Sequence of DPV Citrus tristeza virus
Citrus tristeza virus defective RNA, strain T411
ACC No: Y18368
Dated: 2006-11-14 | Length: 2759 | CRC: 934747199
ID Y18368; SV 1; linear; genomic RNA; STD; VRL; 2759 BP.
XX
AC Y18368;
XX
DT 11-DEC-1998 (Rel. 58, Created)
DT 14-NOV-2006 (Rel. 89, Last updated, Version 4)
XX
DE Citrus tristeza virus defective RNA, strain T411
XX
KW defective variant.
XX
OS Citrus tristeza virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae;
OC Closterovirus.
XX
RN [1]
RX PUBMED; 10092024.
RA Ayllon M.A., Lopez C., Navas-Castillo J., Mawassi M., Dawson W.O.,
RA Guerri J., Flores R., Moreno P.;
RT "New defective RNAs from citrus tristeza virus: evidence for a
RT replicase-driven template switching mechanism in their generation.";
RL J. Gen. Virol. 80:817-821(1999).
XX
RN [2]
RP 1-2759
RA Moreno P.;
RT ;
RL Submitted (05-NOV-1998) to the EMBL/GenBank/DDBJ databases.
RL P. Moreno, Instituto Valenciano de Investigaciones Agrarias, Apartado
RL Oficial 46113 Moncada, Valencia, SPAIN
XX
CC Related sequence Y16842
XX
FH Key Location/Qualifiers
FH
FT source 1. .2759
FT /organism="Citrus tristeza virus"
FT /specific_host="citrus"
FT /strain="T411 from Spain"
FT /mol_type="genomic RNA"
FT /note=" CTV(T411) D-RNA 2.7 kb"
FT /db_xref="taxon:12162"
FT 5'UTR <1. .108
FT CDS 109. .183
FT /note="ORF"
FT /db_xref="UniProtKB/TrEMBL:Q9WIE1"
FT /protein_id="CAA77146.1"
FT /translation="MSKLGASFKSLTFAVRSDYIISRI"
FT misc_feature 1625. .1628
FT /note="junction site"
FT /experiment="experimental evidence, no additional details
FT recorded"
FT misc_feature 1817
FT /note="sgRNA ORF11"
FT CDS 1856. .2485
FT /note="ORF11"
FT /db_xref="InterPro:IPR006893"
FT /db_xref="UniProtKB/TrEMBL:Q9YJI6"
FT /protein_id="CAA77147.1"
FT /translation="MDDTSGQTFVSVNLSDESNTASTKVENVKSEADRLEFLRKMNPFI
FT VDALVRKTNYQGARFRARIIGVCVDCGRKHDKALKTERKCKVNNTQSQNEVAHMLMHDP
FT VKYLNKRKARAFSNAEMFAIELVLYTKERQLAVDLAAEREKTRLARRHPIRSPEETPEH
FT YKFGMTAKAMLPDINAVDVGDNEETSSEYPVSLSVSGGVLREHHFI"
FT variation 183
FT /replace="g"
FT /note="in full length T411"
FT variation 188. .190
FT /replace="cc"
FT /note="in full length T411"
FT variation 735
FT /replace="t"
FT /note="in full length T411"
FT variation 1114
FT /replace="c"
FT /note="in full length T411"
FT variation 1467
FT /replace="c"
FT /note="in full length T411"
XX
SQ Sequence 2759 BP; 605 A; 668 C; 718 G; 768 T; 0 other;
y18368 Length: 2759 14-NOV-2006 Type: N Check: 4085 ..
