Sequence of DPV Tomato black ring virus satellite RNA

Tomato black ring virus satellite RNA gene for 48 kDa protein

ACC No: X05689

Dated: 2008-10-23 | Length: 1374 | CRC: -1665478576

                
ID   X05689; SV 1; linear; genomic RNA; STD; VRL; 1374 BP.
XX
AC   X05689; D00142;
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DT   02-APR-1988 (Rel. 15, Created)
DT   23-OCT-2008 (Rel. 97, Last updated, Version 6)
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DE   Tomato black ring virus satellite RNA gene for 48 kDa protein
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KW   satellite RNA.
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OS   Tomato black ring virus satellite RNA
OC   Viruses; Satellites; Satellite Nucleic Acids;
OC   Single stranded RNA satellites; Large single stranded RNA satellites.
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RN   [1]
RP   1-1371
RA   Hemmer O., Meyer M., Greif C., Fritsch C.;
RT   "Comparison of the nucleotide sequences of five tomato black ring virus
RT   satellite RNAs";
RL   J. Gen. Virol. 68:1823-1833(1987).
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RN   [2]
RP   1-1374
RA   Fritsch C.;
RT   ;
RL   Submitted (15-FEB-1988) to the EMBL/GenBank/DDBJ databases.
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CC   Data kindly reviewed (15-FEB-1988) by Fritsch C.
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1374
FT                   /organism="Tomato black ring virus satellite RNA"
FT                   /strain="C serotype"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:196089"
FT   old_sequence    33. .34
FT                   /note="au was a in [1]"
FT                   /citation=[1]
FT   CDS             40. .1299
FT                   /product="48 kDa protein"
FT                   /db_xref="UniProtKB/Swiss-Prot:P22048"
FT                   /protein_id="CAB59630.1"
FT                   /translation="MQKTMTRHLSRNRKPHEKVSHVPRRGPRTYQDPCDPGWCVVNSCR
FT                   RVAPQPIPTSGSLGRKPLNPGCPSRKWTEKIIAAPKHGFYSAKDHGYWVPKVKVQKKYN
FT                   PLQKVVGGGKSYKDVLTTPATIQIKPTPESILLAQKIQNSTFKSRGKVTLSQEKIPLVN
FT                   RFQELLIEKELMEEIEESQPFVANDPRAQHLICKKVPRKVGRREILVCPITNDESHLNL
FT                   KSGIRAEIVDSMGSVVHAEKIAEYNRGHVVKSMRKRIVYERESKPIPIIGSFSDRAIRV
FT                   SCDDHTDELASASSVPSEWKPSKNQRAVPCLLQNESGTVVSTKPDWYTPVKVCTHKQYM
FT                   KVQRVFLDAMNIMRALRFHIDSKTLRETWVKCWLQVHKKNVAFPGWMIAPLLSGTVPCE
FT                   QEFLLPRVNETRAFVTTCYA"
FT   old_sequence    96. .97
FT                   /note="uu was u in [1]"
FT                   /citation=[1]
FT   old_sequence    792
FT                   /note="a was u in [1]"
FT                   /citation=[1]
FT   old_sequence    894
FT                   /note="c was a in [1]"
FT                   /citation=[1]
FT   old_sequence    1167
FT                   /note="u was c in [1]"
FT                   /citation=[1]
FT   stem_loop       1312. .1361
FT   repeat_region   1312. .1330
FT                   /rpt_type=INVERTED
FT                   /note="imp.inverted repeat A"
FT   old_sequence    1328. .1329
FT                   /note="uu was u in [1]"
FT                   /citation=[1]
FT   repeat_region   1345. .1361
FT                   /rpt_type=INVERTED
FT                   /note="imp.inverted repeat A'"
XX
SQ   Sequence 1374 BP; 399 A; 310 C; 318 G; 347 T; 0 other;

x05689 Length: 1374  23-OCT-2008  Type: N  Check: 1453  ..

       1  tttgaaaata attttgaaag tctctgacaa tcgtaactga tgcagaagac
      51  tatgactcga cacttgtcgc gtaaccggaa gcctcatgag aaggtttccc
     101  atgttccgcg gcgagggcca cgtacctacc aggatccatg cgatcctggt
     151  tggtgtgtgg taaactcttg taggagagtt gcacctcaac caatacctac
     201  tagcggtagt ctgggccgca aacctctcaa tcccggctgt ccgagcagga
     251  aatggacaga aaaaataatt gctgctccca agcacggctt ctatagtgca
     301  aaagaccacg ggtactgggt tcccaaggtc aaagtacaga agaagtacaa
     351  ccctctccag aaggttgtag gtggaggaaa atcctataag gatgttctca
     401  ccactcctgc tacaatccaa attaaaccca cccctgaaag tattcttttg
     451  gctcaaaaga tacaaaattc aaccttcaaa tctaggggaa aagtgacact
     501  gagccaagaa aagattccac tggtcaatcg cttccaagaa ctattaattg
     551  aaaaagaact tatggaagaa attgaggaat cccaaccctt tgtggctaat
     601  gatccaaggg cgcaacacct tatttgtaaa aaggtgccgc gtaaagttgg
     651  gcgacgagag atcctcgtct gcccaattac taacgatgag tcacacctta
     701  atctcaagtc tgggattagg gctgagattg tggattccat gggttcggtt
     751  gtgcatgcag agaaaatagc tgaatataac cgaggccatg tagtgaagtc
     801  aatgcgtaag cgcattgtat acgagaggga aagtaagcca attcctatca
     851  tcggatcatt tagtgatcgc gcaattagag tctcatgcga cgaccacacc
     901  gatgaattgg cctctgcttc cagtgtccct tccgaatgga agccctctaa
     951  gaaccaacga gctgtccctt gcttacttca aaatgagtct gggacagttg
    1001  taagcacgaa gccggattgg tatacaccgg ttaaggtctg cacccacaag
    1051  caatatatga aagtgcagcg tgttttcctc gacgccatga acataatgcg
    1101  tgctcttcgt tttcacatag attcgaagac acttcgagaa acatgggtca
    1151  agtgttggct acaggttcac aaaaaaaatg tggcattccc tggttggatg
    1201  atagctccgc tattgtccgg cactgttcct tgtgaacagg agttcctttt
    1251  acctcgtgta aatgagactc gggcgtttgt tacaacgtgc tatgcctaga
    1301  gacctgtagg gtggagtttt taaaggtaca tgacctatta agattgtata
    1351  ccttttctcc agagcaaatt tatc