Sequence of DPV Leek white stripe virus
Leek white stripe virus genome (LWSV)
ACC No: X94560
Dated: 1997-07-16 | Length: 3662 | CRC: -1166922877
!!NA_SEQUENCE 1.0
ID LWRVREPLI standard; RNA; VRL; 3662 BP.
XX
AC X94560;
XX
SV X94560.1
XX
DT 17-JAN-1996 (Rel. 46, Created)
DT 16-JUL-1997 (Rel. 52, Last updated, Version 18)
XX
DE Leek white stripe virus genome (LWSV)
XX
KW capsid protein; ORF1 gene; ORF2 gene; ORF3 gene; ORF4 gene; ORF5 gene;
KW replicase.
XX
OS leek white stripe virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Necrovirus.
XX
RN [1]
RA Lot H., Rubino L., Delecolle B., Jacquemond M., Turturo C., Russo M.;
RT "Characterization, nucleotide sequence and genome organization of leek
RT white stripe virus, a putative new species of the genus Necrovirus";
RL Arch. Virol. 141:2375-2386(1996).
XX
RN [2]
RP 1-3662
RA Rubino L.;
RT ;
RL Submitted (28-DEC-1995) to the EMBL/GenBank/DDBJ databases.
RL L. Rubino, CNR Centro Virus e Virosi delle Colture Mediterranee, Via
RL Amendola 165/A, 70126, Bari, ITALY
XX
DR SPTREMBL; Q83102; Q83102.
DR SPTREMBL; Q83103; Q83103.
DR SPTREMBL; Q83104; Q83104.
DR SPTREMBL; Q83105; Q83105.
DR SPTREMBL; Q83106; Q83106.
XX
CC Related sequence:-
CC Russo, M., Adv. Virus Res., 144, 381-428, 1994
XX
FH Key Location/Qualifiers
FH
FT source 1. .3662
FT /db_xref="taxon:45224"
FT /organism="leek white stripe virus"
FT CDS 38. .658
FT /db_xref="SPTREMBL:Q83102"
FT /gene="ORF 1"
FT /function="unknown"
FT /protein_id="CAA64247.1"
FT /translation="MHTPQCIARFGTTCHTHIRTARLLYVKTTYFQRFLFMFFVYSAVP
FT VLFVPILFIAFFHRFFKLQLGFSPEATALMHRFVDLFSRDDEPVITETSCNVDFLPGPE
FT SRKENLVAPKRRNHYIVKVAMAAKSQVGLLGNSRANELVYARLCREEMVKHGVRPSHIA
FT RMVPLAVDCHCFIPMDEDIMAAEMMRTDVMRSRRKDMGDSHAK"
FT CDS 38. .2221
FT /db_xref="SPTREMBL:Q83103"
FT /transl_except=(pos:656. .658,aa:OTHER)
FT /gene="ORF 2"
FT /product="replicase"
FT /protein_id="CAA64248.1"
FT /translation="MHTPQCIARFGTTCHTHIRTARLLYVKTTYFQRFLFMFFVYSAVP
FT VLFVPILFIAFFHRFFKLQLGFSPEATALMHRFVDLFSRDDEPVITETSCNVDFLPGPE
FT SRKENLVAPKRRNHYIVKVAMAAKSQVGLLGNSRANELVYARLCREEMVKHGVRPSHIA
FT RMVPLAVDCHCFIPMDEDIMAAEMMRTDVMRSRRKDMGDSHAKXGGLLTTHGFTTPTWR
FT GEPAGLSVVKGPPLSKPRKLYRFTGFGANIRYGVHDHSLGNVRRGLVERVFMVEKSGKL
FT EYTPKPTPGAFNQLSRFTRALLPFLTKTTRLTTKEFLGFYTGRKLERYTKASESLEVIS
FT FQEKDSWLSTFVKAEKINITAKPDPAPRVIQPRDPRYNVELGRYLRIVKSICSRLLIAL
FT FGGRTIFKGINADEAGVEMKEIWDSFVDPIGIGMDASRFDQHISVEALQFEHKMWLEMF
FT PVSQRKHLKRLLDLQLHNRGLARCPDGTARYKVDGCRMSGDMNTSSGNCFIMCATVWNW
FT CTRLNLKHFRLANNGDDCMVFMERHNEESFRRGLIDYYTGLGFTMKVEETVDVLERVEF
FT CQTRPVLVDGSYRMIRNLHQGLSKDLHSLTDLAGVGAAQAWVSAVGEGGRVLNDGVPVL
FT GSFYKQFPLGSMPKSGTDMHEHINDAWKYKFGRKGSYQNLQPTPCSRFSFWLAFGILPE
FT EQIALEEGFSPISFQHQLEDNGEEASLLVFSRA"
