Sequence of DPV Leek white stripe virus
Leek white stripe virus genome (LWSV)
ACC No: X94560
Dated: 1997-07-16 | Length: 3662 | CRC: -1166922877
!!NA_SEQUENCE 1.0 ID LWRVREPLI standard; RNA; VRL; 3662 BP. XX AC X94560; XX SV X94560.1 XX DT 17-JAN-1996 (Rel. 46, Created) DT 16-JUL-1997 (Rel. 52, Last updated, Version 18) XX DE Leek white stripe virus genome (LWSV) XX KW capsid protein; ORF1 gene; ORF2 gene; ORF3 gene; ORF4 gene; ORF5 gene; KW replicase. XX OS leek white stripe virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae; OC Necrovirus. XX RN [1] RA Lot H., Rubino L., Delecolle B., Jacquemond M., Turturo C., Russo M.; RT "Characterization, nucleotide sequence and genome organization of leek RT white stripe virus, a putative new species of the genus Necrovirus"; RL Arch. Virol. 141:2375-2386(1996). XX RN [2] RP 1-3662 RA Rubino L.; RT ; RL Submitted (28-DEC-1995) to the EMBL/GenBank/DDBJ databases. RL L. Rubino, CNR Centro Virus e Virosi delle Colture Mediterranee, Via RL Amendola 165/A, 70126, Bari, ITALY XX DR SPTREMBL; Q83102; Q83102. DR SPTREMBL; Q83103; Q83103. DR SPTREMBL; Q83104; Q83104. DR SPTREMBL; Q83105; Q83105. DR SPTREMBL; Q83106; Q83106. XX CC Related sequence:- CC Russo, M., Adv. Virus Res., 144, 381-428, 1994 XX FH Key Location/Qualifiers FH FT source 1. .3662 FT /db_xref="taxon:45224" FT /organism="leek white stripe virus" FT CDS 38. .658 FT /db_xref="SPTREMBL:Q83102" FT /gene="ORF 1" FT /function="unknown" FT /protein_id="CAA64247.1" FT /translation="MHTPQCIARFGTTCHTHIRTARLLYVKTTYFQRFLFMFFVYSAVP FT VLFVPILFIAFFHRFFKLQLGFSPEATALMHRFVDLFSRDDEPVITETSCNVDFLPGPE FT SRKENLVAPKRRNHYIVKVAMAAKSQVGLLGNSRANELVYARLCREEMVKHGVRPSHIA FT RMVPLAVDCHCFIPMDEDIMAAEMMRTDVMRSRRKDMGDSHAK" FT CDS 38. .2221 FT /db_xref="SPTREMBL:Q83103" FT /transl_except=(pos:656. .658,aa:OTHER) FT /gene="ORF 2" FT /product="replicase" FT /protein_id="CAA64248.1" FT /translation="MHTPQCIARFGTTCHTHIRTARLLYVKTTYFQRFLFMFFVYSAVP FT VLFVPILFIAFFHRFFKLQLGFSPEATALMHRFVDLFSRDDEPVITETSCNVDFLPGPE FT SRKENLVAPKRRNHYIVKVAMAAKSQVGLLGNSRANELVYARLCREEMVKHGVRPSHIA FT RMVPLAVDCHCFIPMDEDIMAAEMMRTDVMRSRRKDMGDSHAKXGGLLTTHGFTTPTWR FT GEPAGLSVVKGPPLSKPRKLYRFTGFGANIRYGVHDHSLGNVRRGLVERVFMVEKSGKL FT EYTPKPTPGAFNQLSRFTRALLPFLTKTTRLTTKEFLGFYTGRKLERYTKASESLEVIS FT FQEKDSWLSTFVKAEKINITAKPDPAPRVIQPRDPRYNVELGRYLRIVKSICSRLLIAL FT FGGRTIFKGINADEAGVEMKEIWDSFVDPIGIGMDASRFDQHISVEALQFEHKMWLEMF FT PVSQRKHLKRLLDLQLHNRGLARCPDGTARYKVDGCRMSGDMNTSSGNCFIMCATVWNW FT CTRLNLKHFRLANNGDDCMVFMERHNEESFRRGLIDYYTGLGFTMKVEETVDVLERVEF FT CQTRPVLVDGSYRMIRNLHQGLSKDLHSLTDLAGVGAAQAWVSAVGEGGRVLNDGVPVL FT GSFYKQFPLGSMPKSGTDMHEHINDAWKYKFGRKGSYQNLQPTPCSRFSFWLAFGILPE FT EQIALEEGFSPISFQHQLEDNGEEASLLVFSRA" FT