Plant Virus and Viroid Sequences


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Uganda S virus (UGSV) - Flavivirus

  • DQ859065 Uganda S virus polyprotein gene, complete cds.

Ugandan cassava brown streak virus (UCBSV) - Ipomovirus

  • EU916825 Cassava brown streak virus isolate MLB3 coat protein gene, partial cds.
  • EU916826 Cassava brown streak virus isolate MLB9 coat protein gene, partial cds.
  • EU916827 Cassava brown streak virus isolate NTG10 coat protein gene, partial cds.
  • EU916828 Cassava brown streak virus isolate HMA9 coat protein gene, partial cds.
  • EU916829 Cassava brown streak virus isolate LWR2 coat protein gene, partial cds.
  • EU916830 Cassava brown streak virus isolate IGA8 coat protein gene, partial cds.
  • EU916831 Cassava brown streak virus isolate BSA2 coat protein gene, partial cds.
  • EU916832 Cassava brown streak virus isolate BSA4 coat protein gene, partial cds.
  • FJ025998 Cassava brown streak virus isolate MLB9 polyprotein (pol) gene, partial cds.
  • FJ025999 Cassava brown streak virus isolate LWR2 polyprotein (pol) gene, partial cds.
  • FJ026000 Cassava brown streak virus isolate IGA8 polyprotein (pol) gene, partial cds.
  • FJ026001 Cassava brown streak virus isolate BSA4 polyprotein (pol) gene, partial cds.
  • FJ026002 Cassava brown streak virus isolate NTG10 polyprotein (pol) gene, partial cds.
  • FJ039520 Ugandan cassava brown streak virus isolate MLB3, complete genome.
  • FJ039521 Cassava brown streak virus isolate HMA9 polyprotein (pol) gene, partial cds.
  • FJ039522 Cassava brown streak virus isolate BSA2 polyprotein (pol) gene, partial cds.
  • FJ185044 Ugandan cassava brown streak virus strain Ugandan, complete genome.
  • FN433930 Ugandan cassava brown streak virus gene for polyprotein, genomic RNA, isolate Ke_125
  • FN433931 Ugandan cassava brown streak virus gene for polyprotein, genomic RNA, isolate Ke_54
  • FN433932 Ugandan cassava brown streak virus gene for polyprotein, genomic RNA, isolate Ma_42
  • FN433933 Ugandan cassava brown streak virus gene for polyprotein, genomic RNA, isolate Ma_43
  • FN434109 Ugandan cassava brown streak virus, complete genome, isolate Ug_23
  • GQ169760 Cassava brown streak virus strain Ugandan isolate TanC9 Ham1-like protein gene, partial cds.
  • GQ169761 Cassava brown streak virus strain Ugandan isolate TanT8 Ham1-like protein gene, partial cds.
  • GU205818 Cassava brown streak virus isolate Tan AB2 Ham 1-like protein gene, partial cds.
  • GU205819 Cassava brown streak virus isolate Ug A19/27 Ham 1-like protein gene, partial cds.
  • GU205820 Cassava brown streak virus isolate Ken B16 Ham 1-like protein gene, partial cds.
  • HM171297 Cassava brown streak Uganda virus-[Malawi:Karonga 10D:2009] coat protein gene, partial cds.
  • HM171298 Cassava brown streak Uganda virus-[Malawi:Karonga 18:2009] coat protein gene, partial cds.
  • HM171299 Cassava brown streak Uganda virus-[Malawi:Rumphi 27:2009] coat protein gene, partial cds.
  • HM171300 Cassava brown streak Uganda virus-[Malawi:Zomba 1:2009] coat protein gene, partial cds.
  • HM171301 Cassava brown streak Uganda virus-[Malawi:Machinga 5:2009] coat protein gene, partial cds.
  • HM171302 Cassava brown streak Uganda virus-[Malawi:Machinga 6:2009] coat protein gene, partial cds.
  • HM171303 Cassava brown streak Uganda virus-[Malawi:Nkhata 29:2009] coat protein gene, partial cds.
  • HM171304 Cassava brown streak Uganda virus-[Malawi:Nkhata 33:2009] coat protein gene, partial cds.
  • HM171305 Cassava brown streak Uganda virus-[Malawi:Nkhotakota 42:2009] coat protein gene, partial cds.
  • HM171306 Cassava brown streak Uganda virus-[Malawi:Salima 60:2009] coat protein gene, partial cds.
  • HM171307 Cassava brown streak Uganda virus-[MW:Mangochi 66:2009] coat protein gene, partial cds.
  • HM171308 Cassava brown streak Uganda virus-[Uganda:Busia 2:2009] coat protein gene, partial cds.
  • HM171309 Cassava brown streak Uganda virus-[Uganda:Busia 6:2009] coat protein gene, partial cds.
  • HM171310 Cassava brown streak Uganda virus-[Uganda:Busia 14:2009] coat protein gene, partial cds.
  • HM171311 Cassava brown streak Uganda virus-[Uganda:Rakai 31:2009] coat protein gene, partial cds.
  • HM171314 Cassava brown streak Uganda virus-[Uganda:Wakiso 40:2009] coat protein gene, partial cds.
  • HM171315 Cassava brown streak Uganda virus-[Uganda:Njule 16:2004] coat protein gene, partial cds.
  • HM171316 Cassava brown streak Uganda virus-[Uganda:TO4-42:2004] coat protein gene, partial cds.
  • HM171317 Cassava brown streak Uganda virus-[Uganda:EBW60:2004] coat protein gene, partial cds.
  • HM171318 Cassava brown streak Uganda virus-[Uganda:0057-50:2004] coat protein gene, partial cds.
  • HM181930 Ugandan cassava brown streak virus strain UG[Uganda:Namulonge:2004], complete genome.

