Sequence of DPV Citrus tristeza virus
Citrus tristeza virus defective RNA, strain T32
ACC No: Y18371
Dated: 2006-11-14 | Length: 2104 | CRC: 989365215
ID Y18371; SV 1; linear; genomic RNA; STD; VRL; 2104 BP. XX AC Y18371; XX DT 11-DEC-1998 (Rel. 58, Created) DT 14-NOV-2006 (Rel. 89, Last updated, Version 4) XX DE Citrus tristeza virus defective RNA, strain T32 XX KW defective variant. XX OS Citrus tristeza virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae; OC Closterovirus. XX RN [1] RX PUBMED; 10092024. RA Ayllon M.A., Lopez C., Navas-Castillo J., Mawassi M., Dawson W.O., RA Guerri J., Flores R., Moreno P.; RT "New defective RNAs from citrus tristeza virus: evidence for a RT replicase-driven template switching mechanism in their generation."; RL J. Gen. Virol. 80:817-821(1999). XX RN [2] RP 1-2104 RA Moreno P.; RT ; RL Submitted (05-NOV-1998) to the EMBL/GenBank/DDBJ databases. RL P. Moreno, Instituto Valenciano de Investigaciones Agrarias, Apartado RL Oficial 46113 Moncada, Valencia, SPAIN XX FH Key Location/Qualifiers FH FT source 1. .2104 FT /organism="Citrus tristeza virus" FT /specific_host="citrus" FT /strain="T32 from Spain" FT /mol_type="genomic RNA" FT /note="CTV(T32) D-RNA 2.1 kb" FT /db_xref="taxon:12162" FT 5'UTR <1. .108 FT CDS 109. .195 FT /note="ORF" FT /db_xref="UniProtKB/TrEMBL:Q9YN93" FT /protein_id="CAA77150.1" FT /translation="MTKLGASFKSSTFAVRSDYIISRIWRAL" FT misc_feature 1373. .1374 FT /note="junction site" FT /experiment="experimental evidence, no additional details FT recorded" FT variation 77 FT /replace="c" FT /note="in full length T32" FT variation 83 FT /replace="c" FT /note="in full length T32" FT variation 89 FT /replace="g" FT /note="in full length T32" FT variation 112 FT /replace="t" FT /note="in full length T32" FT variation 140 FT /replace="t" FT /note="in full length T32" FT variation 178. .180 FT /replace="cc" FT /note="in full length T32" FT variation 309 FT /replace="t" FT /note="in full length T32" FT variation 653 FT /replace="c" FT /note="in full length T32" FT variation 735 FT /replace="t" FT /note="in full length T32" FT variation 832 FT /replace="g" FT /note="in full length T32" FT variation 1114 FT /replace="c" FT /note="in full length T32" FT variation 1197 FT /replace="g" FT /note="in full length T32" FT variation 1284 FT /replace="c" FT /note="in full length T32" FT variation 2075 FT /replace="c" FT /note="in full length T32" XX SQ Sequence 2104 BP; 461 A; 532 C; 557 G; 554 T; 0 other; y18371 Length: 2104 14-NOV-2006 Type: N Check: 4111 .. 1 aatttcgatt caaattcacc cgtacctccg gagctcgatc cggaccctgc 51 gggacttggt gtaaatccca accagatggt tgttctacac ccataatatc 101 aatacaacat gacgaaactc ggagctagct tcaagtcctc gactttcgct 151 gtacgcagcg attacataat ttcgcgcatc tggcgcgccc tttaataccg 201 ttggagtcct gcacttcttc ggcactgata caaccactac ggtggttaag 251 gagttttcgg ctgctgggcc gatcgtccct ttacggaaat cctgttttcc 301 gttctctgct cgcgctgctg ttcgcgcgat taaagctgcc ggacgtccta 351 ttgacgctcc gcgctccgga tgcctctgtg gcctccctgt tttcgacaca 401 tctggtgtcg tgcgtccccg ctctgttgcg ggcgcttgga ggtatgctct 451 gtgtaaacct ccccttactg ctgccgccaa gaagtccatt cgcaaggcga 501 agaaagattc tgcattcttt ctcagccggg cttcttctct cttctctcgg 551 gaagtcccct gcggcacgcg tcacagactt cgcaggcgtg ttgcgaaact 601 agttgaccct actgtgcgtg aaagtcccca agacaagact aaacttaagg 651 ggtgccgata tggcaaaaat tctgacctcc cgtatatggg ggaagcggcg 701 ttggatgaca tccttcgctg gattgagggg gtaaatcctc cgccgtcgat 751 ggtcgccgtt ccggtgccca tctcttttgg cactctgccc actacggctt 801 ggtgctctga ggccgacgcc gctgttctgc gatgtcgctt agactatcac 851 gccgctgcga cttcctttcg taatgaaggg aagcacgtga gatacgtcta 901 taatgacgtg tcttccgctg ccaaccgtcc tcgtacggtt tctccccgca 951 agtgcgggcg tatttttccc agcggttctg cgctgggtgt tgaggttcca 1001 agtactaggg accgccacac cgctttcgtg agatctactc acgctagcgt 1051 tttcttttct gacgcggttc gccgcgttcg aatgttccgt cctgggcgga 1101 ataatttctt tactagcgtc gtcagtgggc ggcgcgttag ttactttaga 1151 cccggaccta acggtacggt gtctgttcta atgtcggatg gcgtcaatac 1201 ggcgcgtctc gacgttgtcg ctcccgcgta ctatgcgtac gcaaaaacgt 1251 tgggcgccag agtgcgctgt ttgtgggagt cgttcgattt ggacgatgct 1301 aaaatacgtg acggtcaatg ctacattcgt cacgtgtacg acgtggccct 1351 atattttggg aggcgcgtcg acctcgcttt cgcgcaagaa taataggagt 1401 gtgcgtggat tgtggtagaa aacacgacaa ggcgctcaag actgaacgta 1451 agtgtaaggt caacaatacg caatctcaga acgaggtggc gcatatgttg 1501 atgcacgatc ccgttaagta tttgaacaaa agaaaggcta gagccttttc 1551 taacgcagag atgtttgcga ttgaattggt tttgtacacc aaggaaaggc 1601 aattggcggt cgatttagcc gctgaaaggg agaagacgag actggctcgt 1651 agacacccaa tacgttctcc ggaagaaact ccggaacatt ataaattcgg 1701 tatgactgct aaggcaatgt taccggacat caacgccgta gacgttggtg 1751 ataacgagga aacttcgtcg gagtacccag tgagtctgag tgtttctggc 1801 ggagttctcc gtgaacacca cttcatctga ttgaagtgga cggaataagt 1851 tccttgcgga actttaagtc gggttggtaa aaacccttta tgatggtgat 1901 gtatcactag acaataaccg gatgggtaaa gtctttaaaa tgatcgaggg 1951 gaaaattaac cgtatcctct cgttggtcta agctcccaca gagtggtagt 2001 ggtctcaagt gaggcttaac gtatgcgtga accaaagaag ttctccttag 2051 agtgtgtgtt gtttacccaa cacattgtcc ctatgggggg ccaacatagg 2101 tcca