FT CDS 2181. .2483
FT /db_xref="SPTREMBL:Q83104"
FT /gene="ORF 3"
FT /function="unknown"
FT /protein_id="CAA64249.1"
FT /translation="MERRPLCSCFLGHENLPLSPFIACYFLFCFIIMSEPMYRSDDSSS
FT SKTRSKRSEGTTAQVASKSAVHKEGDFKMSLEKEGPVISMTVVGDKVEFTQNFNF"
FT CDS 2483. .2653
FT /db_xref="SPTREMBL:Q83105"
FT /gene="ORF 4"
FT /function="unknown"
FT /protein_id="CAA64250.1"
FT /translation="MVIVVRESSFPLLAVWIIVIVLVAVIGALLQTPPETINQVFNEDH
FT HKTQYINIGKP"
FT CDS 2650. .3405
FT /db_xref="SPTREMBL:Q83106"
FT /gene="ORF 5"
FT /product="capsid protein"
FT /protein_id="CAA64251.1"
FT /translation="MTTSKKSNNNNKSGKSTPKPNKNRRQSRKGQMVLQTIVEPSARGS
FT IYRNVIPPGIFNRDSVNLLSHTELFVGVDSGALGAFVLNGGAIIPSQMTNCNRHAVNFS
FT KYSWKYLEFIYIPFVATTFPGQVVLAPNFDRSDANPTSIASLEQYDYAVSTPIWGGSEG
FT SRRMHSNAACSAVNVIIETDNFDKVVYPYKTLANFTGLPAVDQNIFAPATMFVATQGGN
FT NVAIQLSVGKLYCKYVIEFFNPIDPASNM"
XX
SQ Sequence 3662 BP; 952 A; 769 C; 874 G; 1067 T; 0 other;
X94560 Length: 3662 December 21, 2001 16:04 Type: N Check: 3654 ..
1 gatacctaac cagtgtctcg ttgatcagtg atcaggtatg catactcctc
51 aatgtatcgc acgcttcggc actacatgtc acacacacat ccgcaccgca
101 cgtctccttt atgtcaaaac cacttacttt caacgctttc tttttatgtt
151 ttttgtttat tccgctgttc ctgtgttgtt tgtacccatt cttttcatcg
201 ctttttttca ccggtttttc aagctgcagc tggggttttc ccccgaagct
251 acagccctta tgcataggtt cgtggacctc ttttcacggg acgatgagcc
301 tgtcatcaca gagacttcat gcaatgtaga tttccttcct ggaccagaaa
351 gtaggaaaga aaatcttgta gctcctaaga gaaggaatca ctacattgta
401 aaagtcgcta tggcagcaaa gtcccaagtg gggttactcg gcaattctag
451 ggctaatgag cttgtatatg ccaggttgtg tagggaggag atggttaagc
501 atggcgtaag accatcgcat attgcgcgga tggttccatt ggcggtagac
551 tgtcactgtt ttatccccat ggatgaggat atcatggcag cggagatgat
601 gaggacggat gttatgcgta gcagacgcaa ggacatgggg gattcccatg
651 ccaaataggg gggcctatta accacacatg ggttcaccac tcctacatgg
701 aggggtgaac ctgcgggtct tagtgtggtt aaaggacctc ccttatcaaa
751 accccgtaaa ttgtatcgtt ttacagggtt tggtgccaat atacgatacg
801 gagtgcatga tcactccttg ggtaatgtac ggaggggcct ggtagagcga
851 gttttcatgg ttgagaaatc tggaaagctc gagtacacac caaaacccac
901 ccctggcgca tttaatcaac tatctcggtt cactcgggca ttgttacctt
951 tcttgaccaa gaccaccaga cttacaacca aagaatttct tgggttctat
1001 actggtcgca agttagagag gtatacaaag gcaagtgagt cgttagaggt
1051 gatctccttt caggagaaag atagttggtt gagtacgttt gttaaggctg
1101 agaaaataaa tatcacagct aaacccgacc cggctccacg ggtgatacag
1151 cctagggatc ctaggtataa tgtggagttg gggcgctatt tgcgcatagt
1201 gaagagtatc tgttcaaggc tattgatcgc cttatttggt ggtagaacca
1251 tatttaaagg gatcaatgct gacgaggctg gagtggagat gaaggagata
1301 tgggactcat ttgttgatcc tattggcatc gggatggatg ccagtaggtt
1351 cgatcaacat atcagtgttg aggctttaca gtttgaacac aagatgtggc
1401 ttgagatgtt cccagtatcg cagaggaagc acctgaaaag gttgcttgac
