL Atabekov J.G., A.N. Belozersky Laboratory of Molecular Biology and RL Bioorganic Chemistry, Moscow State University, Moscow 119899, USSR. XX RN [2] RX MEDLINE; 89083520. RA Skryabin K.G., Kraev A.S., Morozov S.Y., Rozanov M.N., Chernov B.K., RA Lukasheva L.I., Atabekov J.G.; RT "The nucleotide sequence of potato virus X RNA"; RL Nucleic Acids Res. 16:10929-10930(1988). XX RN [3] RA Morozov S.Y., Lukasheva L.I., Chernov B.K., Skryabin K.G., Atabekov J.G.; RT "Nucleotide sequence ot he open reading frames adjacent to the coat protein RT cistron in potato virus X genome"; RL FEBS Lett. 213:438-442(1987). XX DR SWISS-PROT; P07697; VMEM_PVX. DR SWISS-PROT; P07698; V07K_PVX. DR SWISS-PROT; P07699; COAT_PVX. DR SWISS-PROT; P09395; RRPO_PVX. DR SWISS-PROT; P09396; VHEL_PVX. XX CC Data kindly reviewed (07-MAR-1989) by Atabekov J.G. XX FH Key Location/Qualifiers FH FT source 1. .6435 FT /db_xref="taxon:12183" FT /organism="Potato virus X" FT CDS 85. .4455 FT /db_xref="SWISS-PROT:P09395" FT /product="RNA-replicating protein" FT /protein_id="CAA28826.1" FT /translation="MAKVREVYQSFTDSTTKTLIQDEAYRNIRPIMEKHKLANPYAQTV FT EAANDLEGFGIATNPYSIELHTHAAAKTIENKLLEVLGSILPQEPVTFMFLKPRKLNYM FT RRNPRIKDIFHNVAIEPRDVARYPKETIIDKLTEITTDTAYIGDTLHFLDPSYIVETFQ FT NCPKLQTLYATLVLPVEAAFKMESTHPNIYSLKYFGDGFQYIPGNHGGGAYHHEFSHLQ FT WLKVGKIKWRDPKDSFLGHLNYTTEQVEMHTVTVQLQESFAANHLYCIRRGDLLTPEVR FT TFGQPDRYVIPPQIFLPKVHNCKKPILKKTMMQLFLYVRTVKVAKNCDIFAKVRQLIKS FT SDLDKYSAVELVYLVSYMEFLADLQATTCFSDTLSGGLLTKTLAPVRAWIQEKKMQLFG FT LEDYAKLVKAVDFHPVDFSFKVETWDFRFHPLQAWKAFRPREVSDVEEMENLFSDGDLL FT DCFTRMPAYAVNAEEDLAAIRKTPEMDAGQEVKEPAGDRNQYSNPAETFLSKLHRKHSR FT EVKHQAAKKAKRLAEIQESMRAEGEAESNEMSGGMGAIPSNAELPSTSGARQELTLPTT FT KPVPARWEDASFTDSSVEEEQVKLPGKEAVETATQQVIEGLPWKHWIPQLNAVGFKALE FT IQRDRSGTMIMPITEMVSGLEKEDFPEGTPKELARELLAMNRSPATIPLDLLRARDYGS FT DVKNKRIGAITKTQAASWGEYLTGKIESLTERKVAACVIHGAGGSGKSHAIQKALREIG FT KGSDITVVLPTNELRLDWSKKVPNTEPYMFKTYEKALIGGTGSIVIFDDYSKLPPGYIE FT ALICFYSKIKLVILTGDSRQSVYHETAEDASIRHLGPATEYFSKYCRYYLNATHRNKKD FT LANMLGVYSERTGVTEISMSAEFLEGIPTLVPSDEKRRLYMGTGRNDTFTYAGCQGLTK FT PKVQIVLDHNTQVCSANVMYTALSRATDRIHFVNTSANSSAFWEKLDSTPYLKTFLSVV FT REQALKEYEPAEAEPIREPEPQTHMCVENEESVLEEYKEELLEKFDREIHSESHGHSNC FT VQTEDTTIQLFSHQQAKDETLLWATIDARLKTSNQETNFREFLSKKDIGDVLFLNYQKA FT MGLPKERIPFSQEVWEACAHEVQSKYLSKSKCNLINGTVRQSPDFDENKIMVFLKSQWV FT TKVEKLGLPKIKPGQTIAAFYQQTVMLFGTMARYMRWFRQAFQPKEVFINCETTPEDMS