CDS 2181. .2483 FT /db_xref="SPTREMBL:Q83104" FT /gene="ORF 3" FT /function="unknown" FT /protein_id="CAA64249.1" FT /translation="MERRPLCSCFLGHENLPLSPFIACYFLFCFIIMSEPMYRSDDSSS FT SKTRSKRSEGTTAQVASKSAVHKEGDFKMSLEKEGPVISMTVVGDKVEFTQNFNF" FT CDS 2483. .2653 FT /db_xref="SPTREMBL:Q83105" FT /gene="ORF 4" FT /function="unknown" FT /protein_id="CAA64250.1" FT /translation="MVIVVRESSFPLLAVWIIVIVLVAVIGALLQTPPETINQVFNEDH FT HKTQYINIGKP" FT CDS 2650. .3405 FT /db_xref="SPTREMBL:Q83106" FT /gene="ORF 5" FT /product="capsid protein" FT /protein_id="CAA64251.1" FT /translation="MTTSKKSNNNNKSGKSTPKPNKNRRQSRKGQMVLQTIVEPSARGS FT IYRNVIPPGIFNRDSVNLLSHTELFVGVDSGALGAFVLNGGAIIPSQMTNCNRHAVNFS FT KYSWKYLEFIYIPFVATTFPGQVVLAPNFDRSDANPTSIASLEQYDYAVSTPIWGGSEG FT SRRMHSNAACSAVNVIIETDNFDKVVYPYKTLANFTGLPAVDQNIFAPATMFVATQGGN FT NVAIQLSVGKLYCKYVIEFFNPIDPASNM" XX SQ Sequence 3662 BP; 952 A; 769 C; 874 G; 1067 T; 0 other; X94560 Length: 3662 December 21, 2001 16:04 Type: N Check: 3654 .. 1 gatacctaac cagtgtctcg ttgatcagtg atcaggtatg catactcctc 51 aatgtatcgc acgcttcggc actacatgtc acacacacat ccgcaccgca 101 cgtctccttt atgtcaaaac cacttacttt caacgctttc tttttatgtt 151 ttttgtttat tccgctgttc ctgtgttgtt tgtacccatt cttttcatcg 201 ctttttttca ccggtttttc aagctgcagc tggggttttc ccccgaagct 251 acagccctta tgcataggtt cgtggacctc ttttcacggg acgatgagcc 301 tgtcatcaca gagacttcat gcaatgtaga tttccttcct ggaccagaaa 351 gtaggaaaga aaatcttgta gctcctaaga gaaggaatca ctacattgta 401 aaagtcgcta tggcagcaaa gtcccaagtg gggttactcg gcaattctag 451 ggctaatgag cttgtatatg ccaggttgtg tagggaggag atggttaagc 501 atggcgtaag accatcgcat attgcgcgga tggttccatt ggcggtagac 551 tgtcactgtt ttatccccat ggatgaggat atcatggcag cggagatgat 601 gaggacggat gttatgcgta gcagacgcaa ggacatgggg gattcccatg 651 ccaaataggg gggcctatta accacacatg ggttcaccac tcctacatgg 701 aggggtgaac ctgcgggtct tagtgtggtt aaaggacctc ccttatcaaa 751 accccgtaaa ttgtatcgtt ttacagggtt tggtgccaat atacgatacg 801 gagtgcatga tcactccttg ggtaatgtac ggaggggcct ggtagagcga 851 gttttcatgg ttgagaaatc tggaaagctc gagtacacac caaaacccac 901 ccctggcgca tttaatcaac tatctcggtt cactcgggca ttgttacctt 951 tcttgaccaa gaccaccaga cttacaacca aagaatttct tgggttctat 1001 actggtcgca agttagagag gtatacaaag gcaagtgagt cgttagaggt 1051 gatctccttt caggagaaag atagttggtt gagtacgttt gttaaggctg 1101 agaaaataaa tatcacagct aaacccgacc cggctccacg ggtgatacag 1151 cctagggatc ctaggtataa tgtggagttg gggcgctatt tgcgcatagt 1201 gaagagtatc tgttcaaggc tattgatcgc cttatttggt ggtagaacca 1251 tatttaaagg gatcaatgct gacgaggctg gagtggagat gaaggagata 1301 tgggactcat ttgttgatcc tattggcatc gggatggatg ccagtaggtt 1351 cgatcaacat atcagtgttg aggctttaca gtttgaacac aagatgtggc 1401 ttgagatgtt cccagtatcg cagaggaagc