Umatilla virus (UMAV) - Orbivirus

  • HQ842619 Umatilla virus isolate USA1969/01 segment 1, complete sequence.
  • HQ842620 Umatilla virus isolate USA1969/01 segment 2, complete sequence.
  • HQ842621 Umatilla virus isolate USA1969/01 segment 3, complete sequence.
  • HQ842622 Umatilla virus isolate USA1969/01 segment 4, complete sequence.
  • HQ842623 Umatilla virus isolate USA1969/01 segment 5, complete sequence.
  • HQ842624 Umatilla virus isolate USA1969/01 segment 6, complete sequence.
  • HQ842625 Umatilla virus isolate USA1969/01 segment 7, complete sequence.
  • HQ842626 Umatilla virus isolate USA1969/01 segment 8, complete sequence.
  • HQ842627 Umatilla virus isolate USA1969/01 segment 9, complete sequence.
  • HQ842628 Umatilla virus isolate USA1969/01 segment 10, complete sequence.

Unnamed Anoda begomovirus () - Begomovirus

  • DQ318926 Anoda geminivirus Yucatan coat protein (AV1) gene, complete cds.

Unnamed bean begomovirus () - Begomovirus

  • DQ914441 China bean begomovirus pre-coat protein (AV2) gene, complete cds; and coat protein (AV1) gene, partial cds.

Unnamed Chinese phlebovirus () - Phlebovirus

  • JQ341188 Phlebovirus WCH/97/HN/China/2011 L protein gene, complete cds.
  • JQ341189 Phlebovirus WCH/97/HN/China/2011 membrane glycoprotein polyprotein gene, complete cds.
  • JQ341190 Phlebovirus WCH/97/HN/China/2011 nonstructural protein and nucleocapsid protein genes, complete cds.

Unnamed citrus idaeovirus () - Idaeovirus

  • DQ100358 Citrus idaeovirus movement protein gene, partial cds; and capsid protein gene, complete cds.

Unnamed cucurbit begomovirus () - Begomovirus

  • EU366164 Cucurbita pepo begomovirus - Gorakhpur coat protein (AV1) gene, complete cds.

Unnamed grapevine chrysovirus () - Chrysovirus

  • JX658567 Grapevine chrysovirus isolate 3138-03-3959 putative protease gene, complete cds.

Unnamed grapevine geminivirus () - Unassigned Geminiviridae

  • JQ901105 Grapevine geminivirus isolate JRT[456]17NOV10, complete genome.
  • JX559642 Grapevine geminivirus isolate 3138-03, complete genome.