FT AWALNNWNFSRPSLANDYTAFDQSQDGAMLQFEVLKAKHHCIPEEIIQAYIDIKTNAHI FT FLGTLSIMRLTGEGPTFDANTECNIAYTHTKFDIPAGTAQVYAGDDSALDCVPEVKHSF FT HRLEDKLLLKSKPVITQQKKGSWPEFCGWLITPKGVMKDPIKLHVSLKLAEAKGELKKC FT QDSYEIDLSYAYDHKDSLHDLFDEKQCQAHTLTCRTLIKSGRGTVSLPRLRNFL" FT CDS 4486. .5166 FT /db_xref="SWISS-PROT:P09396" FT /product="put. NTP-binding helicase" FT /protein_id="CAA28827.1" FT /translation="MDILIISLKSLGYSRTHKSLDSGPLVVHAVAGAGKSTALRKLILR FT HPTFTVHTLGVPDKVSIRTRGIQKPGPIPEGNFAILDEYTLDNTTRNSYQALFADPYQA FT PEFSLEPHFYLETSFRVPRKVADLIAGCGFDFETNSQEEGHLEITGIFKGPLLGKVIAI FT DEESETTLSKHGVEFVKPCQVTGLEFKVVTVVSAAPIEEIGQSTAFYNAITRSKGLTYV FT RAGT" FT CDS 5147. .5494 FT /db_xref="SWISS-PROT:P07697" FT /product="12 kD membrane-bound protein" FT /protein_id="CAA28828.1" FT /translation="MSAQGHRLTAPVNSEKVYIVLGLSFALVSITFLLSRNSLPHVGDN FT IHSLPHGGAYRDGTKAILYNSPNLGSRVSLHNGKNAAFAAVLLLTLLIYGSKYISQRNH FT TCACGNNHSSH" FT CDS 5427. .5639 FT /db_xref="SWISS-PROT:P07698" FT /product="8 kD membrane-bound protein" FT /protein_id="CAA28829.1" FT /translation="MEANTYLNAIILVLVVTIIAVISTSLVRTEPCVIKITGESITVLA FT CKLDAETIRAIADLKPLSVERLSFH" FT mRNA 5645. .6435 FT /note="coat protein mRNA" FT CDS 5650. .6363 FT /db_xref="SWISS-PROT:P07699" FT /product="capsid protein" FT /protein_id="CAA28830.1" FT /translation="MSAPASTTQATGSTTSTTTKTAGATPATASGLFTIPDGDFFSTAR FT AVVASDAVATNEDLSEIEAVWKDMKVPTDTMAQAAWDLVRHCADVGSSAQTEMIDTGPY FT SNGISRARLAAAIKEVCTLRQFCMKYAPVVWNWMLTNNSPPANWQAQGFKPEHKFAAFD FT FFNGVTNPAAIMPKEGLIRPPSEAEMNAAQTAAFVKITKARAQSNDFASLDAAVTRGRI FT TGTTTAEAVVTLPPP" FT polyA_site 6435 XX SQ Sequence 6435 BP; 1973 A; 1534 C; 1477 G; 1451 T; 0 other; X05198 Length: 6435 December 21, 2001 16:00 Type: N Check: 4125 .. 1 gaaaactaaa ccatacacca acaacacaac caaacccacc acgcccaatt 51 gttacacacc cgcttggaaa agtaagtcta acaaatggcc aaagtgcgcg 101 aggtttacca atcctttaca gactccacca caaaaactct catccaagat 151 gaggcttata gaaatattcg tcccatcatg gaaaaacata aactagctaa 201 cccgtacgct caaacggttg aagcggctaa tgatctagag gggttcggca 251 tagccaccaa tccctatagc attgaattgc atacacatgc agccgctaag 301 accatagaga acaaacttct agaggtgctt ggttccatcc taccacaaga 351 acctgttaca tttatgttcc ttaaacccag gaagctaaac tacatgagaa 401 gaaacccgcg gatcaaggac attttccaca atgttgccat tgaaccgaga 451 gatgtagcaa ggtaccccaa ggaaacaata attgacaaac tcacagagat 501 cacaacggac acagcataca tcggtgacac tctgcacttc