Sequence of DPV Shallot latent virus
Garlic latent virus CP, NABP genes for coat protein, nucleic acid binding protein, complete cds, clone: CLC-1.
ACC No: AB004458
Dated: 2009-01-30 | Length: 1300 | CRC: 1846516000
ID AB004458; SV 1; linear; genomic RNA; STD; VRL; 1300 BP.
XX
AC AB004458;
XX
DT 23-APR-1998 (Rel. 55, Created)
DT 30-JAN-2009 (Rel. 99, Last updated, Version 5)
XX
DE Garlic latent virus CP, NABP genes for coat protein, nucleic acid binding
DE protein, complete cds, clone: CLC-1.
XX
KW .
XX
OS Garlic latent virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Flexiviridae;
OC Carlavirus.
XX
RN [1]
RP 1-1300
RA Sumi S.;
RT ;
RL Submitted (30-MAY-1997) to the EMBL/GenBank/DDBJ databases.
RL Contact:Shin-ichiro Sumi Wakunaga Pharmaceutical Co., Ltd, Institute for
RL Biotechnology Research; 1624 Shimokotachi, Koda-Cho, Takata-Gun, Hiroshima
RL 739-11, Japan
XX
RN [2]
RA Tsuneyoshi T., Matsumi T., Deng T., Sako I., Sumi S.;
RT "Differentiation of Allium carlaviruses isolated from different parts of
RT the world based on the viral coat protein sequence";
RL Arch. Virol. 143:1093-1107(1998).
XX
FH Key Location/Qualifiers
FH
FT source 1. .1300
FT /organism="Garlic latent virus"
FT /mol_type="genomic RNA"
FT /isolation_source="Chinese leek"
FT /clone="CLC-1"
FT /db_xref="taxon:12458"
FT CDS 24. .917
FT /codon_start=1
FT /transl_table=1
FT /gene="CP"
FT /product="coat protein"
FT /db_xref="GOA:O70715"
FT /db_xref="InterPro:IPR000052"
FT /db_xref="InterPro:IPR013569"
FT /db_xref="UniProtKB/TrEMBL:O70715"
FT /protein_id="BAA25768.1"
FT /translation="MANEEEEISRMQNLPARDPSTIPEQERSKAVNDVGVMDRENFDAV
FT LRRSEDRFNKLKEKCLSELSSVRVTNCGWESGRPKAQLADSLKGDASNIFTRPSMDALL
FT VRNYAPESNNMATAEELAKISAKIQALGAPEECLAEVFWDICMYCTTAGSSPNVNPKGT
FT ISVGGKVVTRDMVVAVIKEYSTLRQVCRCYAPVVWNYMLLNEQPPANWDAKGFTENTKY
FT AAFDTFDAVTNKAAIQPLEGLIRAPTDEERIAFATHKKLALAKNAQNSRYSNTSAEVTG
FT GFFGCFPKHNFRENRC"
FT CDS 911. .1207
FT /codon_start=1
FT /transl_table=1
FT /gene="NABP"
FT /product="nucleic acid binding protein"
FT /db_xref="GOA:O70716"
FT /db_xref="InterPro:IPR002568"
FT /db_xref="UniProtKB/TrEMBL:O70716"
FT /protein_id="BAA25769.1"
FT /translation="MLIKQRTYRRLLRAIFKLHTNKNCVDIIDIIVNKIVCGSAGASKY
FT ARARRAKSIGRCPRCFRCAPGFYFTKNCDTKTCFPGISYNEKVKNFIVDGVTM"
XX
SQ Sequence 1300 BP; 383 A; 265 C; 295 G; 357 T; 0 other;
ab004458 Length: 1300 30-JAN-2009 Type: N Check: 9403 ..
1 ttaacggcgc tctaattgat attatggcta acgaagaaga agaaatcagc
51 agaatgcaga accttcccgc tcgtgatcct agcactatcc ctgaacagga
101 acgcagcaag gccgtcaacg atgttggagt gatggatcgt gagaatttcg
151 acgctgtgct gcgtaggagt gaagacaggt tcaacaagct taaagaaaaa
201 tgcctatcag aattatctag cgtgagagtt actaattgtg gctgggaatc
251 cggtagaccc aaagctcaac ttgccgatag tctcaagggg gacgcttcca
301 atatcttcac tcgtccctca atggatgctc tacttgttag aaattacgcg
351 cctgaaagca ataacatggc tacagctgaa gagttggcta aaatctctgc
401 taagattcag gctcttgggg ctcctgaaga gtgtttggct gaggtcttct
451 gggacatttg catgtattgt acaacggccg gcagctcccc gaacgtgaac
501 ccaaaaggga ccatctccgt tggaggcaaa gtcgtgacta gagacatggt
551 tgtcgctgtt atcaaagagt actctacatt gcgtcaagtt tgtcgctgtt
601 acgcacctgt ggtctggaat tacatgctgt taaacgagca accacctgct
651 aattgggacg ctaaaggatt taccgaaaat actaaatatg ctgctttcga
701 cacttttgat gctgtcacca ataaggctgc cattcaacca cttgaaggac
751 taattagagc cccaactgat gaggaacgca ttgcctttgc tacgcacaag
801 aagttggccc tagccaaaaa tgcccagaac tcacgttatt ccaatacttc
851 tgccgaggtc actggtggct tcttcggatg ttttccaaaa cataatttca
901 gagaaaatcg atgttgatca agcaaagaac ttaccgtaga ttattgcgtg
951 ctatatttaa gttgcatacc aataaaaatt gtgtggatat tatcgatatt
1001 attgttaata aaatagtgtg tggaagtgct ggggcttcaa agtatgctcg
1051 agctcgtaga gctaagagca taggcagatg ccctagatgt ttccggtgtg
1101 ctcccggttt ttatttcact aaaaattgtg atactaaaac ttgtttccca
1151 ggcattagct ataatgaaaa agtcaagaac tttatagttg atggtgtaac
1201 aatgtgaaac ccgactatag ttcttggcaa gttgcccata aaacctaagt
1251 aatgcataag tgggaacgta taaaataatt tgtttttaaa atattttcgc