Sequence of DPV Tomato black ring virus satellite RNA
Tomato black ring virus satellite RNA gene for 48 kDa protein
ACC No: X05688
Dated: 2008-10-23 | Length: 1372 | CRC: -484185155
ID X05688; SV 1; linear; genomic RNA; STD; VRL; 1372 BP. XX AC X05688; D00143; XX DT 02-APR-1988 (Rel. 15, Created) DT 23-OCT-2008 (Rel. 97, Last updated, Version 7) XX DE Tomato black ring virus satellite RNA gene for 48 kDa protein XX KW satellite RNA. XX OS Tomato black ring virus satellite RNA OC Viruses; Satellites; Satellite Nucleic Acids; OC Single stranded RNA satellites; Large single stranded RNA satellites. XX RN [1] RP 1-1370 RA Hemmer O., Meyer M., Greif C., Fritsch C.; RT "Comparison of the nucleotide sequences of five tomato black ring virus RT satellite RNAs"; RL J. Gen. Virol. 68:1823-1833(1987). XX RN [2] RP 1-1372 RA Fritsch C.; RT ; RL Submitted (15-FEB-1988) to the EMBL/GenBank/DDBJ databases. XX CC serotype G was also seqenced and was identical to serotype E CC except for a substitution at pos. 570 :u(in E) corr. g(in G); CC the authors cannot rule out an arteficial event and have chosen CC to to consider sat-RNAs E and G as identical CC CC Data kindly reviewed (15-FEB-1988) by Fritsch C. XX FH Key Location/Qualifiers FH FT source 1. .1372 FT /organism="Tomato black ring virus satellite RNA" FT /serotype="E" FT /mol_type="genomic RNA" FT /db_xref="taxon:196089" FT CDS 40. .1299 FT /product="48 kDa protein" FT /db_xref="UniProtKB/Swiss-Prot:P22049" FT /protein_id="CAB59631.1" FT /translation="MQKTMTRHLSRNRKPHEKVSHVPRRGPRTYQDPCDPGWYVVNSRR FT GVAPQPTPTSGSLGRKPYNPGCPSRKWTKKIIAAPKHGFYSAKDHGYWVPKVQAQKKYN FT PPRKVVGGGRSYKDVLSTPAKIQIKPTPESILLAQKIQNSTFKSRGKVTLSQEKIPLIN FT RFQELLIEKELMEDVEESQPFVANDSRAQHLFCKKVLRKVGRREILVCPITNEESHVNL FT KTGIKARIVDSMGSVVHEENIPAYNRGHVVKSMRKRIVHERESKPIPVIGSFSDRAIRV FT LCDDHTDELASASSVPSEWKPSKNQRAVPCLLQNESATVVSAKPDWYAPVKVCTHKQYM FT KVQRVFLDAMFIMRALRFHIDAKILRETWVKCWLQVHRKNVAFPGWMIAPLLSGTVPCE FT QEFLLPRVNETRAFATVCYA" FT old_sequence 347. .348 FT /note="au was a in [1]" FT /citation=[1] FT old_sequence 708. .709 FT /note="aa was a in [1]" FT /citation=[1] FT misc_feature 1312. .1359 FT /note="pot.stem-loop structure" FT repeat_region 1312. .1330 FT /rpt_type=INVERTED FT /note="imp.inverted repeat A" FT repeat_region 1343. .1359 FT /rpt_type=INVERTED FT /note="imp.inverted repeat A'" XX SQ Sequence 1372 BP; 388 A; 314 C; 326 G; 344 T; 0 other; x05688 Length: 1372 23-OCT-2008 Type: N Check: 5171 .. 1 cttgaaaata attttgaaag tctctgacaa tcgtaacaga tgcagaagac 51 tatgactcga cacttgtcgc gtaaccggaa accacatgag aaggtttccc 101 atgttccgcg gcgagggcca cgtacctacc aggacccatg tgatcctggt 151 tggtatgtgg taaactctcg taggggagtt gcacctcaac caacacctac 201 tagcggtagt ctgggccgca aaccttataa tcccggttgt ccgagcagga 251 aatggacaaa aaaaataatt gctgccccca agcacggctt ctacagtgca 301 aaagaccatg ggtactgggt tcccaaggtt caggcacaga agaagtataa 351 cccccctcgg aaggttgtag gtggaggaag atcttacaag gatgttcttt 401 ccacccctgc gaaaatccaa attaaaccca cccctgaaag tattcttttg 451 gctcaaaaga tacaaaattc aaccttcaaa tctaggggaa aagtgacact 501 gagccaagaa aagattccac taatcaatcg cttccaagaa ctattaattg 551 aaaaagagct tatggaagat gttgaggaat cccaaccctt tgtggccaac 601 gattcaaggg cgcaacacct tttttgtaaa aaggtgttgc gtaaggttgg 651 acggcgggag atcctcgtct gtccaattac taatgaagag tcacacgtta 701 atctcaaaac tgggattaag gctcggattg tggattccat gggttcggtc 751 gtgcatgaag agaatatacc tgcatataac cgaggccatg ttgtgaaatc 801 gatgcgcaag cgcatcgtgc atgagaggga gagcaagcca attcctgtca 851 tcggatcatt tagtgatcgc gcaattagag tcttatgcga cgatcacacc 901 gatgagttgg cctctgcttc cagtgtccct tccgaatgga agccctctaa 951 gaaccaacga gctgtccctt gcttacttca aaatgagtct gcgacagttg 1001 taagcgcgaa accggactgg tatgcaccgg ttaaggtctg cacccacaag 1051 caatatatga aggtgcagcg cgtcttcctt gacgccatgt tcatcatgcg 1101 tgctcttcgc ttccatatag atgcgaagat acttcgagaa acatgggtca 1151 agtgttggct acaggtccac agaaaaaatg tggcattccc tggttggatg 1201 atagctccgc tattatctgg cactgttcct tgtgaacagg agtttctttt 1251 acctcgtgta aatgagactc gggcgtttgc cacagtgtgc tatgcctaga 1301 gacctgtagg gttgagtttt taaaggtaca tgactttaag attgtatacc 1351 ctttctcaag agcaaattaa tc