acctgaaaag gttgcttgac 1451 cttcaactcc acaatcgagg tctagctcgt tgtcctgatg gtactgctag 1501 gtataaggtg gatggatgtc gcatgtccgg tgacatgaat acatccagtg 1551 gtaattgctt cattatgtgt gcaacagttt ggaactggtg cactcgtctt 1601 aatcttaagc actttcggct cgccaacaat ggcgatgatt gcatggtgtt 1651 catggagaga cataatgagg agtcattccg tcgaggtttg atcgattact 1701 acactgggtt agggtttacg atgaaagttg aggagacggt agatgtcctc 1751 gagagggtcg agttttgcca aactagacca gtactcgtgg atggtagcta 1801 ccgcatgatc cgcaatttgc atcaaggtct ctcaaaagac ctacattccc 1851 taacagacct agcaggtgtc ggagccgctc aagcttgggt gagtgccgtt 1901 ggggagggtg gtagagtgct taatgatggg gtcccagttt tggggtcctt 1951 ctataagcaa tttcctttag gtagcatgcc taagagcgga actgatatgc 2001 acgagcatat caatgatgca tggaaatata agtttggtag gaaaggttcc 2051 tatcaaaact tacaacctac cccctgttcc aggttctcat tttggcttgc 2101 attcgggatt ttgcccgaag aacagattgc cttagaagag gggttttctc 2151 ccatttcttt ccaacatcag ttggaagata atggagagga ggcctctctg 2201 ctcgtgtttt ctagggcatg aaaacttacc actttcacca tttatcgcgt 2251 gctattttct cttttgtttt ataatcatgt ctgagcctat gtatcgttct 2301 gatgattctt cgtcatctaa aactaggtcc aagaggtcgg aggggaccac 2351 agcccaagtg gccagcaaga gtgctgttca caaggagggt gactttaaaa 2401 tgtcacttga gaaggaaggt cctgtgattt ccatgactgt tgtcggtgat 2451 aaagttgagt ttacccaaaa ctttaatttt tgatggtgat agtcgtgaga 2501 gaatcttcct ttcccctact tgctgtatgg ataatcgtca ttgtattagt 2551 ggcggttatc ggcgcattac ttcaaactcc tcctgaaacc attaaccaag 2601 ttttcaacga agatcatcac aaaactcaat atataaatat aggcaagcca 2651 tgactactag taagaaatct aataataata ataaaagtgg caagtccaca 2701 ccaaaaccaa ataaaaatcg taggcaatca cggaaaggac agatggtgct 2751 gcaaaccatt gttgaaccct ccgccagagg ttctatttat agaaacgtaa 2801 ttcccccagg catattcaat agggacagtg ttaatttact gtcgcatact 2851 gaattgtttg ttggggttga ctctggtgca ttgggagctt ttgtccttaa 2901 tggaggagcc atcattccca gtcaaatgac taattgtaac cgacatgctg 2951 ttaatttctc caagtactct tggaaatatt tggaatttat atacattcct 3001 tttgtcgcta caacatttcc tgggcaggtg gtccttgctc ctaattttga 3051 tagatccgat gccaacccta cctcaattgc tagcctcgaa caatatgatt 3101 atgcagtttc caccccaatt tggggtggat ctgagggcag tagacgcatg 3151 cacagcaatg ctgcttgctc tgccgttaat gtaatcattg agactgacaa 3201 ttttgataag gttgtttatc cgtacaagac attggccaac tttactgggt 3251 taccagctgt tgaccagaac atctttgctc ctgcaactat gtttgttgcc 3301 acacaaggtg gcaacaatgt cgcaatacaa ctatccgttg gtaagttgta 3351 ctgtaagtac gtaatcgagt tcttcaatcc cattgatcct gcatccaaca 3401 tgtagttgga ttttcttatt ttgtgtgcta ctcgcatacg tacagcgtat 3451 gttcacctca cggttttgtt aattacattc aagtcgaagt tgcatagatc 3501 ccgagaacgg gttttaacgg gctcctgtgg tgggagccga cgctcatcgc 3551 ttctgaaatt tgaatggttg tcacaaaaca acatatgatg gctcactaca 3601 acagtagtgg ggggtccagg catatgtccc gcaatactta tagctacctt 3651 ttggtagtac cc