Sequence of DPV Onion yellow dwarf virus
Onion yellow dwarf virus NIb gene for polyprotein (RNA polymerase and coat protein), partial cds.
ACC No: AB000838
Dated: 2009-01-16 | Length: 1215 | CRC: -234434281
ID AB000838; SV 1; linear; genomic RNA; STD; VRL; 1215 BP.
XX
AC AB000838;
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DT 11-FEB-1998 (Rel. 54, Created)
DT 16-JAN-2009 (Rel. 99, Last updated, Version 5)
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DE Onion yellow dwarf virus NIb gene for polyprotein (RNA polymerase and coat
DE protein), partial cds.
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KW .
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OS Onion yellow dwarf virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
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RN [1]
RP 1-1215
RA Sumi S.;
RT ;
RL Submitted (03-FEB-1997) to the EMBL/GenBank/DDBJ databases.
RL Contact:Shin-ichiro Sumi Wakunaga Pharmaceutical Co., Ltd., Institute for
RL Biotechnology Research; 1624 Shimokotachi, Koda-Cho, Takata-Gun, Hiroshima
RL 739-11, Japan
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RN [2]
RA Tsuneyoshi T., Matsumi T., Natsuaki K.T., Sumi S.;
RT "Nucleotide sequence analysis of virus isolates indicates the presence of
RT three potyvirus species in Allium plants";
RL Arch. Virol. 143:97-113(1998).
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FH Key Location/Qualifiers
FH
FT source 1. .1215
FT /organism="Onion yellow dwarf virus"
FT /mol_type="genomic RNA"
FT /isolation_source="garlic"
FT /clone="Gfw"
FT /db_xref="taxon:43130"
FT CDS <1. .1000
FT /codon_start=2
FT /transl_table=1
FT /gene="NIb"
FT /product="polyprotein"
FT /db_xref="GOA:O55506"
FT /db_xref="InterPro:IPR001205"
FT /db_xref="InterPro:IPR001592"
FT /db_xref="UniProtKB/TrEMBL:O55506"
FT /protein_id="BAA24786.1"
FT /translation="YPDLLHEIRKFYQWLLEQAPYNVIAQSGKAPYIAETALKKLFTNI
FT DASEAELEKYYEVYMDLENEEAIPKKVRYQAGEGEDAAAQSSTSQQVAKQKDKDVDTGT
FT TGKFAIPRIKALSDKMRFPKVGKTVVLNAEHLLAYKPEQIELYNTRSTKQQFENWYNAI
FT KKEYDVNDEQMKILLNGLMVWCIENGTSPNLSGNWTMMDGDDQIEYPLAPIVDNAKPTF
FT RQIMAHFSDAAEAYIEYRNATEKYMPRYGLQRNLTELSLARYAFDFYEMTSKTPKRAKE
FT AHMQMKAAAIRGVTNRMFGLDGNVNTTEEDTERHTAADVNKNQHTLLGIKM"
FT mat_peptide <1. .226
FT /product="RNA-dependent RNA polymerase"
FT /note="C-terminal portion"
FT mat_peptide <227. .997
FT /product="coat protein"
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SQ Sequence 1215 BP; 429 A; 210 C; 273 G; 303 T; 0 other;
ab000838 Length: 1215 16-JAN-2009 Type: N Check: 1093 ..
1 ttacccagat cttttgcacg aaattcggaa attttatcaa tggctcttag
51 aacaagctcc atataacgta atagctcaga gcggaaaagc accttacata
101 gcagaaacag ctctcaaaaa gttgtttact aacattgatg caagtgaggc
151 agaattggag aaatattatg aagtatatat ggaccttgaa aatgaagagg
201 caattccgaa gaaggtccgc taccaggcag gagaagggga agatgcagca
251 gcacaatcaa gcacgtcaca acaagtcgca aagcagaagg acaaggatgt
301 tgatactggc actactggta aatttgcaat cccgagaatt aaagcgctgt
351 ctgataaaat gagatttcca aaagttggta agaccgttgt actcaacgca
401 gaacacttgt tggcatacaa gccagaacag attgaattgt acaataccag
451 atcaacaaag cagcaatttg agaactggta taatgcaata aagaaagaat
501 atgatgtcaa cgatgagcaa atgaaaattt tactaaatgg attaatggtt
551 tggtgcattg agaacggaac atctccaaat ttatcaggaa attggactat
601 gatggatggt gatgaccaaa ttgaatatcc gttggcgcct attgtggata
651 acgcgaaacc aacatttagg caaataatgg cgcatttcag tgatgcggct
701 gaagcataca ttgaatatag gaacgccaca gaaaaatata tgccccgata
751 tggacttcag cgaaatttaa cagaacttag tttggcacgt tacgcattcg
801 atttttacga gatgacttca aaaactccta aacgagcaaa agaagcgcac
851 atgcaaatga aggcggctgc gattagaggg gtaactaacc gcatgtttgg
901 cctggatggt aacgtaaaca ctacagaaga ggacacggaa agacacacag
951 cagcggatgt caataagaac cagcacacgt tgcttgggat aaaaatgtga
1001 aaccatgttg ttgtctttag ttttatatat atatatagtt atataaaaac
1051 gtatgtaata tgtaatcctc ttcatttcgt ttaatctgcc ttcgagcaac
1101 gaaatgtggt gtaccactag ttgtggcgaa cgatacggtt aaacatctgt
1151 gattaatgtt gaacttcatg agagtgatgt atcacgaggt gaattttggc
1201 gtgaattacg gagac