Sequence of DPV Citrus tristeza virus
Citrus tristeza virus defective RNA, strain T411
ACC No: Y18368
Dated: 2006-11-14 | Length: 2759 | CRC: 934747199
ID Y18368; SV 1; linear; genomic RNA; STD; VRL; 2759 BP. XX AC Y18368; XX DT 11-DEC-1998 (Rel. 58, Created) DT 14-NOV-2006 (Rel. 89, Last updated, Version 4) XX DE Citrus tristeza virus defective RNA, strain T411 XX KW defective variant. XX OS Citrus tristeza virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae; OC Closterovirus. XX RN [1] RX PUBMED; 10092024. RA Ayllon M.A., Lopez C., Navas-Castillo J., Mawassi M., Dawson W.O., RA Guerri J., Flores R., Moreno P.; RT "New defective RNAs from citrus tristeza virus: evidence for a RT replicase-driven template switching mechanism in their generation."; RL J. Gen. Virol. 80:817-821(1999). XX RN [2] RP 1-2759 RA Moreno P.; RT ; RL Submitted (05-NOV-1998) to the EMBL/GenBank/DDBJ databases. RL P. Moreno, Instituto Valenciano de Investigaciones Agrarias, Apartado RL Oficial 46113 Moncada, Valencia, SPAIN XX CC Related sequence Y16842 XX FH Key Location/Qualifiers FH FT source 1. .2759 FT /organism="Citrus tristeza virus" FT /specific_host="citrus" FT /strain="T411 from Spain" FT /mol_type="genomic RNA" FT /note=" CTV(T411) D-RNA 2.7 kb" FT /db_xref="taxon:12162" FT 5'UTR <1. .108 FT CDS 109. .183 FT /note="ORF" FT /db_xref="UniProtKB/TrEMBL:Q9WIE1" FT /protein_id="CAA77146.1" FT /translation="MSKLGASFKSLTFAVRSDYIISRI" FT misc_feature 1625. .1628 FT /note="junction site" FT /experiment="experimental evidence, no additional details FT recorded" FT misc_feature 1817 FT /note="sgRNA ORF11" FT CDS 1856. .2485 FT /note="ORF11" FT /db_xref="InterPro:IPR006893" FT /db_xref="UniProtKB/TrEMBL:Q9YJI6" FT /protein_id="CAA77147.1" FT /translation="MDDTSGQTFVSVNLSDESNTASTKVENVKSEADRLEFLRKMNPFI FT VDALVRKTNYQGARFRARIIGVCVDCGRKHDKALKTERKCKVNNTQSQNEVAHMLMHDP FT VKYLNKRKARAFSNAEMFAIELVLYTKERQLAVDLAAEREKTRLARRHPIRSPEETPEH FT YKFGMTAKAMLPDINAVDVGDNEETSSEYPVSLSVSGGVLREHHFI" FT variation 183 FT /replace="g" FT /note="in full length T411" FT variation 188. .190 FT /replace="cc" FT /note="in full length T411" FT variation 735 FT /replace="t" FT /note="in full length T411" FT variation 1114 FT /replace="c" FT /note="in full length T411" FT variation 1467 FT /replace="c" FT /note="in full length T411" XX SQ Sequence 2759 BP; 605 A; 668 C; 718 G; 768 T; 0 other; y18368 Length: 2759 14-NOV-2006 Type: N Check: 4085 .. 1 aatttcgatt caaattcacc cgtacctccg gagctcgatc cggaccctgc 51 gggacttggt gtaaatccca accagacggt tgctctacgc ccataatatc 101 aatacaacat gtcgaaactc ggagctagct tcaagtcctt gactttcgct 151 gtacgcagcg attacataat ttcgcgcatc tgacgcgccc tttaataccg 201 ttggagtcct gcacttcttc ggcactgata caaccactac ggtggttaag 251 gagttttcgg ctgctgggcc gatcgtccct ttacggaaat cctgttttcc 301 gttctctgtt cgcgctgctg ttcgcgcgat taaagctgcc ggacgtccta 351 ttgacgctcc