Unnamed grapevine partitivirus () - Partitivirus

  • JX658566 Grapevine partitivirus isolate 3138-03-531 RNA dependent RNA polymerase (RdRp) gene, complete cds.
  • JX658569 Grapevine partitivirus isolate 3138-03-541 RNA dependent RNA polymerase (RdRp) gene, complete cds.
  • JX658570 Grapevine partitivirus isolate 3138-03-561 RNA dependent RNA polymerase (RdRp) gene, complete cds.
  • JX658571 Grapevine partitivirus isolate 3138-01-3953 RNA dependent RNA polymerase (RdRp) gene, complete cds.

Unnamed hibiscus begomovirus () - Begomovirus

  • DQ022659 Hibiscus rosa-sinensis begomovirus Hainan pre-coat protein (AV2) gene, complete cds; and coat protein (AV1) gene, partial cds.

Unnamed Jiangsu phlebovirus () - Phlebovirus

  • HQ830169 Phlebovirus JS6 segment L, complete sequence.
  • HQ830170 Phlebovirus JS6 segment M, complete sequence.
  • HQ830171 Phlebovirus JS6 segment S, complete sequence.

Unnamed loofah begomovirus () - Begomovirus

  • FJ667943 Begomovirus loofah/Khon Kaen2008/Feb2008 coat protein (CP) gene, complete cds.

Unnamed pumpkin begomovirus () - Begomovirus

  • FJ667944 Begomovirus pumpkin/Suphan Buri/Mar2008 coat protein (CP) gene, complete cds.

Unnamed sugar beet curtovirus () - Curtovirus

  • JN817383 Curtovirus pCO-95-6-31, complete genome.

Unnamed sugar beet mastrevirus () - Mastrevirus

  • EU034169 Sugar beet mastrevirus SK-11 Rep (C1/C2) and replication-associated protein (C1) genes, partial cds; putative movement protein (V1) gene, complete cds; and coat protein (V2) gene, partial cds.

Unnamed sweet potato begomovirus () - Begomovirus

  • GQ268223 Sweet potato begomovirus strain SPBV-D-DNA-[1], complete genome.
  • GQ268224 Sweet potato begomovirus strain SPBV-D-DNA-[2], complete genome.
  • GQ268225 Sweet potato begomovirus strain SPBV-D-DNA-[3], complete genome.
  • GQ268226 Sweet potato begomovirus strain SPBV-D-DNA-[4], complete genome.
  • GQ268227 Sweet potato begomovirus strain SPBV-D-DNA-[5], complete genome.
  • GQ268228 Sweet potato begomovirus strain SPBV-D-DNA-[6], complete genome.
  • GQ268229 Sweet potato begomovirus strain SPBV-D-DNA-[7], complete genome.
  • GQ268230 Sweet potato begomovirus strain SPBV-D-DNA-[8], complete genome.
  • GQ268231 Sweet potato begomovirus strain SPBV-D-DNA-[9], complete genome.

Unnamed Tabernaemontana begomovirus () - Begomovirus

  • DQ339124 Whitefly-transmitted Indian begomovirus from Tabernaemontana divaricata coat protein (AV1) gene, complete cds.

Unnamed TGP carmovirus 1 () - Carmovirus

  • HM640935 TGP Carmovirus 1 isolate 06TGP01091, complete genome.
  • JF437885 TGP Carmovirus 1 isolate 06TGP01062 putative RNA-dependent RNA polymerases, putative movement protein 1, and putative movement protein 2 genes, partial cds; and putative coat protein gene, complete cds.

Unnamed TGP carmovirus 3 () - Carmovirus

  • JF437874 TGP Carmovirus 3 isolate 08TGP00078 putative RNA-dependent RNA polymerase and putative replication associated protein genes, partial cds; and putative movement protein 1, putative movement protein 2, and putative coat protein genes, complete cds.