ttggatccga 551 gctacatagt ggagacattc caaaactgcc caaaattgca aacattgtat 601 gcaaccttag ttctccccgt tgaggccgcc ttcaaaatgg aaagcactca 651 cccgaatata tacagcctta aatacttcgg agatggtttc cagtatatac 701 caggcaacca tggtggtgga gcataccatc atgaattttc tcatttacaa 751 tggctcaaag tgggaaagat caagtggagg gaccccaagg atagctttct 801 cgggcatctc aattacacga ctgagcaggt tgagatgcac acagtgacag 851 tacagttgca ggaatcgttc gcggcaaacc acttgtactg catcaggaga 901 ggagacttac tcacaccgga ggtacgcact ttcggccaac ctgacaggta 951 tgtgattcca ccacagatct ttcttccgaa agttcacaac tgcaagaagc 1001 cgattcttaa gaaaactatg atgcagctct tcttgtatgt taggacagtc 1051 aaggtcgcaa aaaattgtga catttttgcc aaagtcagac aattaattaa 1101 atcatctgac ttggacaaat attctgctgt ggaactggtt tacttagtaa 1151 gctatatgga gttccttgcc gatttacaag ccaccacctg cttctcagac 1201 acactttctg gtggcttgct aacaaagacc cttgcaccgg tgagggcttg 1251 gatacaagag aaaaagatgc aactatttgg tcttgaggac tacgcgaagt 1301 tagtcaaagc agttgatttc cacccagtgg atttttcttt caaggtggaa 1351 acttgggact tcagattcca cccattgcaa gcgtggaaag ccttccgacc 1401 aagggaagtg tcggacgtag aggaaatgga aaatttgttc tctgatgggg 1451 acctgctcga ttgcttcacg agaatgccag cttatgcagt aaacgcagag 1501 gaagatttgg ctgcaatcag gaaaacgccg gagatggatg ccggtcaaga 1551 agttaaggaa cctgcaggag acagaaatca atactcaaac cctgcagaaa 1601 ctttcctcag caagctccac aggaaacaca gtagggaggt gaaacatcag 1651 gccgcaaaga aagctaaacg cctagccgaa atccaggagt ccatgagagc 1701 tgaaggtgag gccgaatcaa atgagatgag cgggggcatg ggggcaatac 1751 ccagtaacgc cgaacttccc agcacaagtg gtgccagaca agaactcaca 1801 ctcccaacca ctaagcctgt tcctgcaagg tgggaagatg cctcattcac 1851 agactctagt gtggaagagg agcaggtgaa actccctgga aaagaagccg 1901 ttgagacagc aacgcaacaa gtcatcgaag gactcccttg gaaacactgg 1951 attcctcaac taaatgctgt tggattcaag gcgctggaga ttcagaggga 2001 tcgaagtgga acaatgatca tgcccatcac agaaatggtc tccgggttgg 2051 aaaaagagga tttcccggaa ggaactccaa aagagttggc acgagaattg 2101 ctcgctatga acagaagccc tgccaccatc cctttggacc tgcttagagc 2151 cagagactac ggcagtgatg tgaaaaacaa gagaattggt gccatcacaa 2201 agacacaagc agcaagttgg ggcgagtacc taacaggaaa gatagaaagc 2251 ctgactgaga ggaaagttgc ggcctgcgtc attcatggag ctggaggctc 2301 agggaaaagt catgccatcc agaaggcatt gagagaaatt ggcaagggct 2351 cagacatcac tgtcgtcctg ccgaccaatg aactgcgact agattggagt 2401 aagaaagtgc ctaacactga accatatatg ttcaaaacct atgaaaaggc 2451 gttaattggg ggaactggca gtatagtcat ctttgacgat tactcaaaac 2501 ttcctcccgg