Sequence of DPV Shallot yellow stripe virus
Welsh onion yellow stripe virus NIb gene for polyprotein (RNA polymerasse and coat protein), partial cds.
ACC No: AB000842
Dated: 2009-01-16 | Length: 1200 | CRC: -1561553227
ID AB000842; SV 1; linear; genomic RNA; STD; VRL; 1200 BP.
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AC AB000842;
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DT 11-FEB-1998 (Rel. 54, Created)
DT 16-JAN-2009 (Rel. 99, Last updated, Version 5)
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DE Welsh onion yellow stripe virus NIb gene for polyprotein (RNA polymerasse
DE and coat protein), partial cds.
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KW .
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OS Welsh onion yellow stripe virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
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RN [1]
RP 1-1200
RA Sumi S.;
RT ;
RL Submitted (03-FEB-1997) to the EMBL/GenBank/DDBJ databases.
RL Contact:Shin-ichiro Sumi Wakunaga Pharmaceutical Co., Ltd., Institute for
RL Biotechnology Research; 1624 Shimokotachi, Koda-Cho, Takata-Gun, Hiroshima
RL 739-11, Japan
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RN [2]
RA Tsuneyoshi T., Matsumi T., Natsuaki K.T., Sumi S.;
RT "Nucleotide sequence analysis of virus isolates indicates the presence of
RT three potyvirus species in Allium plants";
RL Arch. Virol. 143:97-113(1998).
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FH Key Location/Qualifiers
FH
FT source 1. .1200
FT /organism="Welsh onion yellow stripe virus"
FT /mol_type="genomic RNA"
FT /isolation_source="shallot"
FT /clone="Si-1"
FT /db_xref="taxon:62060"
FT CDS <1. .1003
FT /codon_start=2
FT /transl_table=1
FT /gene="NIb"
FT /product="polyprotein"
FT /db_xref="GOA:O55510"
FT /db_xref="InterPro:IPR001205"
FT /db_xref="InterPro:IPR001592"
FT /db_xref="UniProtKB/TrEMBL:O55510"
FT /protein_id="BAA24790.1"
FT /translation="YDELLHEIRLFYKWVLEQAPYNLIAQTGKAPYIAETALKRLYMDE
FT QVTESELEKYSRLYQILDERIPTPSYVSYQAIETEDAANVNTDKQVGKNKDKDKDVDVG
FT TSGEFSVPKVKMLSDKMRLPRIGKKVILNGKHLLSYKPDQIDLYNTRATHAQFKTWYEA
FT VKLEYELTDEQMRIVMNGLMVWCIENGTSQNLTGVWTMMDGDNQMEYPLSPIVDNAKPT
FT FRQIMAHFSDAAEAYIEYRNATEKYMPRYGLQRNLREYSLARYAFDFYEMNSKTPIRAK
FT EAHMQMKAAAVRGAANRMFGLDGNIGTDDENTERHTAADVNKDHHTLLGLRM"
FT mat_peptide <1. .226
FT /product="RNA-dependent RNA polymerase"
FT /note="C-terminal portion"
FT mat_peptide 227. .1000
FT /product="coat protein"
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SQ Sequence 1200 BP; 410 A; 208 C; 284 G; 298 T; 0 other;
ab000842 Length: 1200 16-JAN-2009 Type: N Check: 2562 ..
1 ttacgatgaa ttgctacacg aaatcagatt attttataag tgggtgttag
51 agcaagcacc gtacaatcta atagcgcaaa caggaaaagc tccgtatata
101 gcagagacgg cattgaagag attatatatg gatgagcaag taacagagag
151 tgaacttgag aagtatagcc gactatacca gattttggat gagcgcatac
201 caacaccaag ttatgtttcg tatcaagcaa tagaaacaga agacgctgcg
251 aatgtaaaca ccgacaagca agtcggaaag aacaaggata aggataaaga
301 tgttgatgtc ggcacgtcag gtgagttttc agtgccaaag gtgaaaatgt
351 tatcagataa aatgcgtttg ccacgaattg gaaagaaggt gatactcaac
401 ggcaaacatc ttttatctta taaacctgat caaattgatt tgtataacac
451 acgagccaca cacgcacagt tcaaaacgtg gtacgaggcg gtgaaactag
501 aatatgaatt gacggatgaa caaatgagaa tagtcatgaa tggtctgatg
551 gtgtggtgca ttgagaatgg cacatcacaa aatttgacgg gggtttggac
601 gatgatggat ggcgacaacc aaatggagta cccactcagt cctattgttg
651 ataatgcaaa acccacattt agacaaataa tggcacattt cagtgacgca
701 gctgaagcgt acattgaata taggaatgcc acagaaaaat acatgcctcg
751 gtatggactt cagcgaaatt taagagaata cagcctagca cgttacgcat
801 tcgactttta tgagatgaat tcaaagacgc cgatccgcgc gaaggaagct
851 catatgcaga tgaaagcggc agcggttaga ggggcagcta accgtatgtt
901 tggcttggat ggtaacatag gcaccgatga tgagaacaca gaacgacata
951 cagcagctga tgtgaataag gatcatcaca cgctgctcgg tcttcgtatg
1001 taataaacat atatatattt aatatatagt gtcgtgcatt atctttcgtt
1051 atatttgaat atgagcaaac atagtgtggt taaaccaccg tttgtggcat
1101 agtatatgat ataacttcgc tagcattatt tgcaccataa gactcagtgt
1151 ggtggtacca cgataaaata gtcgagtgtt gtacgttttg ctagagagac