Sequence of DPV Arabidopsis thaliana Ta1 virus
Arabidopsis thaliana DNA for copia-like transposable element Ta1-3
ACC No: X13291
Dated: 2002-07-06 | Length: 5258 | CRC: -1722624655
!!NA_SEQUENCE 1.0 ID ATTA13 standard; genomic DNA; PLN; 5258 BP. XX AC X13291; XX SV X13291.1 XX DT 23-NOV-1989 (Rel. 21, Created) DT 06-JUL-2002 (Rel. 72, Last updated, Version 7) XX DE Arabidopsis thaliana DNA for copia-like transposable element Ta1-3 XX KW copia-like element; integrase; polyprotein; protease; repetitive sequence; KW retrotransposon; reverse transcriptase; RNA binding protein. XX OS Arabidopsis thaliana (thale cress) OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids; OC eurosids II; Brassicales; Brassicaceae; Arabidopsis. XX RN [1] RP 1-5258 RA Voytas D.F.; RT ; RL Submitted (17-OCT-1988) to the EMBL/GenBank/DDBJ databases. RL Voytas D.F., Harvard University, 10 Wellman, Massachusetts General RL Hospital, Boston, MA 02114. XX RN [2] RX DOI; 10.1038/336242a0. RX MEDLINE; 89057095. RX PUBMED; 2904123. RA Voytas D.F., Ausubel F.M.; RT "A copia-like transposable element family in Arabidopsis thaliana"; RL Nature 336(6196):242-244(1988). XX CC The put. polyprotein contains domains for CC RNA-binding (RB) : starting at AA 257, CC protease (P) : starting at AA 318, CC integrase (INT) : starting at AA 463 and CC reverse transcriptase (RT): starting at AA 856. XX CC Data kindly reviewed (22-aug-1989) by Voytas D.F. XX FH Key Location/Qualifiers FH FT source 1. .5258 FT /db_xref="taxon:3702" FT /mol_type="genomic DNA" FT /organism="Arabidopsis thaliana" FT /strain="La-O" FT /clone_lib="Lambda FIX." FT /clone="L2B" FT repeat_region 16. .20 FT /note="target site for Ta1-3 integration" FT repeat_region 21. .5238 FT /transposon="Ta1-3" FT misc_feature 21. .534 FT /note="5' LTR" FT CDS 567. .4442 FT /product="polyprotein" FT /protein_id="CAA31653.1" FT /translation="MANDPNQNTILKTSFQVFNENSDFSLWKTCMKAHLGLAGLKGIID FT DFDLTMTVPIPKSEGKKIEDGDEQGDSSQTKIVPDLVKIEKSENAMNIIIAHVGDAVLR FT KIDHCKSAAEMWETLNKQYMETSLPNRIYVQLKFYSFKMNDTKSINENVNEFLKIVAEL FT SSLEINVVEEVRAILFLNRLSSRYSQLKHTLKYGNKALSLKDVISAARSLERELNEQKE FT TDKNTSTVLYTNERSRPQTRNQNHNKGGQGRGRSKSNSNAKLTCWYCKKEGHVKKDYFA FT RKRKLESENPGEAGVITEKLVFSEALSVNDLAVRDIWVLDSGCTSHMSARRDWFCSFRE FT DGGPTILLGDDHSVKSQGQGSIKIETHGGTIIGLENVKYVPELRRNLISTGTLDKRGYK FT HEGGDGKVRYFKNQKTALRGELVNGLYILDGNTVLSETCVAEGSKGKTELWHSRLGHIG FT LNNMKVLAGKGLVSKEEIRVLDFCENCVMGKAKKVSFNVGKHNSEDVLRYVHADLWGST FT