Sequence of DPV Tomato black ring virus satellite RNA

Tomato black ring virus satellite RNA gene for 48 kDa protein

ACC No: X05687

Dated: 2008-10-23 | Length: 1376 | CRC: -720594382

                
ID   X05687; SV 1; linear; genomic RNA; STD; VRL; 1376 BP.
XX
AC   X05687; D00144;
XX
DT   02-APR-1988 (Rel. 15, Created)
DT   23-OCT-2008 (Rel. 97, Last updated, Version 7)
XX
DE   Tomato black ring virus satellite RNA gene for 48 kDa protein
XX
KW   satellite RNA.
XX
OS   Tomato black ring virus satellite RNA
OC   Viruses; Satellites; Satellite Nucleic Acids;
OC   Single stranded RNA satellites; Large single stranded RNA satellites.
XX
RN   [1]
RP   1-1376
RA   Hemmer O., Meyer M., Greif C., Fritsch C.;
RT   "Comparison of the nucleotide sequences of five tomato black ring virus
RT   satellite RNAs";
RL   J. Gen. Virol. 68:1823-1833(1987).
XX
RN   [2]
RP   1-1376
RA   Fritsch C.;
RT   ;
RL   Submitted (15-FEB-1988) to the EMBL/GenBank/DDBJ databases.
XX
CC   Data kindly reviewed (15-FEB-1988) by Fritsch C.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1376
FT                   /organism="Tomato black ring virus satellite RNA"
FT                   /serotype="L"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:196089"
FT   CDS             15. .1289
FT                   /product="48 kDa protein"
FT                   /db_xref="UniProtKB/Swiss-Prot:P22050"
FT                   /protein_id="CAB59632.1"
FT                   /translation="MKSYFCVTPTGCLKTHTRPRIVPKHSKKCLRTYSRPRSSLSDSEG
FT                   WCVVLPRDGGGRKRKADGSQGRPSNNPGRPSRKWTEKTIAAPPQGFFSRRDNGYWVPKS
FT                   PEKKYVPKNLPRNMDGKKTYKDALTSPAKIQIKPTPESILLAQKIQNSTFKSRGKVTLS
FT                   QTSLPLVNRFQELQLNTLLEPVEESTPFGVNDKRAQHLFCKKVERKVGRTTMLVCPITG
FT                   TESHIDVKRGISARIVDSMASVVHTDKLPEYERGHVVIKNVSRTKRVCTPVPFIGTFSD
FT                   RAIRVECDDHTDELASASSVPSIWKPSKKQHAVPISSSNEMGSAVGTKPDWYTPVKTCT
FT                   HRQYQKVQRVFLDAMNIMRTLRFHIGPRELRETWVKCWLQVHKKNVAFPGWMITPLLSG
FT                   TVPCAQEFFLPLAGENRGFVTVCQA"
FT   old_sequence    150
FT                   /note="u was c in [1]"
FT                   /citation=[1]
FT   misc_feature    1302. .1362
FT                   /note="potential stem-loop structure"
FT   repeat_region   1302. .1327
FT                   /rpt_type=INVERTED
FT                   /note="imp.inverted repeat A"
FT   repeat_region   1341. .1362
FT                   /rpt_type=INVERTED
FT                   /note="imp.inverted repeat A'"
XX
SQ   Sequence 1376 BP; 385 A; 326 C; 325 G; 340 T; 0 other;

x05687 Length: 1376  23-OCT-2008  Type: N  Check: 2574  ..

       1  ttgaaaaaat acagatgaag tcttattttt gtgtaacccc aacaggttgt
      51  cttaagactc atactcgacc acgaatagtt cctaagcatt caaagaaatg
     101  cctaaggacc tattctcggc cacgctccag cctttctgac tcggaaggct
     151  ggtgtgtggt gctcccccgt gacggggggg gccgtaagcg caaggcagac
     201  ggtagccagg gccgtccttc aaacaatccc ggtcgtccga gcaggaaatg
     251  gacggaaaaa acaattgctg ctcccccgca gggcttcttc agcaggaggg
     301  acaatgggta ctgggttccc aagtctccgg agaagaagta tgttccgaag
     351  aatcttccta ggaacatgga tggcaagaaa acctataagg atgccttgac
     401  ctcccctgcg aaaatccaaa tcaaacccac ccctgaaagt attcttttgg
     451  ctcaaaagat acaaaattca accttcaaat ctaggggaaa agtgacactg
     501  agccaaactt ctttaccact cgtcaaccgg tttcaggaac tccaattgaa
     551  tactcttttg gaacctgttg aagagtccac acccttcggg gttaacgata
     601  aacgagcgca acaccttttt tgtaaaaagg tggaacgcaa ggttggacgc
     651  acaacaatgt tggtgtgtcc aattacaggt actgagtccc acatagacgt
     701  taaacgtggg attagtgcca gaatcgtgga ctccatggcc tcggtagtgc
     751  ataccgataa acttcccgaa tatgaacggg gccatgttgt gataaagaac
     801  gtctcacgta ccaagagggt atgtacgcca gttcctttca tcggaacttt
     851  tagtgatcgc gcaattagag ttgaatgcga cgatcatacc gatgaactgg
     901  cctctgcatc tagtgtccct tccatttgga agccctcaaa gaaacagcat
     951  gctgtcccca tttcatcttc taatgaaatg ggttcagcag taggcacgaa
    1001  accggactgg tacactccgg ttaagacttg cactcatcgc caatatcaga
    1051  aagtgcagcg tgtcttcctt gacgccatga acataatgcg taccttgcgt
    1101  ttccatatag gaccgcgaga acttcgagaa acatgggtca agtgctggct
    1151  acaggtccac aaaaagaatg tggcattccc gggttggatg ataactccgt
    1201  tattgtctgg cactgtgcct tgtgcacaag aatttttcct gcctttggca
    1251  ggggaaaacc gggggtttgt cacagtttgt caagcctaga gacctgtagg
    1301  gtggagtttt taaaggtaca tgatcattca tgtgaaatat aagattgtat
    1351  accttttctc cagagcaaat aaatct