gcgctccgga tgcctctgtg gcctccctgt tttcgacaca 401 tctggtgtcg tgcgtccccg ctctgttgcg ggcgcttgga ggtatgctct 451 gtgtaaacct ccccttactg ctgccgccaa gaagtccatt cgcaaggcga 501 agaaagattc tgcattcttt ctcagccggg cttcttctct cttctctcgg 551 gaagtcccct gcggcacgcg tcacagactt cgcaggcgtg ttgcgaaact 601 agttgaccct actgtgcgtg aaagtcccca agacaagact aaacttaagg 651 ggcgccgata tggcaaaaat tctgacctcc cgtatatggg ggaagcggcg 701 ttggatgaca tccttcgctg gattgagggg gtaaatcctc cgccgtcgat 751 ggtcgccgtt ccggtgccca tctcttttgg cactctgccc actacggctt 801 ggtgctctga ggccgacgcc gctgttctgc ggtgtcgctt agactatcac 851 gccgctgcga cttcctttcg taatgaaggg aagcacgtga gatacgtcta 901 taatgacgtg tcttccgctg ccaaccgtcc tcgtacggtt tctccccgca 951 agtgcgggcg tatttttccc agcggttctg cgctgggtgt tgaggttcca 1001 agtactaggg accgccacac cgctttcgtg agatctactc acgctagcgt 1051 tttcttttct gacgcggttc gccgcgttcg aatgttccgt cctgggcgga 1101 ataatttctt tactagcgtc gtcagtgggc ggcgcgttag ttactttaga 1151 cccggaccta acggtacggt gtctgttcta atgtcggatg gcgtcaatac 1201 ggcgcgtctc gacgttgtcg ctcccgcgta ctatgcgtac gcaaaaacgt 1251 tgggcgccag agtgcgctgt ttgtgggagt cgtccgattt ggacgatgct 1301 aaaatacgtg acggtcaatg ctacattcgt cacgtgtacg acgtggccct 1351 atattttggg aggcgcgtcg acctttctgt gcgccgcact ttgggtttat 1401 tccccacagt gggtgcgtta aaggcttatc ttgttcgcga gtatggtcgc 1451 gactctttga aggttcagat gcgcgggact tacacttttg gcagtgtatt 1501 tcattgcctg tcgactaaat cttctgtcga cttaagatct gttcctaacc 1551 atcacttggt tggtggtgag tctgctcact tgtttgttgg gcagattcgt 1601 cttgatgtcc gtggtggcgt ctctaagctg tgctgtcgga attgtcccgc 1651 acgcataaac tagattttag cgagcgagcc tttacggctt acggtatcct 1701 tttgcagaag ggcaccgtgg caaccgtttg cggtcagttt gacattaatt 1751 tagtttctcc gtcttgcgtg taggttaata cgcttctcag aacgtatggt 1801 tgtattaact aactttaatt cgaacatatt tattgtttaa agtctgtgag 1851 ttacgatgga tgatactagc ggacaaactt tcgtttctgt gaacctttct 1901 gacgaaagca acacggcaag cactaaagtt gaaaacgtaa aatcggaagc 1951 ggatcgcttg gaatttttac gtaaaatgaa tccctttatt gttgacgctc 2001 tggtgcggaa aaccaattat cagggtgctc gctttcgcgc aagaataata 2051 ggagtgtgcg tggattgtgg tagaaaacac gacaaggcgc tcaagactga 2101 acgtaagtgt aaggtcaaca atacgcaatc tcagaacgag gtggcgcata 2151 tgttgatgca cgatcccgtt aagtatttga acaaaagaaa ggctagagcc 2201 ttttctaacg cagagatgtt tgcgattgaa ttggttttgt acaccaagga 2251 aaggcaattg gcggtcgatt tagccgctga aagggagaag acgagactgg 2301 ctcgtagaca cccaatacgt tctccggaag aaactccgga acattataaa 2351 ttcggtatga ctgctaaggc aatgttaccg gacatcaacg ccgtagacgt 2401 tggtgataac gaggaaactt cgtcggagta cccagtgagt ctgagtgttt 2451 ctggcggagt tctccgtgaa caccacttca tctgattgaa gtggacggaa 2501 taagttcctt gcggaacttt aagtcgggtt ggtaaaaacc ctttatgatg 2551 gtgatgtatc actagacaat aaccggatgg gtaaagtctt taaaatgatc 2601 gaggggaaaa ttaaccgtat cctctcgttg gtctaagctc ccacagagtg 2651 gtagtggtct caagtgaggc ttaacgtatg cgtgaaccaa agaagttctc 2701 cttagagtgt gtgttgttta cccaacacac tgtccctatg gggggccaac 2751 ataggtcca