1451 cttcaactcc acaatcgagg tctagctcgt tgtcctgatg gtactgctag
1501 gtataaggtg gatggatgtc gcatgtccgg tgacatgaat acatccagtg
1551 gtaattgctt cattatgtgt gcaacagttt ggaactggtg cactcgtctt
1601 aatcttaagc actttcggct cgccaacaat ggcgatgatt gcatggtgtt
1651 catggagaga cataatgagg agtcattccg tcgaggtttg atcgattact
1701 acactgggtt agggtttacg atgaaagttg aggagacggt agatgtcctc
1751 gagagggtcg agttttgcca aactagacca gtactcgtgg atggtagcta
1801 ccgcatgatc cgcaatttgc atcaaggtct ctcaaaagac ctacattccc
1851 taacagacct agcaggtgtc ggagccgctc aagcttgggt gagtgccgtt
1901 ggggagggtg gtagagtgct taatgatggg gtcccagttt tggggtcctt
1951 ctataagcaa tttcctttag gtagcatgcc taagagcgga actgatatgc
2001 acgagcatat caatgatgca tggaaatata agtttggtag gaaaggttcc
2051 tatcaaaact tacaacctac cccctgttcc aggttctcat tttggcttgc
2101 attcgggatt ttgcccgaag aacagattgc cttagaagag gggttttctc
2151 ccatttcttt ccaacatcag ttggaagata atggagagga ggcctctctg
2201 ctcgtgtttt ctagggcatg aaaacttacc actttcacca tttatcgcgt
2251 gctattttct cttttgtttt ataatcatgt ctgagcctat gtatcgttct
2301 gatgattctt cgtcatctaa aactaggtcc aagaggtcgg aggggaccac
2351 agcccaagtg gccagcaaga gtgctgttca caaggagggt gactttaaaa
2401 tgtcacttga gaaggaaggt cctgtgattt ccatgactgt tgtcggtgat
2451 aaagttgagt ttacccaaaa ctttaatttt tgatggtgat agtcgtgaga
2501 gaatcttcct ttcccctact tgctgtatgg ataatcgtca ttgtattagt
2551 ggcggttatc ggcgcattac ttcaaactcc tcctgaaacc attaaccaag
2601 ttttcaacga agatcatcac aaaactcaat atataaatat aggcaagcca
2651 tgactactag taagaaatct aataataata ataaaagtgg caagtccaca
2701 ccaaaaccaa ataaaaatcg taggcaatca cggaaaggac agatggtgct
2751 gcaaaccatt gttgaaccct ccgccagagg ttctatttat agaaacgtaa
2801 ttcccccagg catattcaat agggacagtg ttaatttact gtcgcatact
2851 gaattgtttg ttggggttga ctctggtgca ttgggagctt ttgtccttaa
2901 tggaggagcc atcattccca gtcaaatgac taattgtaac cgacatgctg
2951 ttaatttctc caagtactct tggaaatatt tggaatttat atacattcct
3001 tttgtcgcta caacatttcc tgggcaggtg gtccttgctc ctaattttga
3051 tagatccgat gccaacccta cctcaattgc tagcctcgaa caatatgatt
3101 atgcagtttc caccccaatt tggggtggat ctgagggcag tagacgcatg
3151 cacagcaatg ctgcttgctc tgccgttaat gtaatcattg agactgacaa
3201 ttttgataag gttgtttatc cgtacaagac attggccaac tttactgggt
3251 taccagctgt tgaccagaac atctttgctc ctgcaactat gtttgttgcc
3301 acacaaggtg gcaacaatgt cgcaatacaa ctatccgttg gtaagttgta
3351 ctgtaagtac gtaatcgagt tcttcaatcc cattgatcct gcatccaaca
3401 tgtagttgga ttttcttatt ttgtgtgcta ctcgcatacg tacagcgtat
3451 gttcacctca cggttttgtt aattacattc aagtcgaagt tgcatagatc
3501 ccgagaacgg gttttaacgg gctcctgtgg tgggagccga cgctcatcgc
3551 ttctgaaatt tgaatggttg tcacaaaaca acatatgatg gctcactaca
3601 acagtagtgg ggggtccagg catatgtccc gcaatactta tagctacctt
3651 ttggtagtac cc