Sequence of DPV Rice dwarf virus

Rice dwarf virus structural core protein, segment 3, genomic RNA

ACC No: X54620

Dated: 2003-03-25 | Length: 3195 | CRC: -1566798986

                !!NA_SEQUENCE 1.0
ID   RDVSEG3A   standard; RNA; VRL; 3195 BP.
XX
AC   X54620; X17203;
XX
SV   X54620.1
XX
DT   09-NOV-1990 (Rel. 25, Created)
DT   25-MAR-2003 (Rel. 75, Last updated, Version 3)
XX
DE   Rice dwarf virus structural core protein, segment 3, genomic RNA
XX
KW   segment 3; structural core protein.
XX
OS   Rice dwarf virus
OC   Viruses; dsRNA viruses; Reoviridae; Phytoreovirus.
XX
RN   [1]
RP   1-3195
RA   Suzuki N.;
RT   ;
RL   Submitted (16-FEB-1990) to the EMBL/GenBank/DDBJ databases.
RL   Suzuki N., Biotechnology Institute, Akita Prefectural College of
RL   Agriculture, Ohgata, Minami-Akita-Gun, Akita 010-04, Japan.
XX
RN   [2]
RX   MEDLINE; 91021050.
RX   PUBMED; 2219733.
RA   Suzuki N., Watanabe Y., Kusano T., Kitagawa Y.;
RT   "Sequence analysis of the rice dwarf phytoreovirus segment S3 transcript
RT   encoding for the major structural core protein of 114 kDa";
RL   Virology 179:455-459(1990).
XX
DR   GOA; P22472; P22472.
DR   SWISS-PROT; P22472; VP3_RDVA.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .3195
FT                   /db_xref="taxon:10991"
FT                   /organism="Rice dwarf virus"
FT                   /clone_lib="RD"
FT                   /clone="3RD"
FT                   /isolate="A"
FT                   /segment="3"
FT   CDS             39. .3098
FT                   /db_xref="GOA:P22472"
FT                   /db_xref="SWISS-PROT:P22472"
FT                   /product="structural core protein"
FT                   /protein_id="CAA38440.1"
FT                   /translation="MDSTGRAYDGASEFKSVLVTEGTSHYTPVEVYNILDELKTIKITS
FT                   TIAEQSVVSRTPIPLSKIGLQDVKKLFDINVIKCGSSLRIVDEPQVTFIVSYAKDIYDK
FT                   FMCIEHDSAYEPSLTMHRVRVIYSMLNDYCAKMISEVPYESSFVGELPVKSVTLNKLGD
FT                   RNMDALAEHLLFEHDVVNAQRENRIFYQRKSAPAVPVIFGDDLEPAVRERANLYHRYSV
FT                   PYHQIELALHALANDLLSIQYCHPTVVYNYLSSRAPNFLRLDDQVSLKLTSAGIGTLMP
FT                   RPVVQLLDYDLVYMSPLALNNLASRLLRKISLHLVMQMVTAVQQDLGEVVSVSSNVTNP
FT                   ASACLVRMNVQGVQTLAVFIAQSMLNPNISYGMISGLTLDCFSNFIYGACLMLFQALIP
FT                   PSALTARQRLDINNRFAYFLIKCHATQATTARLVANQVIYPVDAIDQWQSNGRDVLVAI
FT                   YNNLLPGELVLTNLIQTYFRGNTAQQAAEILIPADQTSYGANETRALSAPYLFGAPINM
FT                   LAPDARLSTYKRDLALPDRSPILITTVEGQNSISIENLRHKTGLIRAMYLNGFVTQPPA
FT                   WIRNANSNTALLSRFLDATPNLLGIYEAILANTYANAVNVYCDSVYRADIPIEWKLHQS
FT                   VDPQDLLFGVFGIVPQYQILNEAVPDFFAGGEDILILQLIRAVYDTLSNKLGRNPADIF
FT                   HLEEVFKVIEEIVSVLVQQKIDVRKYFTESMRSGSFSKPRWDNFLRRPVAQRLPNLYSV
FT                   IMTQADHVYNYMTQLTHIIPITDCFYIVKNSGFVDRGSTGPVIASSSVYENVLKVVHTI
FT                   ADFDAANALRLQRRRVDNTSYTDSLSDMFNGLRSISSSEFVRSVNGRSVFTEGRIDAIK
FT                   VNMRAKFDLQFITEEGGYSKPPNVKKLMFSDFLSFLDSHKSDYRPPLLTVPITIGLNNL
FT                   GETNSNTLRMRSEAIDEYFSSYVGAQILVPINVVDTRVYTEFSELRNFFTGDVVIRDDP
FT                   FDVWDGVKATYIPIGVHGVRLDPNGDQPPL"
XX
SQ   Sequence 3195 BP; 862 A; 681 C; 730 G; 922 T; 0 other;

   X54620  Length: 3195  April 1, 2003 09:30  Type: N  Check: 977  ..

