Sequence of DPV Citrus tristeza virus
Citrus tristeza virus defective RNA, strain T317
ACC No: Y18369
Dated: 2006-11-14 | Length: 1970 | CRC: 864023902
ID Y18369; SV 1; linear; genomic RNA; STD; VRL; 1970 BP. XX AC Y18369; XX DT 11-DEC-1998 (Rel. 58, Created) DT 14-NOV-2006 (Rel. 89, Last updated, Version 4) XX DE Citrus tristeza virus defective RNA, strain T317 XX KW defective variant. XX OS Citrus tristeza virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae; OC Closterovirus. XX RN [1] RX PUBMED; 10092024. RA Ayllon M.A., Lopez C., Navas-Castillo J., Mawassi M., Dawson W.O., RA Guerri J., Flores R., Moreno P.; RT "New defective RNAs from citrus tristeza virus: evidence for a RT replicase-driven template switching mechanism in their generation."; RL J. Gen. Virol. 80:817-821(1999). XX RN [2] RP 1-1970 RA Moreno P.; RT ; RL Submitted (05-NOV-1998) to the EMBL/GenBank/DDBJ databases. RL P. Moreno, Instituto Valenciano de Investigaciones Agrarias, Apartado RL Oficial 46113 Moncada, Valencia, SPAIN XX CC Related sequence Y16841 XX FH Key Location/Qualifiers FH FT source 1. .1970 FT /organism="Citrus tristeza virus" FT /specific_host="citrus" FT /strain="T317 from Spain" FT /mol_type="genomic RNA" FT /note="CTV(T317) D-RNA 1.9 kb" FT /db_xref="taxon:12162" FT 5'UTR <1. .108 FT CDS 109. .333 FT /note="ORF" FT /db_xref="UniProtKB/TrEMBL:Q9YN94" FT /protein_id="CAA77148.1" FT /translation="MSRLGASFKSLTFAVRSDYIISRIWRAFNTVGVLHFFGTDTTTTV FT VKEFSAAGPIVPLRKSCFPFSVRAAVRAI" FT misc_feature 1443. .1446 FT /note="junction site" FT /experiment="experimental evidence, no additional details FT recorded" FT variation 77 FT /replace="c" FT /note="in full length T317" FT variation 96 FT /replace="a" FT /note="in full length T317" FT variation 116 FT /replace="a" FT /note="in full length T317" FT variation 328 FT /replace="t" FT /note="in full length T317" FT variation 331 FT /replace="a" FT /note="in full length T317" FT variation 410 FT /replace="t" FT /note="in full length T317" FT variation 967 FT /replace="c" FT /note="in full length T317" FT variation 1113 FT /replace="c" FT /note="in full length T317" FT variation 1502 FT /replace="a" FT /note="in full length T317" XX SQ Sequence 1970 BP; 399 A; 513 C; 527 G; 531 T; 0 other; y18369 Length: 1970 14-NOV-2006 Type: N Check: 8768 .. 1 aatttcgatt caaattcacc cgtacctccg gagctcgatc cggaccctgc 51 gggacttggt gtaaatccca accagatggt tgctctacgc ccatagtatc 101 aatacaacat gtcgagactc ggagctagct tcaagtcctt gactttcgct 151 gtacgcagcg attacataat ttcgcgcatc tggcgcgcct ttaataccgt 201 tggagtcctg cacttcttcg gcactgatac aaccactacg gtggttaagg 251 agttttcggc tgctgggccg atcgtccctt tacggaaatc ctgttttccg 301 ttctctgttc gcgctgctgt tcgcgcgatt taagctgccg gacgtcctat 351 tgacgctccg cgctccggat gcctctgtgg cctccctgtt ttcgacacat 401 ctggtgtcgc gcgtccccgc tctgttgcgg gcgcttggag gtatgctctg 451 tgtaaacctc cccttactgc tgccgccaag aagtccattc gcaaggcgaa 501 gaaagattct gcattctttc tcagccgggc ttcttctctc ttctctcggg 551 aagtcccctg cggcacgcgt cacagacttc gcaggcgtgt tgcgaaacta 601 gttgacccta ctgtgcgtga aagtccccaa gacaagacta aacttaaggg 651 gcgccgatat ggcaaaaatt ctgacctccc gtatatgggg gaagcggcgt 701 tggatgacat ccttcgctgg attgaggggg taaatcctcc gccgtcgatg 751 gtcgccgttc cggtgcccat ctcttttggc actctgccca ctacggcttg 801 gtgctctgag gccgacgccg ctgttctgcg gtgtcgctta gactatcacg 851 ccgctgcgac ttcctttcgt aatgaaggga agcacgtgag atacgtctat 901 aatgacgtgt cttccgctgc caaccgtcct cgtacggttt ctccccgcaa 951 gtgcgggcgt attttttcca gcggttctgc gctgggtgtt gaggttccaa 1001 gtactaggga ccgccacacc gctttcgtga gatctactca cgctagcgtt 1051 ttcttttctg acgcggttcg ccgcgttcga atgttccgtc ctgggcggaa 1101 taatttcttt actagcgtcg tcagtgggcg gcgcgttagt tactttagac 1151 ccggacctaa cggtacggtg tctgttctaa tgtcggatgg cgtcaatacg 1201 gcgcgtctcg acgttgtcgc tcccgcgtac tatgcgtacg caaaaacgtt 1251 gggcgccaga gtgcgctgtt tgtgggagtc gtccgatttg gacgatgcta 1301 aaatacgtga cggtcaatgc tacattcgtc acgtgtacga cgtggcccta 1351 tattttggga ggcgcgtcga cctttctgtg cgccgcactt tgggtttatt 1401 ccccacagtg ggtgcgttaa aggcttatct tgttcgcgag tatggttttg 1451 tacaccaagg aaaggcaatt ggcggtcgat ttagccgctg aaagggagaa 1501 ggcgagactg gctcgtagac acccaatacg ttctccggaa gaaactccgg 1551 aacattataa attcggtatg actgctaagg caatgttacc ggacatcaac 1601 gccgtagacg ttggtgataa cgaggaaact tcgtcggagt acccagtgag 1651 tctgagtgtt tctggcggag ttctccgtga acaccacttc atctgattga 1701 agtggacgga ataagttcct tgcggaactt taagtcgggt tggtaaaaac 1751 cctttatgat ggtgatgtat cactagacaa taaccggatg ggtaaagtct 1801 ttaaaatgat cgaggggaaa attaaccgta tcctctcgtt ggtctaagct 1851 cccacagagt ggtagtggtc tcaagtgagg cttaacgtat gcgtgaacca 1901 aagaagttct ccttagagtg tgtgttgttt acccaacaca ctgtccctat 1951 ggggggccaa cataggtcca