NVTPSLSGNKYFLSIIDDKTRKVWLYFLRSKDETFDRFCEWKELVENQQNKKVKCLRTD FT NGLEFCNLKFDAYCKEHGIERHKTCTYTPQQNGVAERMNRTIMEKVRCMLNESGLGEEF FT WAEAAATAAYLINRSPASAIDHNVPEELWLNKKPGYKHLRRFGSIAYVHIDQGKLKPRA FT LKGIFIGYPAGTKGYKIWLLEEHKCVISRNVLFHEESVYKDTMKKERVVESEAEPASHS FT KSTLIKVKTPGNLNSGEVIQVSDEEESDESVEEEQEPETQVELPETQTTSSLANYQLAR FT DRERRQIHPPARFTEESGVAFALVTVETLSMEEPQSYQEATSDKEWKKWKLATHEEMDS FT LIKNGTWVLVDKPQNRKIIGCRWLFKLKSGSPGVEPVRYKAQLVAKGYTHREGVDYQEI FT FALVVKHTSIRILMSVVVDQDLELEQMDVKTAFLHGELEEELYMEQPEGCISEDGENKV FT CLLKKSLYGLKQSPRQWNKRFNRFMIDQNFIRSEHDACVYVKQVSEQEHLYLLLYVDDM FT LIAGKSKSEINKVKEQLSMEFEMKDMGPASRILGIDIIRDMKNGVLRMSQASYIHNVVQ FT RFNMAEAKVTRSPIGAHFKLAAVRDDDECIDNNAVPYASAVGSIMYAMIGIRPDLAYVI FT CLVSRYMARPGSIHWEAVKWILRYMRGSQDLNLVFTKEKEFRVTGYCDSDYAADLDRRR FT SVSGYVFTVGGNTVSWKANLQSVTALSTTEAEFMALTEAAKEALWIKGLMKDLGLEQDK FT VTLWCDS" FT misc_feature 4725. .5238 FT /note="3'LTR" FT repeat_region 5239. .5243 FT /note="target site for Ta1-3 integration" XX SQ Sequence 5258 BP; 1682 A; 846 C; 1301 G; 1429 T; 0 other; X13291 Length: 5258 May 9, 2005 17:26 Type: N Check: 4686 .. 1 tttcccaaaa gggaaatcaa tgttggagtt atgatccaat tcctaagttg 51 ctaaagtcta atgtcgacta ttaacttaag ttgagtttga atttggattg 101 gaggagctaa accggtctgg ttaagtttgg ttattgaaag aaggaaggat 151 tgagttcggt ttaatctttg aagctgaaga ctcgacttgg tttagagggt 201 ttgacgttga ctataaaaag gactcgtctt cttcttttct gtttcatcct 251 ctgtaacaaa cattgtatct tcttcttctt cctctgatct tgagcttgta 301 acggtgtgtg taaaagcttg agaaactcca ttgatatagt gaattgctgg 351 tcagaatcca gccgagacgt aggcttactc attccgagta gctgaactcg 401 taaatcctct gtgtcacttt attctttgaa tgtttcttgt tttgagagtg 451 agagattaca aattgagaga cgagagagag gttcgtgtgc gtgagatcac 501 aaatcgatca aggtttaagg ttcgtttggt aacaagtggt atcagagcca 551 ttggttcttg cgagctatgg cgaacgatcc aaatcagaac acgatcctga 601 agacctcgtt tcaagtcttt aacgagaatt cagatttttc gctatggaag 651 acgtgtatga aggcacatct gggattggca ggacttaaag gcatcatcga 701 tgattttgat cttacgatga cagtgccaat tccaaaatct gagggaaaga 751 agattgaaga tggtgacgaa caaggagatt cgtctcaaac aaagattgtt 801 cctgatctcg tgaagattga gaaatctgaa aacgcgatga acattatcat 851 cgctcatgtt ggtgatgcag tattgagaaa gatcgatcac tgcaagagtg 901 cagctgagat gtgggaaact ttgaacaagc aatacatgga aacctcattg 951 cctaatcgga tctatgtaca gctcaagttc tattcattca agatgaatga 1001 tactaagtcg atcaacgaaa acgtgaatga attcttaaag atcgtcgcag 1051 aattgagtag cttggagatc aatgtggttg aagaagtaag agccatcttg 1101 ttcttgaatc gtttgtcttc aagatattca caactcaaac atacactcaa 1151 gtatgggaac aaggcattgt