Sequence of DPV Citrus tristeza virus
Citrus tristeza virus defective RNA, strain T317
ACC No: Y18369
Dated: 2006-11-14 | Length: 1970 | CRC: 864023902
ID Y18369; SV 1; linear; genomic RNA; STD; VRL; 1970 BP.
XX
AC Y18369;
XX
DT 11-DEC-1998 (Rel. 58, Created)
DT 14-NOV-2006 (Rel. 89, Last updated, Version 4)
XX
DE Citrus tristeza virus defective RNA, strain T317
XX
KW defective variant.
XX
OS Citrus tristeza virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae;
OC Closterovirus.
XX
RN [1]
RX PUBMED; 10092024.
RA Ayllon M.A., Lopez C., Navas-Castillo J., Mawassi M., Dawson W.O.,
RA Guerri J., Flores R., Moreno P.;
RT "New defective RNAs from citrus tristeza virus: evidence for a
RT replicase-driven template switching mechanism in their generation.";
RL J. Gen. Virol. 80:817-821(1999).
XX
RN [2]
RP 1-1970
RA Moreno P.;
RT ;
RL Submitted (05-NOV-1998) to the EMBL/GenBank/DDBJ databases.
RL P. Moreno, Instituto Valenciano de Investigaciones Agrarias, Apartado
RL Oficial 46113 Moncada, Valencia, SPAIN
XX
CC Related sequence Y16841
XX
FH Key Location/Qualifiers
FH
FT source 1. .1970
FT /organism="Citrus tristeza virus"
FT /specific_host="citrus"
FT /strain="T317 from Spain"
FT /mol_type="genomic RNA"
FT /note="CTV(T317) D-RNA 1.9 kb"
FT /db_xref="taxon:12162"
FT 5'UTR <1. .108
FT CDS 109. .333
FT /note="ORF"
FT /db_xref="UniProtKB/TrEMBL:Q9YN94"
FT /protein_id="CAA77148.1"
FT /translation="MSRLGASFKSLTFAVRSDYIISRIWRAFNTVGVLHFFGTDTTTTV
FT VKEFSAAGPIVPLRKSCFPFSVRAAVRAI"
FT misc_feature 1443. .1446
FT /note="junction site"
FT /experiment="experimental evidence, no additional details
FT recorded"
FT variation 77
FT /replace="c"
FT /note="in full length T317"
FT variation 96
FT /replace="a"
FT /note="in full length T317"
FT variation 116
FT /replace="a"
FT /note="in full length T317"
FT variation 328
FT /replace="t"
FT /note="in full length T317"
FT variation 331
FT /replace="a"
FT /note="in full length T317"
FT variation 410
FT /replace="t"
FT /note="in full length T317"
FT variation 967
FT /replace="c"
FT /note="in full length T317"
FT variation 1113
FT /replace="c"
FT /note="in full length T317"
FT variation 1502
FT /replace="a"
FT /note="in full length T317"
XX
SQ Sequence 1970 BP; 399 A; 513 C; 527 G; 531 T; 0 other;
y18369 Length: 1970 14-NOV-2006 Type: N Check: 8768 ..
1 aatttcgatt caaattcacc cgtacctccg gagctcgatc cggaccctgc
51 gggacttggt gtaaatccca accagatggt tgctctacgc ccatagtatc
101 aatacaacat gtcgagactc ggagctagct tcaagtcctt gactttcgct
151 gtacgcagcg attacataat ttcgcgcatc tggcgcgcct ttaataccgt
201 tggagtcctg cacttcttcg gcactgatac aaccactacg gtggttaagg
251 agttttcggc tgctgggccg atcgtccctt tacggaaatc ctgttttccg
301 ttctctgttc gcgctgctgt tcgcgcgatt taagctgccg gacgtcctat
351 tgacgctccg cgctccggat gcctctgtgg cctccctgtt ttcgacacat
401 ctggtgtcgc gcgtccccgc tctgttgcgg gcgcttggag gtatgctctg
451 tgtaaacctc cccttactgc tgccgccaag aagtccattc gcaaggcgaa
501 gaaagattct gcattctttc tcagccgggc ttcttctctc ttctctcggg
551 aagtcccctg cggcacgcgt cacagacttc gcaggcgtgt tgcgaaacta
601 gttgacccta ctgtgcgtga aagtccccaa gacaagacta aacttaaggg
651 gcgccgatat ggcaaaaatt ctgacctccc gtatatgggg gaagcggcgt
701 tggatgacat ccttcgctgg attgaggggg taaatcctcc gccgtcgatg
751 gtcgccgttc cggtgcccat ctcttttggc actctgccca ctacggcttg
801 gtgctctgag gccgacgccg ctgttctgcg gtgtcgctta gactatcacg
851 ccgctgcgac ttcctttcgt aatgaaggga agcacgtgag atacgtctat
901 aatgacgtgt cttccgctgc caaccgtcct cgtacggttt ctccccgcaa
951 gtgcgggcgt attttttcca gcggttctgc gctgggtgtt gaggttccaa
1001 gtactaggga ccgccacacc gctttcgtga gatctactca cgctagcgtt
1051 ttcttttctg acgcggttcg ccgcgttcga atgttccgtc ctgggcggaa
1101 taatttcttt actagcgtcg tcagtgggcg gcgcgttagt tactttagac
1151 ccggacctaa cggtacggtg tctgttctaa tgtcggatgg cgtcaatacg
1201 gcgcgtctcg acgttgtcgc tcccgcgtac tatgcgtacg caaaaacgtt
1251 gggcgccaga gtgcgctgtt tgtgggagtc gtccgatttg gacgatgcta
1301 aaatacgtga cggtcaatgc tacattcgtc acgtgtacga cgtggcccta
1351 tattttggga ggcgcgtcga cctttctgtg cgccgcactt tgggtttatt
1401 ccccacagtg ggtgcgttaa aggcttatct tgttcgcgag tatggttttg
1451 tacaccaagg aaaggcaatt ggcggtcgat ttagccgctg aaagggagaa
1501 ggcgagactg gctcgtagac acccaatacg ttctccggaa gaaactccgg
1551 aacattataa attcggtatg actgctaagg caatgttacc ggacatcaac
1601 gccgtagacg ttggtgataa cgaggaaact tcgtcggagt acccagtgag
1651 tctgagtgtt tctggcggag ttctccgtga acaccacttc atctgattga
1701 agtggacgga ataagttcct tgcggaactt taagtcgggt tggtaaaaac
1751 cctttatgat ggtgatgtat cactagacaa taaccggatg ggtaaagtct
1801 ttaaaatgat cgaggggaaa attaaccgta tcctctcgtt ggtctaagct
1851 cccacagagt ggtagtggtc tcaagtgagg cttaacgtat gcgtgaacca
1901 aagaagttct ccttagagtg tgtgttgttt acccaacaca ctgtccctat
1951 ggggggccaa cataggtcca