       1  ggcaaaatcg agcgaacaat cctttatcct cgtgagctat ggacagtacc
      51  ggccgagcat atgacggtgc gtctgaattc aaaagtgtcc ttgttaccga
     101  gggtacttca cactacacac cagtggaagt atataacatc ctcgatgaat
     151  tgaaaaccat taaaataacg tctaccatag ctgagcaatc tgtggtgtca
     201  cgtactccaa ttcctctctc aaaaattggt ttacaagatg ttaagaaatt
     251  gtttgacatt aatgtcataa aatgtggctc atctttgcgg atagtggacg
     301  aacctcaagt tacgttcatt gtatcgtatg caaaggatat ctatgataaa
     351  ttcatgtgca ttgaacatga ctccgcctac gagccgagtc taacgatgca
     401  tagagtgcga gttatttact cgatgctcaa tgactattgt gcaaaaatga
     451  tttcggaggt accctacgaa agtagctttg taggggagct ccctgtcaag
     501  tcagtgactc taaataaact gggtgacaga aatatggatg ctttagctga
     551  acatctcttg tttgagcacg acgttgtgaa tgcgcagcga gagaaccgga
     601  ttttctatca aagaaagtcc gcgcctgctg tgccagtcat atttggagat
     651  gacctggagc cggctgttcg tgaaagagct aacctctatc atcgatattc
     701  ggttccgtat caccaaatcg agctggcatt gcatgcattg gcaaatgatt
     751  tactatcaat acagtactgt cacccgacgg tagtgtataa ctatttgagt
     801  tccagagctc caaactttct aaggttggat gatcaagtat cgctgaaact
     851  aacatccgct gggataggta ctcttatgcc tagacctgtg gtacagctgc
     901  ttgattatga tctagtctat atgtcaccgc tagccctgaa caatttggcc
     951  tcccgattgt tgagaaagat atctttacac ttagtaatgc aaatggttac
    1001  tgcagtgcaa caagatctgg gcgaagtggt gagtgtgtcc tccaacgtta
    1051  ccaatcccgc cagcgcttgc ctggtaagga tgaacgttca gggggtccaa
    1101  actttggctg tattcatagc ccagtccatg ttgaatccaa acatatctta
    1151  tggtatgata tctggattaa cgcttgactg tttttcgaac ttcatttacg
    1201  gcgcatgtct gatgttattt caagccctca ttccccccag tgctttgacg
    1251  gctagacaga gattagacat aaataaccgt tttgcatact ttctaattaa
    1301  gtgtcatgct actcaagcaa cgacagctag gcttgtcgcg aatcaggtca
    1351  tttacccagt ggatgcaatt gatcagtggc agtctaatgg aagagacgtt
    1401  ctggttgcaa tttataataa tttgctacca ggtgagttgg tattaaccaa
    1451  tttaatacag acttacttta ggggtaacac tgcacagcaa gcggctgaaa
    1501  tattgattcc tgcggaccag acttcttatg gcgccaatga gactcgtgct
    1551  ctatcggcac cgtatctgtt tggagctcca atcaatatgc tcgccccaga
    1601  tgctagattg tcaacgtata aacgcgatct tgctttgcct gaccgctccc
    1651  caatactgat cacgacagta gaggggcaaa actcgatctc cattgaaaat
    1701  ttgaggcata agacgggcct gatacgtgcc atgtatctaa atggcttcgt
    1751  cacgcaacct ccggcgtgga ttcgtaatgc aaattcgaat actgcgctgc
    1801  tttcacgatt ccttgatgct acgccgaact tattaggtat ttacgaagct
    1851  attttagcta atacgtatgc caatgcggta aacgtttatt gcgattccgt
    1901  ctaccgggca gatataccta ttgaatggaa gctgcaccaa tcagtagatc
    1951  ctcaggattt gttgtttggt gtgtttggta ttgttccaca atatcaaatt
    2001  ctgaatgaag cggttccgga tttcttcgct gggggtgagg atatcctaat
    2051  actacagctc attcgagctg tgtatgatac tttgtcaaat aagcttggga
    2101  ggaatcccgc tgacatattt catcttgaag aggtctttaa ggttatagaa
    2151  gaaatagtgt cggtcttagt tcaacaaaag attgacgtca gaaagtattt
    2201  cactgaaagt atgagaagtg gctcattctc aaaacccaga tgggataact
    2251  ttctaaggcg tccagtcgct cagcgactac cgaacttata cagcgtcatc
    2301  atgacgcagg cagatcatgt gtacaactac atgactcagc ttacccatat
    2351  aataccaatt actgattgtt tctatatagt aaagaattca ggattcgtcg
    2401  atcgaggctc gactggtcct gtgattgcat cctcatcagt ctatgaaaac
    2451  gtgcttaagg tcgttcatac catagctgat tttgatgcag ctaatgcttt
    2501  acgcctgcag aggagacgtg tagacaatac gtcttacact gactctcttt
    2551  ctgacatgtt caatgggtta cggtctatca gttctagtga attcgttaga
    2601  tccgtcaatg gtcgctcagt gtttactgaa ggacgcattg atgcaatcaa
    2651  agtgaatatg cgagcgaaat tcgatttgca gtttatcact gaggagggcg
    2701  gctactcaaa acctccaaat gtgaagaagc ttatgttttc ggactttctg
    2751  agtttcttag atagtcataa gagcgattac aggccaccat tgcttactgt
    2801  gccaatcacc ataggattaa ataacctggg tgaaactaat tcgaacacac
    2851  tgcgtatgcg ttcggaggcg attgatgaat atttttcaag ttacgtcggt
    2901  gcgcaaattt tggtaccgat taacgtcgta gacactcgag tctatactga
    2951  attcagtgag ctacgaaatt tctttactgg tgatgtggtc attcgagatg
    3001  acccatttga cgtctgggat ggcgtcaagg caacctacat cccgattggt
    3051  gtgcatggag tccgcttgga tccgaatgga gatcagccgc ctctatgagc
    3101  gcccggatgg catagctctg cgacgtgcga tgcagcgcaa acgaggacta
    3151  ggctcccgag ggggctgaag tggattgttt tgcttggttc ctgat