1 aatttcgatt caaattcacc cgtacctccg gagctcgatc cggaccctgc
51 gggacttggt gtaaatccca accagacggt tgctctacgc ccataatatc
101 aatacaacat gtcgaaactc ggagctagct tcaagtcctt gactttcgct
151 gtacgcagcg attacataat ttcgcgcatc tgacgcgccc tttaataccg
201 ttggagtcct gcacttcttc ggcactgata caaccactac ggtggttaag
251 gagttttcgg ctgctgggcc gatcgtccct ttacggaaat cctgttttcc
301 gttctctgtt cgcgctgctg ttcgcgcgat taaagctgcc ggacgtccta
351 ttgacgctcc gcgctccgga tgcctctgtg gcctccctgt tttcgacaca
401 tctggtgtcg tgcgtccccg ctctgttgcg ggcgcttgga ggtatgctct
451 gtgtaaacct ccccttactg ctgccgccaa gaagtccatt cgcaaggcga
501 agaaagattc tgcattcttt ctcagccggg cttcttctct cttctctcgg
551 gaagtcccct gcggcacgcg tcacagactt cgcaggcgtg ttgcgaaact
601 agttgaccct actgtgcgtg aaagtcccca agacaagact aaacttaagg
651 ggcgccgata tggcaaaaat tctgacctcc cgtatatggg ggaagcggcg
701 ttggatgaca tccttcgctg gattgagggg gtaaatcctc cgccgtcgat
751 ggtcgccgtt ccggtgccca tctcttttgg cactctgccc actacggctt
801 ggtgctctga ggccgacgcc gctgttctgc ggtgtcgctt agactatcac
851 gccgctgcga cttcctttcg taatgaaggg aagcacgtga gatacgtcta
901 taatgacgtg tcttccgctg ccaaccgtcc tcgtacggtt tctccccgca
951 agtgcgggcg tatttttccc agcggttctg cgctgggtgt tgaggttcca
1001 agtactaggg accgccacac cgctttcgtg agatctactc acgctagcgt
1051 tttcttttct gacgcggttc gccgcgttcg aatgttccgt cctgggcgga
1101 ataatttctt tactagcgtc gtcagtgggc ggcgcgttag ttactttaga
1151 cccggaccta acggtacggt gtctgttcta atgtcggatg gcgtcaatac
1201 ggcgcgtctc gacgttgtcg ctcccgcgta ctatgcgtac gcaaaaacgt
1251 tgggcgccag agtgcgctgt ttgtgggagt cgtccgattt ggacgatgct
1301 aaaatacgtg acggtcaatg ctacattcgt cacgtgtacg acgtggccct
1351 atattttggg aggcgcgtcg acctttctgt gcgccgcact ttgggtttat
1401 tccccacagt gggtgcgtta aaggcttatc ttgttcgcga gtatggtcgc
1451 gactctttga aggttcagat gcgcgggact tacacttttg gcagtgtatt
1501 tcattgcctg tcgactaaat cttctgtcga cttaagatct gttcctaacc
1551 atcacttggt tggtggtgag tctgctcact tgtttgttgg gcagattcgt
1601 cttgatgtcc gtggtggcgt ctctaagctg tgctgtcgga attgtcccgc
1651 acgcataaac tagattttag cgagcgagcc tttacggctt acggtatcct
1701 tttgcagaag ggcaccgtgg caaccgtttg cggtcagttt gacattaatt
1751 tagtttctcc gtcttgcgtg taggttaata cgcttctcag aacgtatggt
1801 tgtattaact aactttaatt cgaacatatt tattgtttaa agtctgtgag
1851 ttacgatgga tgatactagc ggacaaactt tcgtttctgt gaacctttct
1901 gacgaaagca acacggcaag cactaaagtt gaaaacgtaa aatcggaagc
1951 ggatcgcttg gaatttttac gtaaaatgaa tccctttatt gttgacgctc
2001 tggtgcggaa aaccaattat cagggtgctc gctttcgcgc aagaataata
2051 ggagtgtgcg tggattgtgg tagaaaacac gacaaggcgc tcaagactga
2101 acgtaagtgt aaggtcaaca atacgcaatc tcagaacgag gtggcgcata
2151 tgttgatgca cgatcccgtt aagtatttga acaaaagaaa ggctagagcc
2201 ttttctaacg cagagatgtt tgcgattgaa ttggttttgt acaccaagga
2251 aaggcaattg gcggtcgatt tagccgctga aagggagaag acgagactgg
2301 ctcgtagaca cccaatacgt tctccggaag aaactccgga acattataaa
2351 ttcggtatga ctgctaaggc aatgttaccg gacatcaacg ccgtagacgt
2401 tggtgataac gaggaaactt cgtcggagta cccagtgagt ctgagtgttt
2451 ctggcggagt tctccgtgaa caccacttca tctgattgaa gtggacggaa
2501 taagttcctt gcggaacttt aagtcgggtt ggtaaaaacc ctttatgatg
2551 gtgatgtatc actagacaat aaccggatgg gtaaagtctt taaaatgatc
2601 gaggggaaaa ttaaccgtat cctctcgttg gtctaagctc ccacagagtg
2651 gtagtggtct caagtgaggc ttaacgtatg cgtgaaccaa agaagttctc
2701 cttagagtgt gtgttgttta cccaacacac tgtccctatg gggggccaac
2751 ataggtcca