Unnamed tobacco begomovirus () - Begomovirus

  • EU849092 Tobacco begomovirus - [Cuba:Granma:2007] replication associated protein (AC1) gene, partial cds; nonfunctional transactivator protein (AC2) gene, complete sequence; replication enhancement protein (AC3) gene, complete cds; and coat protein (AV1) gene, partial cds.
  • EU873000 Tomato begomovirus - [Cuba:Granma:2007] nonfunctional transactivator protein (AC2) and nonfunctional replication enhancement protein (AC3) genes, partial sequence; and replication associated protein (AC1) and AC4 protein (AC4) genes, complete cds.

Unnamed tomato begomovirus () - Begomovirus

  • AJ422123 Tomato begomovirus Tulear 1 V2 gene for precoat protein and V1 gene for coat protein (partial), isolate Tulear 1
  • AJ422124 Tomato begomovirus Tulear 1 V2 gene for precoat protein and V1 gene for coat protein (partial), isolate Tulear 2
  • AJ620911 Tomato Mayotte begomovirus V2 gene for precoat protein and partial V1 gene for coat protein, isolate Dembeni
  • AJ620912 Tomato Mayotte begomovirus partial V1 gene for coat protein and V2 gene for precoat protein, isolate Combani
  • AJ620913 Tomato Mayotte begomovirus partial V1 gene for coat protein and V2 gene for precoat protein, isolate Kahani
  • AM048869 Tomato geminivirus geminivirus AV2 gene and AV1 gene (partial), isolate Y207
  • AY738097 Begomovirus sp. CR-2004-2 coat protein (AV1) gene, partial cds; replication associated protein (AC3) and transactivator protein (AC2) genes, complete cds; and replicase (AC1) gene, partial cds.
  • AY738098 Begomovirus sp. CR-2004-3 coat protein (AV1) gene, partial cds; replication associated protein (AC3) and transactivator protein (AC2) genes, complete cds; and replicase (AC1) gene, partial cds.
  • AY738099 Begomovirus sp. CR-2004-4 coat protein (AV1) gene, partial cds; replication associated protein (AC3) and transactivator protein (AC2) genes, complete cds; and replicase (AC1) gene, partial cds.

Unnamed verbena potyvirus () - Potyvirus

  • AY825284 Verbena canadensis potyvirus MA-2005 polyprotein gene, partial cds.

Unnamed wax gourd begomovirus () - Begomovirus

  • FJ667942 Begomovirus wax gourd/Suphan Buri2008/Feb2008 coat protein (CP) gene, complete cds.

Uriurana virus (URIV) - Phlebovirus

  • HM566188 Uriurana virus segment M, complete sequence.
  • HM566189 Uriurana virus segment L, complete sequence.
  • HM566190 Uriurana virus segment S, complete sequence.

Urochloa hoja blanca virus (UHBV) - Tenuivirus

  • U82446 Urochloa hoja blanca virus non-capsid protein (pv4) and unknown (pc4) genes, complete cds.
  • U82447 Urochloa hoja blanca virus cytoplasmic protein (pv3) and nucleoprotein (pc3) genes, complete cds.

Urochloa streak virus (UroSV) - Mastrevirus

  • EU445692 Urochloa streak virus isolate USV-NLag1, complete genome.
  • EU445693 Urochloa streak virus isolate USV-NIwo, complete genome.
  • EU445694 Urochloa streak virus isolate USV-NLag2, complete genome.
  • EU445695 Urochloa streak virus isolate USV-NOdo, complete genome.
  • EU445696 Urochloa streak virus isolate USV-NIle, complete genome.
  • EU445697 Urochloa streak virus isolate USV-NIpe, complete genome.
  • EU445698 Urochloa streak virus isolate USV-NEji, complete genome.
  • EU445699 Urochloa streak virus isolate USV-NEji2, complete genome.

Usutu virus (USUV) - Flavivirus

  • AY453411 Usutu virus strain Vienna 2001 from Austria, complete genome.

Uukuniemi virus (UUKV) - Phlebovirus

  • D10759 Uukuniemi virus L RNA segment for RNA polymerase, complete cds.
  • M17417 Uukuniemi virus segment M membrane glycoproteins G1 and G2 gene, complete cds.
  • M33551 Uukuniemi virus S RNA containing nucleocapsid N protein mRNA, complete cds and non-structural (NS-s) protein mRNA, complete cds.