Sequence of DPV Shallot yellow stripe virus

Onion yellow dwarf virus gene for coat protein, partial cds.

ACC No: AB000473

Dated: 2003-07-07 | Length: 1198 | CRC: 986832451

                !!NA_SEQUENCE 1.0
ID   AB000473   standard; RNA; VRL; 1198 BP.
XX
AC   AB000473;
XX
SV   AB000473.1
XX
DT   13-FEB-1998 (Rel. 54, Created)
DT   07-JUL-2003 (Rel. 76, Last updated, Version 4)
XX
DE   Onion yellow dwarf virus gene for coat protein, partial cds.
XX
KW   .
XX
OS   Onion yellow dwarf virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1198
RA   Sumi S.;
RT   ;
RL   Submitted (13-JAN-1997) to the EMBL/GenBank/DDBJ databases.
RL   Shin-ichiro Sumi, Wakunaga Pharmaceutical Co., Ltd., Institute for
RL   Biotechnology Research; 1624 Shimokotachi, Koda-Cho, Takata-Gun, Hiroshima
RL   739-11, Japan (E-mail:sumi_s@wakunaga.co.jp, Tel:+81-826-45-2331,
RL   Fax:+81-826-45-4351)
XX
RN   [2]
RA   Tsuneyoshi T., Ikeda Y., Sumi S.;
RT   "Nucleotide sequences of the 3' terminal region of onion yellow dwarf virus
RT   isolates from Allium plants in Japan";
RL   Virus Genes 15:73-77(1997).
XX
DR   GOA; O55502.
DR   SPTREMBL; O55502; O55502.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1198
FT                   /db_xref="taxon:43130"
FT                   /mol_type="genomic RNA"
FT                   /organism="Onion yellow dwarf virus"
FT                   /clone="11-28"
FT                   /isolate="shimonitanegi"
FT   CDS             <227. .1003
FT                   /codon_start=1
FT                   /db_xref="GOA:O55502"
FT                   /db_xref="SPTREMBL:O55502"
FT                   /transl_table=1
FT                   /product="coat protein"
FT                   /protein_id="BAA24815.1"
FT                   /translation="ASETEDAANVNTDKQVGKSKDKDKDVDVGTSGEFSVPKVKMLSDK
FT                   MRLPRVGKKVILNGKHLLTYKPDQVDLYNTRATHAQFKTWYDAVKLEYELTDEQMKIVM
FT                   NGLMVWCIENGTSQNLTGVWTMMDGDNQMEYPLSPIIDNAKPTFRQIMAHFSDAAEAYI
FT                   EYRNATEKYMPRYGLQRNLREYSLARYAFDFYEMNSKTPIRAKEAHMQMKAAAVRGVAN
FT                   RMFGLDGNISTDDENTERHTAADVNKDHHTLLGLRM"
XX
SQ   Sequence 1198 BP; 410 A; 212 C; 278 G; 298 T; 0 other;

 AB000473  Length: 1198  July 15, 2003 09:04  Type: N  Check: 2025  ..

       1  atacgatgaa ttgttacacg agatcagatt attttataag tgggtgttag
      51  agcaagcacc atataattta atagcccaaa ctgggaaggc gccgtatatt
     101  gcagaaacag cacttaaaag attgtacatg gatgaacaag caactgagag
     151  tgagttagag aagtatagtc gactttacca aatcttagat gagcacatac
     201  caacaccaag ttatgtgtca tatcaagctt cagaaacaga agacgctgct
     251  aatgtgaaca ctgataagca ggttggaaag agtaaggata aggataaaga
     301  tgttgacgtt ggtacatcgg gcgagttttc agtgccaaaa gtgaaaatgt
     351  tatcggataa gatgcgtttg ccacgagttg ggaagaaggt aatacttaat
     401  ggcaaacacc ttttaactta caagcctgat caggttgact tatacaatac
     451  acgggcaaca cacgcacagt ttaaaacgtg gtatgacgca gtgaaactcg
     501  aatatgaact gacggatgaa cagatgaaaa tagtcatgaa tgggttaatg
     551  gtgtggtgta ttgagaacgg cacatcacaa aacttaacgg gagtttggac
     601  aatgatggat ggcgacaacc aaatggaata tccactcagc cctattattg
     651  acaacgcaaa accaacattc agacaaataa tggcacattt cagtgacgca
     701  gctgaagcgt acattgaata taggaatgcc acagaaaaat acatgccccg
     751  gtatggactt cagcgaaact taagagaata cagcttagca cgttacgcat
     801  tcgactttta tgagatgaat tcaaagacgc cgatccgcgc gaaggaagct
     851  catatgcaga tgaaagcagc agcggttaga ggggtagcta accgcatgtt
     901  tggcttggat ggtaacataa gcaccgatga tgagaacaca gaacgacata
     951  cagcagctga tgtgaataag gatcatcaca cactgctcgg tcttcgtatg
    1001  taataaacat atatatattt aatatatagt gtcgtgcatt atctttcgtt
    1051  atatttgaat atgagcaaac acagtgtggt tacaccaccg tttgtggcat
    1101  agtatatgat ataacttcgc tagcattatt tgcaccatgc gacttagtgt
    1151  ggtcacacca cgagaagagt caagtgttgt acgttttgtt agggagac