Sequence of DPV Onion yellow dwarf virus
Onion yellow dwarf virus NIb gene for polyprotein (RNA polymerase and coat protein), partial cds.
ACC No: AB000843
Dated: 2009-01-16 | Length: 1210 | CRC: 361978459
ID AB000843; SV 1; linear; genomic RNA; STD; VRL; 1210 BP.
XX
AC AB000843;
XX
DT 11-FEB-1998 (Rel. 54, Created)
DT 16-JAN-2009 (Rel. 99, Last updated, Version 5)
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DE Onion yellow dwarf virus NIb gene for polyprotein (RNA polymerase and coat
DE protein), partial cds.
XX
KW .
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OS Onion yellow dwarf virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
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RN [1]
RP 1-1210
RA Sumi S.;
RT ;
RL Submitted (03-FEB-1997) to the EMBL/GenBank/DDBJ databases.
RL Contact:Shin-ichiro Sumi Wakunaga Pharmaceutical Co., Ltd., Institute for
RL Biotechnology Research; 1624 Shimokotachi, Koda-Cho, Takata-Gun, Hiroshima
RL 739-11, Japan
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RN [2]
RA Tsuneyoshi T., Matsumi T., Natsuaki K.T., Sumi S.;
RT "Nucleotide sequence analysis of virus isolates indicates the presence of
RT three potyvirus species in Allium plants";
RL Arch. Virol. 143:97-113(1998).
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FH Key Location/Qualifiers
FH
FT source 1. .1210
FT /organism="Onion yellow dwarf virus"
FT /mol_type="genomic RNA"
FT /isolation_source="shallot"
FT /clone="Si-2G"
FT /db_xref="taxon:43130"
FT CDS <1. .1000
FT /codon_start=2
FT /transl_table=1
FT /gene="NIb"
FT /product="polyprotein"
FT /db_xref="GOA:O55511"
FT /db_xref="InterPro:IPR001205"
FT /db_xref="InterPro:IPR001592"
FT /db_xref="UniProtKB/TrEMBL:O55511"
FT /protein_id="BAA24791.1"
FT /translation="YPDLVHEIRKFYQWLLEQAPYSMIAQSGQAPYIAETALRKLYTNV
FT DASERELEKYYEVYLNLENEETVSKEVRYQAGGSEDAAAQPSTSKQISKQKDRDVDAGT
FT TGKFSVPKIKALSDKMRFPKVGQLVVLNAEHLLTYKPEQIELYNTRATQRQFESWYTAI
FT KTEYDVNDEQMKIILNGLMVWCIENGTSPNLSGTWTMMDGDEQVEYPLAPILDNAKPTF
FT RQIMAHFSDAAEAYIEYRNATEKYMPRYGLQRNLTELSLARYAFDFYEMTSKTPKRAKE
FT AHMQMKAAAVRGATNRLFGLDGNVNTTEEDTERHTAADINKNQHTLLGIRM"
FT mat_peptide <1. .226
FT /product="RNA-dependent RNA polymerase"
FT /note="C-terminal portion"
FT mat_peptide 227. .997
FT /product="coat protein"
XX
SQ Sequence 1210 BP; 399 A; 230 C; 284 G; 297 T; 0 other;
ab000843 Length: 1210 16-JAN-2009 Type: N Check: 4961 ..
1 ctatcctgat cttgtgcatg aaatacgaaa attctaccaa tggttactgg
51 agcaggctcc ttacagtatg atagcacaaa gtgggcaagc gccatacata
101 gcggaaacag ctcttagaaa gctatacact aatgttgacg cgagcgaacg
151 tgaattggaa aaatactatg aagtctactt aaaccttgag aatgaagaaa
201 cagtctctaa agaggtgcga tatcaagcag ggggtagtga agatgcagca
251 gctcaaccaa gtacgtcaaa gcagatatca aaacagaagg atagggatgt
301 cgacgcaggc actacaggta agttttcggt gcccaagata aaagcgctat
351 ctgataaaat gcgatttccg aaagtcgggc aacttgttgt gctcaatgcc
401 gaacatttgt taacatataa gcccgaacaa atcgaattgt acaacacaag
451 ggcaacacaa cgccaatttg agagttggta cacggccatt aagacagaat
501 acgatgtcaa tgatgagcag atgaaaatta tattaaatgg tttaatggtc
551 tggtgtattg aaaatggcac ttctccaaac ctgtcaggaa cctggactat
601 gatggatgga gatgagcaag ttgaataccc actagcaccg attttagaca
651 atgcaaaacc tacgtttagg cagattatgg cgcatttcag tgatgcagct
701 gaagcataca ttgaatatag gaacgccacg gaaaaataca tgccccggta
751 tggtcttcag cgaaatttaa cagaacttag tttggcgcgt tacgcattcg
801 atttttatga aatgacttca aagactccaa aacgggctaa agaggcacat
851 atgcaaatga aggcggctgc ggttagaggg gcaactaacc gcttgtttgg
901 cctggatggt aacgtcaaca cgacagaaga ggacacggaa agacacacag
951 ctgcggacat aaataagaac cagcacacgc tgcttggcat taggatgtga
1001 aaccgcacgt ttgtctttag ttttatatat ttacttatat aaaaacgtat
1051 gtaatatgta ttccttttcc ttcgtttaac ctgacttcga gcaacgaaat
1101 gtggtgtacc actagttgtg gcgaacgata cggttaaaca tctgtgatta
1151 atgtcgagct ttatgagtgt gaagtatccc gaggtgaatc ttggcgtgaa
1201 ttacagagac