Sequence of DPV Shallot latent virus

Garlic latent virus gene for coat protein, complete cds, clone: GCHI-3C1.

ACC No: AB004684

Dated: 2009-01-16 | Length: 946 | CRC: -1123756247

                
ID   AB004684; SV 1; linear; genomic RNA; STD; VRL; 946 BP.
XX
AC   AB004684;
XX
DT   23-APR-1998 (Rel. 55, Created)
DT   16-JAN-2009 (Rel. 99, Last updated, Version 5)
XX
DE   Garlic latent virus gene for coat protein, complete cds, clone: GCHI-3C1.
XX
KW   .
XX
OS   Garlic latent virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Flexiviridae;
OC   Carlavirus.
XX
RN   [1]
RP   1-946
RA   Sumi S.;
RT   ;
RL   Submitted (08-JUN-1997) to the EMBL/GenBank/DDBJ databases.
RL   Contact:Shin-ichiro Sumi Wakunaga Pharmaceutical Co., Ltd., Institute for
RL   Biotechnology Research; 1624 Shimokotachi, Koda-Cho, Takata-Gun, Hiroshima
RL   739-11, Japan
XX
RN   [2]
RA   Tsuneyoshi T., Matsumi T., Deng T., Sako I., Sumi S.;
RT   "Differentiation of Allium carlaviruses isolated from different parts of
RT   the world based on the viral coat protein sequence";
RL   Arch. Virol. 143:1093-1107(1998).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .946
FT                   /organism="Garlic latent virus"
FT                   /mol_type="genomic RNA"
FT                   /isolation_source="garlic"
FT                   /clone="GCHI-3C1"
FT                   /db_xref="taxon:12458"
FT   CDS             25. .918
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:O70726"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="InterPro:IPR013569"
FT                   /db_xref="UniProtKB/TrEMBL:O70726"
FT                   /protein_id="BAA25775.1"
FT                   /translation="MTNEEEELSNVQNLPTRDPGTISERERNKAVNDVGVMEREGFEAV
FT                   LRRSESRFNKLKEKCMSELSSVNVTNCGWESGRPKAQLADSLKGDASNIFTRPSMDALL
FT                   VRNYAPESNNMATAEDLAKISAKVQALGAPEECLAEVFWDICMYCTTAGSSPNVNPKGT
FT                   ISVGGKVVTRDMVVAVIKEYSTLRQVCRCYAPVVWNYMLLNEQPPANWDAKGFTENTKY
FT                   AAFDTFDAVTNKAAIQPLEGLIRAPTDAERIAFATHKKLALAKNAQNSRYANTSAEVTG
FT                   GFFGCFPKNNFRENRC"
XX
SQ   Sequence 946 BP; 281 A; 213 C; 227 G; 225 T; 0 other;

ab004684 Length: 946  16-JAN-2009  Type: N  Check: 7481  ..

       1  tacacagcgc tctaaattga tattatgact aacgaagaag aagaactcag
      51  taacgtgcag aacttgccga ctcgcgatcc agggactata tccgagcgtg
     101  aacgaaacaa agcagtaaac gatgttggtg tcatggaacg tgaaggtttt
     151  gaagccgtcc ttcgaaggag cgaaagcagg ttcaacaaac ttaaggagaa
     201  gtgcatgtct gaattgtcta gcgtgaacgt cacgaactgc gggtgggagt
     251  ctggaagacc caaagctcag cttgctgaca gtctcaaagg ggacgcatcg
     301  aatattttca ctaggccctc catggatgcc ctccttgttc gaaattacgc
     351  acctgaaagt aacaacatgg cgactgctga ggatttggcg aaaatctccg
     401  ccaaagtaca agcccttggc gctccagaag aatgtttagc tgaagtcttc
     451  tgggacatct gcatgtactg caccactgca ggaagttctc caaatgtcaa
     501  tcccaaagga actatatctg tcgggggtaa agtcgtaact agggacatgg
     551  tagtagcagt aatcaaagaa tactctacat tgcggcaagt ctgccgctgc
     601  tacgcgcctg tcgtttggaa ttacatgttg ttgaatgaac aaccacccgc
     651  aaattgggat gcaaaagggt tcaccgagaa caccaaatat gctgccttcg
     701  atactttcga tgcggtgaca aataaagctg caatccaacc acttgagggt
     751  ctgattcggg cccccactga cgctgaaaga atcgcatttg caacgcacaa
     801  aaagttggcc ctggctaaga atgctcaaaa ctctcgttat gccaatactt
     851  ctgctgaggt tactggaggt ttcttcggat gttttccaaa aaataacttt
     901  agagagaatc gatgttgatc aaacagagaa cttaccgtcg tttatt