Sequence of DPV Solanum tuberosum Tst1 virus
Potato DNA for copia-like transposable element
ACC No: X52387
Dated: 2002-07-07 | Length: 5060 | CRC: 1825952589
!!NA_SEQUENCE 1.0
ID STCOPT standard; genomic DNA; PLN; 5060 BP.
XX
AC X52387; X52287;
XX
SV X52387.1
XX
DT 26-JUL-1991 (Rel. 28, Created)
DT 07-JUL-2002 (Rel. 72, Last updated, Version 15)
XX
DE Potato DNA for copia-like transposable element
XX
KW copia-like element; retrotransposon; transposable element;
KW unidentified reading frame.
XX
OS Solanum tuberosum (potato)
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; asterids;
OC lamiids; Solanales; Solanaceae; Solanum.
XX
RN [1]
RP 1-5060
RA Brisson N.;
RT ;
RL Submitted (02-APR-1990) to the EMBL/GenBank/DDBJ databases.
RL Brisson N., Universite de Montreal, Departement de Biochemie, P.O.Box 6128,
RL Station A, Montreal, Quebec, H3C 3J7, Canada.
XX
RN [3]
RP 1-5060
RX MEDLINE; 90370492.
RX PUBMED; 2168544.
RA Camirand A., Brisson N.;
RT "The complete nucleotide sequence of Tst1 retrotransposon of potato";
RL Nucleic Acids Res. 18(16):4929-4929(1990).
XX
RN [4]
RX DOI; 10.1007/BF00259448.
RX MEDLINE; 91117174.
RX PUBMED; 1703627.
RA Camirand A., St-Pierre B., Marineau C., Brisson N.;
RT "Occurence of a copia-like transposable element in one of the introns of
RT the potato starch phosphorylase gene";
RL Mol. Gen. Genet. 224(1):33-39(1990).
XX
CC This element is in one of the introns of the starch phosphorylase
CC gene. See .
XX
FH Key Location/Qualifiers
FH
FT source 1. .5060
FT /db_xref="taxon:4113"
FT /mol_type="genomic DNA"
FT /organism="Solanum tuberosum"
FT /strain="kennebec"
FT repeat_region 1. .5060
FT /transposon="copia-like transposable element"
FT LTR 1. .285
FT CDS 285. .614
FT /db_xref="UniProt/TrEMBL:Q04355"
FT /note="ORF1"
FT /protein_id="CAA36613.1"
FT /translation="MVSERTISPNIIWIKQPFTETIFLKHQQERPAKNLMTQGGNASHM
FT PFQLTSHRLNGKNYLEWAQSVKLAIDGRGKLGHLTGETKKPGVGEIREFTRDCLVNKFY
FT GTSHR"
FT CDS 595. .1599
FT /db_xref="UniProt/TrEMBL:Q04356"
