Sequence of DPV Citrus tristeza virus

Citrus tristeza virus defective RNA, strain T32

ACC No: Y18371

Dated: 2006-11-14 | Length: 2104 | CRC: 989365215

                
ID   Y18371; SV 1; linear; genomic RNA; STD; VRL; 2104 BP.
XX
AC   Y18371;
XX
DT   11-DEC-1998 (Rel. 58, Created)
DT   14-NOV-2006 (Rel. 89, Last updated, Version 4)
XX
DE   Citrus tristeza virus defective RNA, strain T32
XX
KW   defective variant.
XX
OS   Citrus tristeza virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae;
OC   Closterovirus.
XX
RN   [1]
RX   PUBMED; 10092024.
RA   Ayllon M.A., Lopez C., Navas-Castillo J., Mawassi M., Dawson W.O.,
RA   Guerri J., Flores R., Moreno P.;
RT   "New defective RNAs from citrus tristeza virus: evidence for a
RT   replicase-driven template switching mechanism in their generation.";
RL   J. Gen. Virol. 80:817-821(1999).
XX
RN   [2]
RP   1-2104
RA   Moreno P.;
RT   ;
RL   Submitted (05-NOV-1998) to the EMBL/GenBank/DDBJ databases.
RL   P. Moreno, Instituto Valenciano de Investigaciones Agrarias, Apartado
RL   Oficial 46113 Moncada, Valencia, SPAIN
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2104
FT                   /organism="Citrus tristeza virus"
FT                   /specific_host="citrus"
FT                   /strain="T32 from Spain"
FT                   /mol_type="genomic RNA"
FT                   /note="CTV(T32) D-RNA 2.1 kb"
FT                   /db_xref="taxon:12162"
FT   5'UTR           <1. .108
FT   CDS             109. .195
FT                   /note="ORF"
FT                   /db_xref="UniProtKB/TrEMBL:Q9YN93"
FT                   /protein_id="CAA77150.1"
FT                   /translation="MTKLGASFKSSTFAVRSDYIISRIWRAL"
FT   misc_feature    1373. .1374
FT                   /note="junction site"
FT                   /experiment="experimental evidence, no additional details
FT                   recorded"
FT   variation       77
FT                   /replace="c"
FT                   /note="in full length T32"
FT   variation       83
FT                   /replace="c"
FT                   /note="in full length T32"
FT   variation       89
FT                   /replace="g"
FT                   /note="in full length T32"
FT   variation       112
FT                   /replace="t"
FT                   /note="in full length T32"
FT   variation       140
FT                   /replace="t"
FT                   /note="in full length T32"
FT   variation       178. .180
FT                   /replace="cc"
FT                   /note="in full length T32"
FT   variation       309
FT                   /replace="t"
FT                   /note="in full length T32"
FT   variation       653
FT                   /replace="c"
FT                   /note="in full length T32"
FT   variation       735
FT                   /replace="t"
FT                   /note="in full length T32"
FT   variation       832
FT                   /replace="g"
FT                   /note="in full length T32"
FT   variation       1114
FT                   /replace="c"
FT                   /note="in full length T32"
FT   variation       1197
FT                   /replace="g"
FT                   /note="in full length T32"
FT   variation       1284
FT                   /replace="c"
FT                   /note="in full length T32"
FT   variation       2075
FT                   /replace="c"
FT                   /note="in full length T32"
XX
SQ   Sequence 2104 BP; 461 A; 532 C; 557 G; 554 T; 0 other;

y18371 Length: 2104  14-NOV-2006  Type: N  Check: 4111  ..

