Sequence of DPV Tomato black ring virus satellite RNA
Tomato black ring virus satellite RNA gene for 48 kDa protein
ACC No: X05687
Dated: 2008-10-23 | Length: 1376 | CRC: -720594382
ID X05687; SV 1; linear; genomic RNA; STD; VRL; 1376 BP. XX AC X05687; D00144; XX DT 02-APR-1988 (Rel. 15, Created) DT 23-OCT-2008 (Rel. 97, Last updated, Version 7) XX DE Tomato black ring virus satellite RNA gene for 48 kDa protein XX KW satellite RNA. XX OS Tomato black ring virus satellite RNA OC Viruses; Satellites; Satellite Nucleic Acids; OC Single stranded RNA satellites; Large single stranded RNA satellites. XX RN [1] RP 1-1376 RA Hemmer O., Meyer M., Greif C., Fritsch C.; RT "Comparison of the nucleotide sequences of five tomato black ring virus RT satellite RNAs"; RL J. Gen. Virol. 68:1823-1833(1987). XX RN [2] RP 1-1376 RA Fritsch C.; RT ; RL Submitted (15-FEB-1988) to the EMBL/GenBank/DDBJ databases. XX CC Data kindly reviewed (15-FEB-1988) by Fritsch C. XX FH Key Location/Qualifiers FH FT source 1. .1376 FT /organism="Tomato black ring virus satellite RNA" FT /serotype="L" FT /mol_type="genomic RNA" FT /db_xref="taxon:196089" FT CDS 15. .1289 FT /product="48 kDa protein" FT /db_xref="UniProtKB/Swiss-Prot:P22050" FT /protein_id="CAB59632.1" FT /translation="MKSYFCVTPTGCLKTHTRPRIVPKHSKKCLRTYSRPRSSLSDSEG FT WCVVLPRDGGGRKRKADGSQGRPSNNPGRPSRKWTEKTIAAPPQGFFSRRDNGYWVPKS FT PEKKYVPKNLPRNMDGKKTYKDALTSPAKIQIKPTPESILLAQKIQNSTFKSRGKVTLS FT QTSLPLVNRFQELQLNTLLEPVEESTPFGVNDKRAQHLFCKKVERKVGRTTMLVCPITG FT TESHIDVKRGISARIVDSMASVVHTDKLPEYERGHVVIKNVSRTKRVCTPVPFIGTFSD FT RAIRVECDDHTDELASASSVPSIWKPSKKQHAVPISSSNEMGSAVGTKPDWYTPVKTCT FT HRQYQKVQRVFLDAMNIMRTLRFHIGPRELRETWVKCWLQVHKKNVAFPGWMITPLLSG FT TVPCAQEFFLPLAGENRGFVTVCQA" FT old_sequence 150 FT /note="u was c in [1]" FT /citation=[1] FT misc_feature 1302. .1362 FT /note="potential stem-loop structure" FT repeat_region 1302. .1327 FT /rpt_type=INVERTED FT /note="imp.inverted repeat A" FT repeat_region 1341. .1362 FT /rpt_type=INVERTED FT /note="imp.inverted repeat A'" XX SQ Sequence 1376 BP; 385 A; 326 C; 325 G; 340 T; 0 other; x05687 Length: 1376 23-OCT-2008 Type: N Check: 2574 .. 1 ttgaaaaaat acagatgaag tcttattttt gtgtaacccc aacaggttgt 51 cttaagactc atactcgacc acgaatagtt cctaagcatt caaagaaatg 101 cctaaggacc tattctcggc cacgctccag cctttctgac tcggaaggct 151 ggtgtgtggt gctcccccgt gacggggggg gccgtaagcg caaggcagac 201 ggtagccagg gccgtccttc aaacaatccc ggtcgtccga gcaggaaatg 251 gacggaaaaa acaattgctg ctcccccgca gggcttcttc agcaggaggg 301 acaatgggta ctgggttccc aagtctccgg agaagaagta tgttccgaag 351 aatcttccta ggaacatgga tggcaagaaa acctataagg atgccttgac 401 ctcccctgcg aaaatccaaa tcaaacccac ccctgaaagt attcttttgg 451 ctcaaaagat acaaaattca accttcaaat ctaggggaaa agtgacactg 501 agccaaactt ctttaccact cgtcaaccgg tttcaggaac tccaattgaa 551 tactcttttg gaacctgttg aagagtccac acccttcggg gttaacgata 601 aacgagcgca acaccttttt tgtaaaaagg tggaacgcaa ggttggacgc 651 acaacaatgt tggtgtgtcc aattacaggt actgagtccc acatagacgt 701 taaacgtggg attagtgcca gaatcgtgga ctccatggcc tcggtagtgc 751 ataccgataa acttcccgaa tatgaacggg gccatgttgt gataaagaac 801 gtctcacgta ccaagagggt atgtacgcca gttcctttca tcggaacttt 851 tagtgatcgc gcaattagag ttgaatgcga cgatcatacc gatgaactgg 901 cctctgcatc tagtgtccct tccatttgga agccctcaaa gaaacagcat 951 gctgtcccca tttcatcttc taatgaaatg ggttcagcag taggcacgaa 1001 accggactgg tacactccgg ttaagacttg cactcatcgc caatatcaga 1051 aagtgcagcg tgtcttcctt gacgccatga acataatgcg taccttgcgt 1101 ttccatatag gaccgcgaga acttcgagaa acatgggtca agtgctggct 1151 acaggtccac aaaaagaatg tggcattccc gggttggatg ataactccgt 1201 tattgtctgg cactgtgcct tgtgcacaag aatttttcct gcctttggca 1251 ggggaaaacc gggggtttgt cacagtttgt caagcctaga gacctgtagg 1301 gtggagtttt taaaggtaca tgatcattca tgtgaaatat aagattgtat 1351 accttttctc cagagcaaat aaatct