Sequence of DPV Citrus tristeza virus
Citrus tristeza virus defective RNA, strain T32
ACC No: Y18371
Dated: 2006-11-14 | Length: 2104 | CRC: 989365215
ID Y18371; SV 1; linear; genomic RNA; STD; VRL; 2104 BP.
XX
AC Y18371;
XX
DT 11-DEC-1998 (Rel. 58, Created)
DT 14-NOV-2006 (Rel. 89, Last updated, Version 4)
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DE Citrus tristeza virus defective RNA, strain T32
XX
KW defective variant.
XX
OS Citrus tristeza virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae;
OC Closterovirus.
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RN [1]
RX PUBMED; 10092024.
RA Ayllon M.A., Lopez C., Navas-Castillo J., Mawassi M., Dawson W.O.,
RA Guerri J., Flores R., Moreno P.;
RT "New defective RNAs from citrus tristeza virus: evidence for a
RT replicase-driven template switching mechanism in their generation.";
RL J. Gen. Virol. 80:817-821(1999).
XX
RN [2]
RP 1-2104
RA Moreno P.;
RT ;
RL Submitted (05-NOV-1998) to the EMBL/GenBank/DDBJ databases.
RL P. Moreno, Instituto Valenciano de Investigaciones Agrarias, Apartado
RL Oficial 46113 Moncada, Valencia, SPAIN
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FH Key Location/Qualifiers
FH
FT source 1. .2104
FT /organism="Citrus tristeza virus"
FT /specific_host="citrus"
FT /strain="T32 from Spain"
FT /mol_type="genomic RNA"
FT /note="CTV(T32) D-RNA 2.1 kb"
FT /db_xref="taxon:12162"
FT 5'UTR <1. .108
FT CDS 109. .195
FT /note="ORF"
FT /db_xref="UniProtKB/TrEMBL:Q9YN93"
FT /protein_id="CAA77150.1"
FT /translation="MTKLGASFKSSTFAVRSDYIISRIWRAL"
FT misc_feature 1373. .1374
FT /note="junction site"
FT /experiment="experimental evidence, no additional details
FT recorded"
FT variation 77
FT /replace="c"
FT /note="in full length T32"
FT variation 83
FT /replace="c"
FT /note="in full length T32"
FT variation 89
FT /replace="g"
FT /note="in full length T32"
FT variation 112
FT /replace="t"
FT /note="in full length T32"
FT variation 140
FT /replace="t"
FT /note="in full length T32"
FT variation 178. .180
FT /replace="cc"
FT /note="in full length T32"
FT variation 309
FT /replace="t"
FT /note="in full length T32"
FT variation 653
FT /replace="c"
FT /note="in full length T32"
FT variation 735
FT /replace="t"
FT /note="in full length T32"
FT variation 832
FT /replace="g"
FT /note="in full length T32"
FT variation 1114
FT /replace="c"
FT /note="in full length T32"
FT variation 1197
FT /replace="g"
FT /note="in full length T32"
FT variation 1284
FT /replace="c"
FT /note="in full length T32"
FT variation 2075
FT /replace="c"
FT /note="in full length T32"
XX
SQ Sequence 2104 BP; 461 A; 532 C; 557 G; 554 T; 0 other;
y18371 Length: 2104 14-NOV-2006 Type: N Check: 4111 ..
1 aatttcgatt caaattcacc cgtacctccg gagctcgatc cggaccctgc
51 gggacttggt gtaaatccca accagatggt tgttctacac ccataatatc
101 aatacaacat gacgaaactc ggagctagct tcaagtcctc gactttcgct
151 gtacgcagcg attacataat ttcgcgcatc tggcgcgccc tttaataccg
201 ttggagtcct gcacttcttc ggcactgata caaccactac ggtggttaag
251 gagttttcgg ctgctgggcc gatcgtccct ttacggaaat cctgttttcc
301 gttctctgct cgcgctgctg ttcgcgcgat taaagctgcc ggacgtccta
351 ttgacgctcc gcgctccgga tgcctctgtg gcctccctgt tttcgacaca
401 tctggtgtcg tgcgtccccg ctctgttgcg ggcgcttgga ggtatgctct
451 gtgtaaacct ccccttactg ctgccgccaa gaagtccatt cgcaaggcga
501 agaaagattc tgcattcttt ctcagccggg cttcttctct cttctctcgg
551 gaagtcccct gcggcacgcg tcacagactt cgcaggcgtg ttgcgaaact
601 agttgaccct actgtgcgtg aaagtcccca agacaagact aaacttaagg
651 ggtgccgata tggcaaaaat tctgacctcc cgtatatggg ggaagcggcg
701 ttggatgaca tccttcgctg gattgagggg gtaaatcctc cgccgtcgat
751 ggtcgccgtt ccggtgccca tctcttttgg cactctgccc actacggctt
801 ggtgctctga ggccgacgcc gctgttctgc gatgtcgctt agactatcac
851 gccgctgcga cttcctttcg taatgaaggg aagcacgtga gatacgtcta
901 taatgacgtg tcttccgctg ccaaccgtcc tcgtacggtt tctccccgca
951 agtgcgggcg tatttttccc agcggttctg cgctgggtgt tgaggttcca
1001 agtactaggg accgccacac cgctttcgtg agatctactc acgctagcgt
1051 tttcttttct gacgcggttc gccgcgttcg aatgttccgt cctgggcgga
1101 ataatttctt tactagcgtc gtcagtgggc ggcgcgttag ttactttaga
1151 cccggaccta acggtacggt gtctgttcta atgtcggatg gcgtcaatac
1201 ggcgcgtctc gacgttgtcg ctcccgcgta ctatgcgtac gcaaaaacgt
1251 tgggcgccag agtgcgctgt ttgtgggagt cgttcgattt ggacgatgct
1301 aaaatacgtg acggtcaatg ctacattcgt cacgtgtacg acgtggccct
1351 atattttggg aggcgcgtcg acctcgcttt cgcgcaagaa taataggagt
1401 gtgcgtggat tgtggtagaa aacacgacaa ggcgctcaag actgaacgta
1451 agtgtaaggt caacaatacg caatctcaga acgaggtggc gcatatgttg
1501 atgcacgatc ccgttaagta tttgaacaaa agaaaggcta gagccttttc
1551 taacgcagag atgtttgcga ttgaattggt tttgtacacc aaggaaaggc
1601 aattggcggt cgatttagcc gctgaaaggg agaagacgag actggctcgt
1651 agacacccaa tacgttctcc ggaagaaact ccggaacatt ataaattcgg
1701 tatgactgct aaggcaatgt taccggacat caacgccgta gacgttggtg
1751 ataacgagga aacttcgtcg gagtacccag tgagtctgag tgtttctggc
1801 ggagttctcc gtgaacacca cttcatctga ttgaagtgga cggaataagt
1851 tccttgcgga actttaagtc gggttggtaa aaacccttta tgatggtgat
1901 gtatcactag acaataaccg gatgggtaaa gtctttaaaa tgatcgaggg
1951 gaaaattaac cgtatcctct cgttggtcta agctcccaca gagtggtagt
2001 ggtctcaagt gaggcttaac gtatgcgtga accaaagaag ttctccttag
2051 agtgtgtgtt gtttacccaa cacattgtcc ctatgggggg ccaacatagg
2101 tcca