cactgaaaga tgtgatatca gctgcacgtt 1201 ctcttgaaag agaacttaat gaacaaaagg aaactgataa gaacacctct 1251 acagttttgt atactaatga gagaagcaga cctcagacta gaaatcaaaa 1301 tcacaacaaa ggaggtcaag ggagaggcag aagcaaatcc aactctaatg 1351 caaagcttac gtgctggtac tgcaagaaag agggacatgt caaaaaggac 1401 tattttgcta ggaaaaggaa actagaaagt gaaaatccag gagaagctgg 1451 agtcatcact gaaaagctgg tgttttctga agcactcagt gtcaatgatc 1501 tagcagtaag agacatttgg gtacttgact caggttgcac gtctcacatg 1551 tctgcaagaa gggattggtt ctgcagtttt agagaagatg gtggccctac 1601 tattcttctg ggagatgacc actcggttaa atctcaagga caaggatcta 1651 ttaagataga aactcatgga ggcactataa tagggcttga gaatgtgaag 1701 tatgtacctg aacttagaag gaacctaatc tccacaggta ctcttgacaa 1751 aaggggatac aaacatgaag gtggtgatgg taaagtgagg tatttcaaga 1801 atcagaaaac agctttaaga ggagagcttg ttaacggact atacatactt 1851 gatggaaaca cagtattatc tgaaacgtgt gttgctgaag gatctaaggg 1901 aaaaacagaa ctctggcaca gtaggctcgg tcatatcggt ctaaacaata 1951 tgaaggtgtt agcaggaaaa gggctagtga gcaaagaaga aataagggta 2001 ctggacttct gtgaaaattg tgtcatggga aaggccaaga aagtgagctt 2051 taatgtggga aagcacaact cagaagatgt tctccgctat gtccatgcag 2101 atctgtgggg ttccacaaac gtcacacctt cattgtcagg taacaagtat 2151 ttcttgtcaa taattgatga taaaacacgc aaagtttggt tgtattttct 2201 caggtctaaa gacgaaacat ttgatcgctt ctgcgagtgg aaagagctcg 2251 ttgagaatca acaaaacaag aaagtcaagt gtttgagaac tgacaacgga 2301 ttggagtttt gcaacttgaa gtttgatgct tactgtaaag agcatggaat 2351 agaaagacac aagacctgca cctatactcc tcagcagaat ggagtagcag 2401 aacgcatgaa taggacaatc atggagaagg tgaggtgcat gttgaatgag 2451 tcagggttgg gagaagagtt ttgggcagaa gctgctgcaa ctgcagccta 2501 tttgataaac aggtccccag cgtctgcaat tgatcataat gtccctgagg 2551 aattatggtt gaataagaaa cctggttaca aacatttgag gcggtttggt 2601 tctattgcat atgtccacat agaccaaggg aagttgaagc ctagagcttt 2651 aaagggaatc tttattggat acccagctgg aacaaaaggg tataagatct 2701 ggcttctaga agaacataaa tgtgtgataa gccgaaatgt gttatttcat 2751 gaggaatcag tgtataagga tactatgaaa aaagaaagag ttgtagaaag 2801 tgaagcagaa cctgctagtc actcaaagag tacactgata aaagtaaaaa 2851 ctccagggaa tctgaattca ggtgaagtaa ttcaagtatc agatgaagaa 2901 gaatctgatg aaagtgttga agaagaacag gaacctgaaa ctcaggtgga 2951 gttaccagaa actcaaacaa ctagttcttt agctaactat caactagcta 3001 gagatcgaga aagaaggcag atccatcctc ctgctaggtt tacagaagaa 3051 agtggtgtag catttgcact agtaactgtt gagactttga gtatggagga 3101 gccgcagagt tatcaggaag caacttctga taaagaatgg aagaaatgga 3151 aacttgctac tcatgaggag atggattctc tgattaagaa cggtacatgg 3201 gtgttggttg ataaacccca