Sequence of DPV Shallot yellow stripe virus

Onion yellow dwarf virus gene for coat protein, partial cds.

ACC No: AB000474

Dated: 2003-07-07 | Length: 1199 | CRC: 1137001385

                !!NA_SEQUENCE 1.0
ID   AB000474   standard; RNA; VRL; 1199 BP.
XX
AC   AB000474;
XX
SV   AB000474.1
XX
DT   13-FEB-1998 (Rel. 54, Created)
DT   07-JUL-2003 (Rel. 76, Last updated, Version 4)
XX
DE   Onion yellow dwarf virus gene for coat protein, partial cds.
XX
KW   .
XX
OS   Onion yellow dwarf virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1199
RA   Sumi S.;
RT   ;
RL   Submitted (13-JAN-1997) to the EMBL/GenBank/DDBJ databases.
RL   Shin-ichiro Sumi, Wakunaga Pharmaceutical Co., Ltd., Institute for
RL   Biotechnology Research; 1624 Shimokotachi, Koda-Cho, Takata-Gun, Hiroshima
RL   739-11, Japan (E-mail:sumi_s@wakunaga.co.jp, Tel:+81-826-45-2331,
RL   Fax:+81-826-45-4351)
XX
RN   [2]
RA   Tsuneyoshi T., Ikeda Y., Sumi S.;
RT   "Nucleotide sequences of the 3' terminal region of onion yellow dwarf virus
RT   isolates from Allium plants in Japan";
RL   Virus Genes 15:73-77(1997).
XX
DR   GOA; O55503.
DR   SPTREMBL; O55503; O55503.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1199
FT                   /db_xref="taxon:43130"
FT                   /mol_type="genomic RNA"
FT                   /organism="Onion yellow dwarf virus"
FT                   /clone="R9"
FT                   /isolate="rakkyo"
FT   CDS             <227. .1003
FT                   /codon_start=1
FT                   /db_xref="GOA:O55503"
FT                   /db_xref="SPTREMBL:O55503"
FT                   /transl_table=1
FT                   /product="coat protein"
FT                   /protein_id="BAA24816.1"
FT                   /translation="ASETEDAANVNTDKQVGKNKDKDKDVDVGTSGEFSVPKVKMLSDK
FT                   MRLPRVGKKVILNGKHLLAYKPDQVDLYNTRATHAQFKTWYDAVKLEYELTDEQMKIVM
FT                   NGLMVWCIENGTSQNLTGVWTMMDGDNQMEYPLSPIIDNAKPTFRQIMAHFSDAAEAYI
FT                   EYRNATEKYMPRYGLQRNLREYSLARYAFDFYEMNSKTPIRAKEAHMQMKAAAVRGVVN
FT                   RMFGLDGNISTDDENTERHTAADVNKDHHTLLGLRM"
XX
SQ   Sequence 1199 BP; 403 A; 207 C; 285 G; 304 T; 0 other;

 AB000474  Length: 1199  July 15, 2003 09:04  Type: N  Check: 5686  ..

       1  atatgatgag ctgttgcatg aaattagatt attttacaag tgggtgctgg
      51  agcaagcacc atataatcta atagcccaaa ctggaaaagc gccatatatt
     101  gcggagacag cacttaaaag attgtatatg gatgaacaag cgactgagag
     151  tgagttagag aagtatagtc gactctacca aatcttagat gagcgtatac
     201  caataccgag ttatgtgtca taccaggctt cagaaacaga agatgctgct
     251  aatgtgaaca ctgataagca ggttggaaag aataaggata aggataagga
     301  tgttgacgtt ggtacatcgg gtgagttttc agtaccaaaa gtgaagatgc
     351  tatcggataa aatgcgtttg ccacgagtcg ggaagaaggt aattcttaat
     401  ggcaaacatc tcttagctta caagcctgac caagttgact tatacaacac
     451  acgggcaacg catgcacagt ttaaaacgtg gtacgacgca gtgaaacttg
     501  aatatgaact gacggacgaa cagatgaaaa tagtcatgaa tgggttgatg
     551  gtgtggtgca ttgaaaacgg tacatcacaa aacttaacgg gagtttggac
     601  gatgatggat ggtgataatc aaatggaata tccactcagt ccaatcattg
     651  acaacgcaaa accaacattc agacaaataa tggcacattt cagtgacgca
     701  gctgaagcgt acattgaata caggaatgcc acagaaaaat acatgccccg
     751  gtatggactt cagcgaaact taagagaata cagcttagca cgttacgcgt
     801  tcgactttta tgagatgaat tcaaagacgc cgatccgcgc gaaggaagct
     851  catatgcaga tgaaagcagc agcggttaga ggggtagtta accgtatgtt
     901  tggcttggat ggtaacataa gcactgatga tgagaacaca gaacgacata
     951  cagcagctga tgtgaataag gatcatcaca cactgctcgg tcttcgtatg
    1001  taacaaacat atatatatat taatatatag tgtcgtgcat tatctttcgt
    1051  tatatttgaa tatgagcaaa cacagtgtgg ttataccacc gtttgtggca
    1101  tagtatatga tataacttcg ctagcattat ttgcaccatt tgatttagtg
    1151  tggtcacacc acgagaagag tcaggtgttg tacgttttgt tagggagac