Sequence of DPV Tomato black ring virus satellite RNA

Tomato black ring virus satellite RNA gene for 48 kDa protein

ACC No: X05688

Dated: 2008-10-23 | Length: 1372 | CRC: -484185155

                
ID   X05688; SV 1; linear; genomic RNA; STD; VRL; 1372 BP.
XX
AC   X05688; D00143;
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DT   02-APR-1988 (Rel. 15, Created)
DT   23-OCT-2008 (Rel. 97, Last updated, Version 7)
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DE   Tomato black ring virus satellite RNA gene for 48 kDa protein
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KW   satellite RNA.
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OS   Tomato black ring virus satellite RNA
OC   Viruses; Satellites; Satellite Nucleic Acids;
OC   Single stranded RNA satellites; Large single stranded RNA satellites.
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RN   [1]
RP   1-1370
RA   Hemmer O., Meyer M., Greif C., Fritsch C.;
RT   "Comparison of the nucleotide sequences of five tomato black ring virus
RT   satellite RNAs";
RL   J. Gen. Virol. 68:1823-1833(1987).
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RN   [2]
RP   1-1372
RA   Fritsch C.;
RT   ;
RL   Submitted (15-FEB-1988) to the EMBL/GenBank/DDBJ databases.
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CC   serotype G was also seqenced and was identical to serotype E
CC   except for a substitution at pos. 570 :u(in E) corr. g(in G);
CC   the authors cannot rule out an arteficial event and have chosen
CC   to to consider sat-RNAs E and G as identical
CC   
CC   Data kindly reviewed (15-FEB-1988) by Fritsch C.
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1372
FT                   /organism="Tomato black ring virus satellite RNA"
FT                   /serotype="E"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:196089"
FT   CDS             40. .1299
FT                   /product="48 kDa protein"
FT                   /db_xref="UniProtKB/Swiss-Prot:P22049"
FT                   /protein_id="CAB59631.1"
FT                   /translation="MQKTMTRHLSRNRKPHEKVSHVPRRGPRTYQDPCDPGWYVVNSRR
FT                   GVAPQPTPTSGSLGRKPYNPGCPSRKWTKKIIAAPKHGFYSAKDHGYWVPKVQAQKKYN
FT                   PPRKVVGGGRSYKDVLSTPAKIQIKPTPESILLAQKIQNSTFKSRGKVTLSQEKIPLIN
FT                   RFQELLIEKELMEDVEESQPFVANDSRAQHLFCKKVLRKVGRREILVCPITNEESHVNL
FT                   KTGIKARIVDSMGSVVHEENIPAYNRGHVVKSMRKRIVHERESKPIPVIGSFSDRAIRV
FT                   LCDDHTDELASASSVPSEWKPSKNQRAVPCLLQNESATVVSAKPDWYAPVKVCTHKQYM
FT                   KVQRVFLDAMFIMRALRFHIDAKILRETWVKCWLQVHRKNVAFPGWMIAPLLSGTVPCE
FT                   QEFLLPRVNETRAFATVCYA"
FT   old_sequence    347. .348
FT                   /note="au was a in [1]"
FT                   /citation=[1]
FT   old_sequence    708. .709
FT                   /note="aa was a in [1]"
FT                   /citation=[1]
FT   misc_feature    1312. .1359
FT                   /note="pot.stem-loop structure"
FT   repeat_region   1312. .1330
FT                   /rpt_type=INVERTED
FT                   /note="imp.inverted repeat A"
FT   repeat_region   1343. .1359
FT                   /rpt_type=INVERTED
FT                   /note="imp.inverted repeat A'"
XX
SQ   Sequence 1372 BP; 388 A; 314 C; 326 G; 344 T; 0 other;

x05688 Length: 1372  23-OCT-2008  Type: N  Check: 5171  ..

       1  cttgaaaata attttgaaag tctctgacaa tcgtaacaga tgcagaagac
      51  tatgactcga cacttgtcgc gtaaccggaa accacatgag aaggtttccc
     101  atgttccgcg gcgagggcca cgtacctacc aggacccatg tgatcctggt
     151  tggtatgtgg taaactctcg taggggagtt gcacctcaac caacacctac
     201  tagcggtagt ctgggccgca aaccttataa tcccggttgt ccgagcagga
     251  aatggacaaa aaaaataatt gctgccccca agcacggctt ctacagtgca
     301  aaagaccatg ggtactgggt tcccaaggtt caggcacaga agaagtataa
     351  cccccctcgg aaggttgtag gtggaggaag atcttacaag gatgttcttt
     401  ccacccctgc gaaaatccaa attaaaccca cccctgaaag tattcttttg
     451  gctcaaaaga tacaaaattc aaccttcaaa tctaggggaa aagtgacact
     501  gagccaagaa aagattccac taatcaatcg cttccaagaa ctattaattg
     551  aaaaagagct tatggaagat gttgaggaat cccaaccctt tgtggccaac
     601  gattcaaggg cgcaacacct tttttgtaaa aaggtgttgc gtaaggttgg
     651  acggcgggag atcctcgtct gtccaattac taatgaagag tcacacgtta
     701  atctcaaaac tgggattaag gctcggattg tggattccat gggttcggtc
     751  gtgcatgaag agaatatacc tgcatataac cgaggccatg ttgtgaaatc
     801  gatgcgcaag cgcatcgtgc atgagaggga gagcaagcca attcctgtca
     851  tcggatcatt tagtgatcgc gcaattagag tcttatgcga cgatcacacc
     901  gatgagttgg cctctgcttc cagtgtccct tccgaatgga agccctctaa
     951  gaaccaacga gctgtccctt gcttacttca aaatgagtct gcgacagttg
    1001  taagcgcgaa accggactgg tatgcaccgg ttaaggtctg cacccacaag
    1051  caatatatga aggtgcagcg cgtcttcctt gacgccatgt tcatcatgcg
    1101  tgctcttcgc ttccatatag atgcgaagat acttcgagaa acatgggtca
    1151  agtgttggct acaggtccac agaaaaaatg tggcattccc tggttggatg
    1201  atagctccgc tattatctgg cactgttcct tgtgaacagg agtttctttt
    1251  acctcgtgta aatgagactc gggcgtttgc cacagtgtgc tatgcctaga
    1301  gacctgtagg gttgagtttt taaaggtaca tgactttaag attgtatacc
    1351  ctttctcaag agcaaattaa tc