Sequence of DPV Tomato black ring virus satellite RNA
Tomato black ring virus satellite RNA gene for 48 kDa protein
ACC No: X05689
Dated: 2008-10-23 | Length: 1374 | CRC: -1665478576
ID X05689; SV 1; linear; genomic RNA; STD; VRL; 1374 BP. XX AC X05689; D00142; XX DT 02-APR-1988 (Rel. 15, Created) DT 23-OCT-2008 (Rel. 97, Last updated, Version 6) XX DE Tomato black ring virus satellite RNA gene for 48 kDa protein XX KW satellite RNA. XX OS Tomato black ring virus satellite RNA OC Viruses; Satellites; Satellite Nucleic Acids; OC Single stranded RNA satellites; Large single stranded RNA satellites. XX RN [1] RP 1-1371 RA Hemmer O., Meyer M., Greif C., Fritsch C.; RT "Comparison of the nucleotide sequences of five tomato black ring virus RT satellite RNAs"; RL J. Gen. Virol. 68:1823-1833(1987). XX RN [2] RP 1-1374 RA Fritsch C.; RT ; RL Submitted (15-FEB-1988) to the EMBL/GenBank/DDBJ databases. XX CC Data kindly reviewed (15-FEB-1988) by Fritsch C. XX FH Key Location/Qualifiers FH FT source 1. .1374 FT /organism="Tomato black ring virus satellite RNA" FT /strain="C serotype" FT /mol_type="genomic RNA" FT /db_xref="taxon:196089" FT old_sequence 33. .34 FT /note="au was a in [1]" FT /citation=[1] FT CDS 40. .1299 FT /product="48 kDa protein" FT /db_xref="UniProtKB/Swiss-Prot:P22048" FT /protein_id="CAB59630.1" FT /translation="MQKTMTRHLSRNRKPHEKVSHVPRRGPRTYQDPCDPGWCVVNSCR FT RVAPQPIPTSGSLGRKPLNPGCPSRKWTEKIIAAPKHGFYSAKDHGYWVPKVKVQKKYN FT PLQKVVGGGKSYKDVLTTPATIQIKPTPESILLAQKIQNSTFKSRGKVTLSQEKIPLVN FT RFQELLIEKELMEEIEESQPFVANDPRAQHLICKKVPRKVGRREILVCPITNDESHLNL FT KSGIRAEIVDSMGSVVHAEKIAEYNRGHVVKSMRKRIVYERESKPIPIIGSFSDRAIRV FT SCDDHTDELASASSVPSEWKPSKNQRAVPCLLQNESGTVVSTKPDWYTPVKVCTHKQYM FT KVQRVFLDAMNIMRALRFHIDSKTLRETWVKCWLQVHKKNVAFPGWMIAPLLSGTVPCE FT QEFLLPRVNETRAFVTTCYA" FT old_sequence 96. .97 FT /note="uu was u in [1]" FT /citation=[1] FT old_sequence 792 FT /note="a was u in [1]" FT /citation=[1] FT old_sequence 894 FT /note="c was a in [1]" FT /citation=[1] FT old_sequence 1167 FT /note="u was c in [1]" FT /citation=[1] FT stem_loop 1312. .1361 FT repeat_region 1312. .1330 FT /rpt_type=INVERTED FT /note="imp.inverted repeat A" FT old_sequence 1328. .1329 FT /note="uu was u in [1]" FT /citation=[1] FT repeat_region 1345. .1361 FT /rpt_type=INVERTED FT /note="imp.inverted repeat A'" XX SQ Sequence 1374 BP; 399 A; 310 C; 318 G; 347 T; 0 other; x05689 Length: 1374 23-OCT-2008 Type: N Check: 1453 .. 1 tttgaaaata attttgaaag tctctgacaa tcgtaactga tgcagaagac 51 tatgactcga cacttgtcgc gtaaccggaa gcctcatgag aaggtttccc 101 atgttccgcg gcgagggcca cgtacctacc aggatccatg cgatcctggt 151 tggtgtgtgg taaactcttg taggagagtt gcacctcaac caatacctac 201 tagcggtagt ctgggccgca aacctctcaa tcccggctgt ccgagcagga 251 aatggacaga aaaaataatt gctgctccca agcacggctt ctatagtgca 301 aaagaccacg ggtactgggt tcccaaggtc aaagtacaga agaagtacaa 351 ccctctccag aaggttgtag gtggaggaaa atcctataag gatgttctca 401 ccactcctgc tacaatccaa attaaaccca cccctgaaag tattcttttg 451 gctcaaaaga tacaaaattc aaccttcaaa tctaggggaa aagtgacact 501 gagccaagaa aagattccac tggtcaatcg cttccaagaa ctattaattg 551 aaaaagaact tatggaagaa attgaggaat cccaaccctt tgtggctaat 601 gatccaaggg cgcaacacct tatttgtaaa aaggtgccgc gtaaagttgg 651 gcgacgagag atcctcgtct gcccaattac taacgatgag tcacacctta 701 atctcaagtc tgggattagg gctgagattg tggattccat gggttcggtt 751 gtgcatgcag agaaaatagc tgaatataac cgaggccatg tagtgaagtc 801 aatgcgtaag cgcattgtat acgagaggga aagtaagcca attcctatca 851 tcggatcatt tagtgatcgc gcaattagag tctcatgcga cgaccacacc 901 gatgaattgg cctctgcttc cagtgtccct tccgaatgga agccctctaa 951 gaaccaacga gctgtccctt gcttacttca aaatgagtct gggacagttg 1001 taagcacgaa gccggattgg tatacaccgg ttaaggtctg cacccacaag 1051 caatatatga aagtgcagcg tgttttcctc gacgccatga acataatgcg 1101 tgctcttcgt tttcacatag attcgaagac acttcgagaa acatgggtca 1151 agtgttggct acaggttcac aaaaaaaatg tggcattccc tggttggatg 1201 atagctccgc tattgtccgg cactgttcct tgtgaacagg agttcctttt 1251 acctcgtgta aatgagactc gggcgtttgt tacaacgtgc tatgcctaga 1301 gacctgtagg gtggagtttt taaaggtaca tgacctatta agattgtata 1351 ccttttctcc agagcaaatt tatc