       1  aatttcgatt caaattcacc cgtacctccg gagctcgatc cggaccctgc
      51  gggacttggt gtaaatccca accagatggt tgttctacac ccataatatc
     101  aatacaacat gacgaaactc ggagctagct tcaagtcctc gactttcgct
     151  gtacgcagcg attacataat ttcgcgcatc tggcgcgccc tttaataccg
     201  ttggagtcct gcacttcttc ggcactgata caaccactac ggtggttaag
     251  gagttttcgg ctgctgggcc gatcgtccct ttacggaaat cctgttttcc
     301  gttctctgct cgcgctgctg ttcgcgcgat taaagctgcc ggacgtccta
     351  ttgacgctcc gcgctccgga tgcctctgtg gcctccctgt tttcgacaca
     401  tctggtgtcg tgcgtccccg ctctgttgcg ggcgcttgga ggtatgctct
     451  gtgtaaacct ccccttactg ctgccgccaa gaagtccatt cgcaaggcga
     501  agaaagattc tgcattcttt ctcagccggg cttcttctct cttctctcgg
     551  gaagtcccct gcggcacgcg tcacagactt cgcaggcgtg ttgcgaaact
     601  agttgaccct actgtgcgtg aaagtcccca agacaagact aaacttaagg
     651  ggtgccgata tggcaaaaat tctgacctcc cgtatatggg ggaagcggcg
     701  ttggatgaca tccttcgctg gattgagggg gtaaatcctc cgccgtcgat
     751  ggtcgccgtt ccggtgccca tctcttttgg cactctgccc actacggctt
     801  ggtgctctga ggccgacgcc gctgttctgc gatgtcgctt agactatcac
     851  gccgctgcga cttcctttcg taatgaaggg aagcacgtga gatacgtcta
     901  taatgacgtg tcttccgctg ccaaccgtcc tcgtacggtt tctccccgca
     951  agtgcgggcg tatttttccc agcggttctg cgctgggtgt tgaggttcca
    1001  agtactaggg accgccacac cgctttcgtg agatctactc acgctagcgt
    1051  tttcttttct gacgcggttc gccgcgttcg aatgttccgt cctgggcgga
    1101  ataatttctt tactagcgtc gtcagtgggc ggcgcgttag ttactttaga
    1151  cccggaccta acggtacggt gtctgttcta atgtcggatg gcgtcaatac
    1201  ggcgcgtctc gacgttgtcg ctcccgcgta ctatgcgtac gcaaaaacgt
    1251  tgggcgccag agtgcgctgt ttgtgggagt cgttcgattt ggacgatgct
    1301  aaaatacgtg acggtcaatg ctacattcgt cacgtgtacg acgtggccct
    1351  atattttggg aggcgcgtcg acctcgcttt cgcgcaagaa taataggagt
    1401  gtgcgtggat tgtggtagaa aacacgacaa ggcgctcaag actgaacgta
    1451  agtgtaaggt caacaatacg caatctcaga acgaggtggc gcatatgttg
    1501  atgcacgatc ccgttaagta tttgaacaaa agaaaggcta gagccttttc
    1551  taacgcagag atgtttgcga ttgaattggt tttgtacacc aaggaaaggc
    1601  aattggcggt cgatttagcc gctgaaaggg agaagacgag actggctcgt
    1651  agacacccaa tacgttctcc ggaagaaact ccggaacatt ataaattcgg
    1701  tatgactgct aaggcaatgt taccggacat caacgccgta gacgttggtg
    1751  ataacgagga aacttcgtcg gagtacccag tgagtctgag tgtttctggc
    1801  ggagttctcc gtgaacacca cttcatctga ttgaagtgga cggaataagt
    1851  tccttgcgga actttaagtc gggttggtaa aaacccttta tgatggtgat
    1901  gtatcactag acaataaccg gatgggtaaa gtctttaaaa tgatcgaggg
    1951  gaaaattaac cgtatcctct cgttggtcta agctcccaca gagtggtagt
    2001  ggtctcaagt gaggcttaac gtatgcgtga accaaagaag ttctccttag
    2051  agtgtgtgtt gtttacccaa cacattgtcc ctatgggggg ccaacatagg
    2101  tcca