FT /note="ORF2"
FT /protein_id="CAA36614.1"
FT /translation="MELVIGKSYLFLPTAKDAWEAVRESYSDLENASQILELKIELWQA
FT KQGENEVTTYYNEMVSLWQELDQCYNDEWECSMDSVKAKKKEENERVYLFLARLNREFD
FT KVRSRILGKNPLPLRETFSEIRTEETGRKVMLKPDLNVELKPVIDSSALVTVKNEEDKK
FT KKPLCDHCKKYWHTRETCWKIHGKPLNWKNKGVDDHGFQSQNGQALQTTYFDQGQQPSP
FT ETSLFTREQLEILHKLLQSPQFRANAPKSSNPSCSFAETVSSVSSAFLSVNSNQIDSWI
FT IDSRASDHMTGSFRFFSTYTPCAGNSKIKIADGSFSAIAGKGTIKLITISCTS"
FT CDS 1532. .3559
FT /db_xref="GOA:Q04358"
FT /db_xref="InterPro:IPR001584"
FT /db_xref="UniProt/TrEMBL:Q04358"
FT /note="ORF3"
FT /protein_id="CAA36615.1"
FT /translation="MVPSLQLLEKELLNLSPSLVLHDTLHVPKLSCNLVSFRKLTRSLN
FT CRVIFYSDLCEFQEKVSGKMIGSARESGGLYFLDNGNNSLQLNPIFLNSTFVLNKVMLW
FT HYGLGHPSFYYLRHLLPQLFRNKNPSLFQCEFCEMAKHHVDTSFPSQRYQASKPFTMIH
FT SDVWGPSRISTMFGKRWFVTFIDDHTRLSWVFLLKGKSEVKNVFETFHVMVETQFNEKI
FT KIFRSDNGREFFNEQLGSFFRKTGVVHQSSCPDTPQQNGIAERKNRHLLEATRALMFTS
FT KVPQHLWGEALLTATYLINRMPSRPLEFKTPFKVFRESFPSSRLTTDLPLRVFGCTTFV
FT HVHNRSKLEPRAKKCIFVGYAPSQKGYKCYDPHARKIIVTMDLTFFESQLYFTTHLQGE
FT YHLGEDSFFVILRKLDIKQMRSLILQINTDVRDVGEDINKCDPRDDKDQSDLMIKTQKF
FT KPEPVAPSNDKNKNGNREQKTEMQVYSRRNRTQEKRTEDSQHCQKSVPQDLTVIQGTLP
FT TDSISNSLDLDLPIAKRKGVRNTSKYPISMFVSYKKLSPSYSAFTSQLSSVEIPTNVQD
FT ALQVPEWKEAILEELRALEKNETWELVDLPEGKKPVGCKWVFTTKFKSDGSLERYKAHL
FT VVKDHTDISMHDYLETFAPVAKLNSIRVLLTIAVNLDWSL"
FT CDS 3569. .4741
FT /db_xref="UniProt/TrEMBL:Q04357"
FT /note="ORF4"
FT /protein_id="CAA36616.1"
FT /translation="MKNVFLNGHLEEEVYMDPPPGFEGKYKSKICRLRRSLYGLKQSPR
FT AWFERFTQFVKRQGYVQGQADHTMFTRHSLEGKTTVLIVYVDDIILTGDDVVEIKNLKE
FT RLASEFEIKDLGPLKYFLGMEVARSKKGIIVSQRKYVLDLLKETGMSGCRPTETPIDPN
FT LKFVKEGKLIDKGQYQRLVGKLIYLSHTRPDISFAVSLVIQFMHYPREEHQEAVYRILR
FT YLKSSPGKGLFFKKNEQRSLEAYTDADWAGSSIDRRSTSGYCTFVWGNLVTWRSKKQNV
FT VARSSAEAEYRSMALGICEILWLKRFLEELRRPVSFPMKLYCDNKAAISIAHNPVQHDR
FT TKHVEVTDTSLKRRLKMEVCAFLLFQQQNKLQIFSQKVFSELLLSPLLAS"
FT LTR 4778. .5060
XX
SQ Sequence 5060 BP; 1625 A; 862 C; 1055 G; 1518 T; 0 other;
X52387 Length: 5060 May 9, 2005 17:26 Type: N Check: 8746 ..