ttacatcgaa gccttaatct gtttctactc taaaatcaag 2551 ctagtcattc taacaggaga tagcagacag agcgtctatc acgaaactgc 2601 tgaagacgcc tccatcaggc atttgggacc ggcgacagag tacttctcaa 2651 aatactgcag atactatctc aatgctacac accgcaataa gaaggacctt 2701 gcaaacatgc ttggtgtcta cagtgagaga acgggagtca ccgaaatcag 2751 catgagcgcc gagttcttag aaggaatccc aactttagta ccctcggatg 2801 agaagagaag gctgtacatg ggcactggga ggaatgacac attcacatac 2851 gctggatgtc aggggctaac taagccgaaa gtacaaatag tgttggacca 2901 caacacccaa gtgtgtagcg cgaatgtgat gtacacggca ctttctagag 2951 ccaccgacag gattcacttc gtgaacacaa gtgcaaactc ttcggccttc 3001 tgggaaaagt tagacagcac cccttatctc aagactttcc tatcagtggt 3051 gagagaacaa gcgctcaagg agtacgagcc ggcagaggca gagccaattc 3101 gagagcctga gccccagaca cacatgtgtg tcgagaatga ggagtccgtg 3151 ctagaggagt acaaagagga actcttggaa aagttcgaca gagagatcca 3201 ctctgaatcc catggtcatt cgaactgtgt ccaaactgaa gacacaacca 3251 ttcagttgtt ttcgcatcaa caagcaaaag atgagaccct cctctgggca 3301 actatagatg cgcggctcaa gaccagcaat caagaaacaa acttccgaga 3351 attcttgagc aagaaggaca ttggggacgt tctgtttttg aactaccaaa 3401 aagctatggg tttgcccaaa gagcgtattc ccttctcaca agaggtctgg 3451 gaagcttgtg cccacgaagt acagagcaag tacctcagta agtcaaagtg 3501 caacttaatc aatgggactg tgagacagag tccagacttt gacgaaaaca 3551 aaattatggt attcctcaag tcgcagtggg tcacaaaggt ggaaaagcta 3601 ggtctaccca aaattaagcc aggtcaaacc atagcagctt tttatcagca 3651 gactgtgatg ctttttggaa ctatggccag gtacatgcga tggttcagac 3701 aggctttcca gccaaaagaa gtcttcataa actgtgagac tacgccagag 3751 gacatgtctg catgggcctt gaacaactgg aacttcagca gacctagctt 3801 ggctaatgac tatacagctt tcgaccagtc tcaggatgga gctatgctgc 3851 aatttgaggt gctcaaggcc aagcaccact gcataccaga ggaaatcatc 3901 caagcataca tagacattaa gaccaatgca cacattttcc taggcacatt 3951 gtcaattatg cgcctgactg gtgaaggtcc cacttttgat gcaaacactg 4001 agtgtaacat agcgtacacc catacaaagt tcgacatccc agccggaact 4051 gcccaagtgt atgcaggaga tgactcagca ctggattgcg ttccagaggt 4101 gaagcatagt ttccacaggc ttgaagacaa attactcctc aagtcaaagc 4151 ccgtaatcac acaacaaaag aaaggcagtt ggcctgaatt ttgtggttgg 4201 ctgattacac caaaaggggt aatgaaagac ccaattaagc tccatgttag 4251 cttaaaattg gccgaagcta agggtgaact caagaaatgt caagattcct 4301 atgaaattga tctgagttat gcttatgacc acaaggactc tctgcatgac 4351 ttgttcgatg agaaacagtg tcaggcacat acactcactt gcaggacact 4401 aatcaagtca gggagaggca ctgtctcact tccccgcctc aggaactttc 4451 tttaaccgtt aagttacctt