gaaccgaaag atcattggtt gcagatggtt 3251 gtttaaactg aagagtggca gtccaggagt tgagcctgtg agatacaagg 3301 ctcagttagt ggcaaaaggg tacactcata gagagggtgt tgattaccaa 3351 gagatctttg ctctagtggt taaacacaca tctatcagga tattgatgtc 3401 tgttgttgtt gatcaagacc tagagttgga acagatggac gtaaagacag 3451 ctttccttca tggagagtta gaagaagaac tttatatgga acaaccagag 3501 ggttgcatat ctgaagatgg tgagaataag gtttgcttat tgaagaagtc 3551 gttgtatggg ttaaaacaat ccccaagaca gtggaacaaa cgcttcaata 3601 gattcatgat tgatcaaaac ttcattagaa gtgagcatga tgcttgtgta 3651 tatgtgaagc aggtcagtga acaagaacac ctgtacctgt tgctatacgt 3701 ggatgatatg ttgattgcag gaaagagcaa atcagaaatt aacaaggtta 3751 aagagcagct gagcatggaa tttgaaatga aagatatggg accagcgagt 3801 agaattctcg gcattgacat tataagagac atgaagaatg gagttctacg 3851 catgtctcag gctagctaca ttcacaatgt ggtccagcgg ttcaacatgg 3901 ctgaagccaa agtcacacgg tcaccaatag gagctcattt caagctagct 3951 gcagtgaggg acgatgatga gtgcattgac aacaatgctg taccttatgc 4001 cagtgcagtt ggcagtatca tgtacgccat gataggtata cgtcctgact 4051 tagcttatgt tatatgtctg gtaagcaggt acatggcaag accaggcagt 4101 attcactggg aagcagtcaa gtggattctc aggtacatgc gaggatctca 4151 ggacttaaat cttgtgttta caaaagagaa agaattcaga gttacggggt 4201 attgtgattc ggactatgct gctgatttgg atagaagaag atcagtaagt 4251 ggatacgtgt ttacagtagg tggtaacaca gtaagttgga aggcaaattt 4301 gcagtcagtg actgcattat caactacaga agccgagttc atggcactta 4351 cagaagctgc caaagaagct ttatggatta aaggcttaat gaaggacttg 4401 ggacttgagc aggataaggt aaccctttgg tgtgattcct agtcagctat 4451 ttgcttgttt aaaaacagta ctcatcatga aaggactaag catatagatg 4501 tcagatacaa cttcataaga gatgttgtgg aagcaggaga tgtggatgta 4551 cttaagatac acacttcaag aaatcctgcg gatgctttaa ccaagagcat 4601 tccggtaaac aagtttcagt cagctttaga gttgctgaag ctggttaagt 4651 gggactgagg tgattcagcc actgctatga ccatggagag taattcacgg 4701 ttggaatagg atcaaggtgg agattgttgg agttatgatc caattcctaa 4751 gttgctaaag tctaatgtcg actattgact taagctgagt ttgaatttgg 4801 attggaggag ctaaaccggt ctggttaagt ttggttattg aaagaaggaa 4851 ggattgagtt cggtttaatc tttgaagctg aagactcgac ttggtttaga 4901 gggtttgacg ttgactataa aaaggattcg tcttcttctt ttctgtttca 4951 tcctctgtaa caaacattgt atcttcttct tcttcctctg atcttgagct 5001 tgtaacggtg tgtgtaaaag cttgagaaac tccactgata tagtgaattg 5051 ctggtcagaa tccagccgag acgtaggctt actcattccg agtagctgaa 5101 cccgtaaatc ttctgtgtca ctttattctt tgagtgtttc ctgttttgag 5151 agtgagagat tacaaattga gagacgagag agaggttcgt gtgcgtgaga 5201 tcacaaatcg atcaaggttt aaggttcgtt tggtaacaat caatataact 5251 tcaatgta