1 tgttgaatga gtaggcagat ttagtcataa ctgctccacc attgagctgc
51 cagatttgat tataactgct ccacaaataa agctggcaga tttgattaga
101 atctgctcct gtaaatatgg gattagaata tattattcta ggaaaatagt
151 ttagaggaaa tcctttaatt caaggatttc ctaagaatta gggattgatt
201 agtttatttg gtctttactt gttctcttat aaatactgta caaacacatc
251 gaataaaatt acattttgca gtatctaaac tttcatggta tcagagcgga
301 ccatttcccc taatatcata tggataaaac agcctttcac agagacgatc
351 tttctgaaac atcaacagga acgtcctgca aaaaatctga tgacacaagg
401 aggcaatgct tctcacatgc ccttccagtt aacttctcat cgattaaatg
451 ggaagaacta tctggaatgg gcacagtccg taaagcttgc aatcgatggc
501 cgtggaaagc tgggacatct gaccggagag acaaagaagc cgggagttgg
551 agagatcaga gaattcactc gtgattgctt ggttaataaa ttctatggaa
601 ctagtcatag gtaaatctta tctctttttg cccactgcca aggatgcatg
651 ggaagccgtt agggagtcat attctgattt agaaaatgcc tctcaaattt
701 tggagttaaa aattgaacta tggcaagcta agcagggtga gaatgaagtc
751 actacttatt ataatgaaat ggtgtccttg tggcaggagt tagaccagtg
801 ttacaatgat gaatgggagt gttctatgga tagtgtgaaa gccaaaaaaa
851 aggaagaaaa tgagagagtt tacctttttt tagcaagatt aaaccgagag
901 tttgacaagg tcaggtcgcg aatcctagga aaaaatcctc tgccccttcg
951 tgaaactttt tctgaaatta ggacagagga aactgggagg aaagttatgt
1001 taaaacctga tttaaatgtt gaactaaaac ctgttataga ctcttcagct
1051 cttgtaacag tgaagaatga agaggacaaa aagaaaaagc cattgtgtga
1101 tcattgcaaa aaatattggc acacccgtga aacgtgttgg aagattcatg
1151 ggaaaccact aaactggaag aacaagggag ttgatgatca tggctttcaa
1201 tctcaaaatg gtcaggccct ccaaacaact tattttgatc aggggcaaca
1251 accttctcca gaaacgtctc tatttacaag ggaacaattg gaaattctgc
1301 acaaactcct tcaatctcca caatttcgtg caaatgcacc aaaatcttct
1351 aatccttctt gttcttttgc tgaaactgta tcatctgtat cgtctgcttt
1401 tcttagtgtc aattccaacc aaatagattc ttggatcata gattcaagag
1451 ctagtgacca catgactggg agtttccgtt ttttctctac ttacactcct
1501 tgtgcaggga acagtaaaat caagatagct gatggttcct tctctgcaat
1551 tgctggaaaa ggaactatta aacttatcac catctcttgt acttcatgat
1601 actcttcatg ttccaaagct ctcttgtaat ctagtttctt tccgtaaatt
1651 aacccgttct cttaattgtc gtgttatttt ttattccgat ttgtgtgaat
1701 ttcaggaaaa ggtctcgggg aagatgattg gcagtgctag agaatcagga
1751 ggtctttatt ttcttgacaa cgggaacaac tcactacagc tgaatcctat
1801 ttttttaaac tctacttttg ttttgaataa agtcatgctt tggcactatg
1851 ggcttggaca tccaagtttt tattatttaa gacatttgtt acctcagtta
1901 tttagaaata aaaatccatc cttattccaa tgtgaatttt gtgaaatggc
1951 taagcatcat gtagatactt cttttccttc tcaaagatat caggcttcaa
2001 aaccttttac aatgattcat agtgatgttt ggggaccgtc tagaatttca
2051 acaatgtttg gaaaacggtg gtttgtaact tttattgacg atcatactag
2101 attgagttgg gtttttttat tgaagggcaa atctgaggtt aaaaatgtgt
2151 ttgagacttt ccatgtcatg gtggaaacac agttcaatga gaaaatcaag
2201 atttttcgga gtgacaatgg ccgtgaattt tttaatgaac aattaggaag
2251 ttttttcaga aaaactgggg tagtacacca aagctcttgt ccagatacac
2301 ctcaacaaaa tggtatcgcc gaaagaaaga atagacatct tttagaggca
2351 acgagagctt taatgtttac tagtaaagtt ccacaacacc tttggggaga
2401 ggctctcttg actgccactt accttattaa tagaatgcca tctcgccctc
2451 ttgaatttaa gacacctttt aaagttttca gagaaagttt tcctagttct
2501 aggttaacta cagatctacc tctgagagtt tttggttgta caacatttgt