agagatttga ataagatgga tattctcatc 4501 attagtttga aaagtttagg ttattctagg actcataaat ctttagattc 4551 aggacctttg gtagtacatg cagtagccgg agccggtaag tccacagccc 4601 taaggaagtt gatcctcaga cacccaacat tcactgtgca tacactcggt 4651 gtccctgaca aggtgagcat cagaactaga ggcatacaga agccaggacc 4701 tattcctgag ggcaatttcg caatcctcga tgagtatact ttggacaaca 4751 ccacaaggaa ctcataccag gcactttttg ctgaccctta tcaggcacct 4801 gagtttagcc tagagcccca cttctacttg gaaacctcat ttcgagttcc 4851 gaggaaagtg gcagatttga tagcaggctg tggcttcgat ttcgagacca 4901 actcacagga agaagggcac ttagagatca ctggcatatt taaagggccc 4951 ctacttggga aggtgatagc cattgacgag gagtccgaga caacactgtc 5001 caaacatggt gttgagtttg ttaagccctg ccaagtgact ggacttgagt 5051 tcaaagtagt cactgttgtg tctgccgcac caatagagga aattggccag 5101 tccacagctt tctacaacgc catcaccagg tcaaagggac tgacatatgt 5151 ccgcgcaggg acatagactc accgctccgg tcaattctga aaaagtgtac 5201 atagtattag gtctatcatt tgctttagtt tcaattacct ttctgctttc 5251 tagaaatagt ttaccccacg taggtgataa cattcacagt ttaccacacg 5301 gaggagctta cagagacggc accaaagcaa tcttgtacaa ctcaccaaat 5351 ctagggtcac gagtgagtct acacaacgga aagaacgcag catttgctgc 5401 cgttttacta ctgactttac tgatctatgg aagcaaatac atatctcaac 5451 gcaatcatac ttgtgcttgt ggtaacaatc atagcagtca ttagtacttc 5501 cttagtgagg actgaacctt gtgtcatcaa gattactgga gaatcaatca 5551 cagtgttggc ttgcaaatta gatgcagaaa ccatcagagc cattgccgat 5601 ctcaagccac tctccgttga acggttaagt ttccattgat actcgaaaga 5651 tgtcagcacc agctagcaca acacaggcca cagggtcaac tacctcaact 5701 accacaaaaa ctgcaggcgc aactcctgcc acagcttcag gactgttcac 5751 catcccggat ggggatttct ttagtacagc ccgtgctgta gtagccagcg 5801 atgccgttgc gacgaatgag gacctcagcg agattgaggc tgtctggaag 5851 gacatgaagg tgcccacaga cactatggca caggctgctt gggacttagt 5901 cagacactgt gctgatgtgg gctcatctgc tcaaacagaa atgatagata 5951 cgggtcccta ctccaacggc atcagcagag ccagactggc agcagcaatc 6001 aaagaggtgt gcacacttag gcaattttgc atgaagtatg ccccagtggt 6051 atggaactgg atgctgacta acaacagtcc acctgctaac tggcaagcgc 6101 aaggtttcaa gcctgagcac aaattcgctg cattcgactt cttcaatgga 6151 gtcaccaacc cagctgccat catgcccaaa gaggggctca ttcggccacc 6201 gtctgaagct gaaatgaatg ctgcccaaac tgctgccttt gtgaagatta 6251 caaaggccag ggcacaatcc aacgactttg ccagcctaga tgcagctgtc 6301 actcgaggtc gtatcactgg aacaacaacc gctgaggctg ttgtcactct 6351 accaccacca taactacgtc tacataaccg acgcctaccc cagtttcata 6401 gtattttctg gtttgattgt atgaataata taaat