2551 tcatgttcat aatcgtagta aacttgaacc gcgggctaag aagtgtattt
2601 ttgtagggta tgccccaagt caaaagggat ataagtgtta tgatccacat
2651 gctaggaaga taattgtcac aatggaccta actttctttg agtcgcaact
2701 ctattttact actcatcttc agggggagta tcatttaggt gaagattcat
2751 tttttgtgat attgaggaaa ctagatatca agcaaatgag gagcctaata
2801 ttacaaataa atactgatgt gagagatgta ggggaagata taaataagtg
2851 tgatccaaga gatgataagg accaaagtga cttaatgata aaaactcaga
2901 aattcaaacc tgaacctgta gcgccttcaa atgacaaaaa taaaaatggg
2951 aatagagaac aaaaaacaga aatgcaggtg tattcgagaa ggaaccgaac
3001 tcaagaaaaa aggaccgaag attctcaaca ctgccaaaaa tcagtcccac
3051 aagaccttac tgtaattcaa ggtactcttc caactgattc tatttctaat
3101 tccttagatc tagatctacc tattgcgaaa cgcaaaggtg ttagaaatac
3151 ttctaaatat cctatttcta tgtttgtgtc ctacaaaaag ttgtctccta
3201 gttattcagc ctttacttca caactctcta gtgtggagat tccaacaaat
3251 gtgcaggatg ctctacaagt tcccgagtgg aaggaggcta ttttggagga
3301 attgcgagct cttgaaaaaa atgagacatg ggagttagtg gatttacccg
3351 agggaaagaa accagtgggt tgtaaatggg tgttcaccac caaattcaaa
3401 tcagacggat ccttggaaag gtataaggcc cacctagtag ttaaggatca
3451 cacagacata tcgatgcatg actatctcga gacgtttgct ccagtagcta
3501 agctaaactc aattagagtt ctgttgacaa tcgcagtaaa tctcgactgg
3551 tctctttagc aattggatat gaagaatgtt ttcttgaacg ggcacctaga
3601 ggaagaagtc tatatggatc ccccaccagg ttttgaaggg aagtacaagt
3651 caaaaatatg caggcttaga agatctcttt atggtctaaa acaatctcca
3701 agggcttggt tcgaaaggtt tactcaattt gtgaaaaggc aagggtatgt
3751 gcaaggacaa gcagatcaca caatgtttac tcgacattca ctagaaggaa
3801 aaacaaccgt tcttatagtg tatgttgacg atatcatcct cacaggagat
3851 gatgtggttg agataaaaaa tctaaaggaa cgtcttgcct cagaatttga
3901 gataaaggac ttaggcccgc taaagtactt tcttggcatg gaggttgcac
3951 gatcgaagaa aggaattata gtgtcacaaa ggaagtatgt tcttgatctg
4001 ttaaaagaaa caggaatgag tggttgtaga ccaactgaaa ctccaattga
4051 tccaaatctg aagtttgtaa aggaaggaaa attgattgat aagggtcaat
4101 atcagagatt ggtaggcaag ttgatttact tgtcacatac tagacctgat
4151 atttcctttg ctgtgagcct agtcattcag ttcatgcatt atccacgaga
4201 agaacaccaa gaagctgtgt atcgaatcct aaggtatcta aagagttcac
4251 ctgggaaagg gttgttcttc aagaagaatg agcaaagaag tcttgaggct
4301 tatacggatg cagattgggc tggttcatct attgatagga ggtctacatc
4351 tggatattgt acatttgttt ggggaaattt ggtgacatgg agaagtaaga
4401 agcaaaatgt ggtggctcga agtagtgctg aggctgagta tcgatccatg
4451 gctctcggaa tttgtgaaat attgtggctc aagagatttt tggaagaact
4501 aagaagacct gtgagttttc caatgaagtt gtattgtgac aataaggctg
4551 ccataagcat tgctcataat ccagttcaac atgatagaac aaagcatgtt
4601 gaagtgacag acacatcatt aaaaagaaga ttgaagatgg aagtgtgtgc
4651 attccttttg ttccaacaac agaacaagtt gcaaatattt tcacaaaagg
4701 tcttttcaga actacttttg agtcctttgt tagcaagtta ggcatgtttg
4751 ctatttacat gccgacttga gggggagtgt tgaatgagta ggcagattta
4801 gtcattatct gctccaccat tgagctggca gatttgatta taatttgctc
4851 cacaaataaa gctggcagat ttgagaatct gccctgtaaa tatgggatta
4901 gaatatatta ttctaggaaa atagtttaga ggaaatccct taattcaagg
4951 atttcctaag aattagggat tgattagttt atttggtctt tacttgttct
5001 cttataaata ctgtacaaac actacgaata aaatatactt ttgcagtatc
5051 taaacattca