Sequence of DPV Shallot latent virus

Garlic latent virus gene for coat protein, complete cds, clone: GUAE-13C1.

ACC No: AB004685

Dated: 2009-01-16 | Length: 946 | CRC: -924503517

                
ID   AB004685; SV 1; linear; genomic RNA; STD; VRL; 946 BP.
XX
AC   AB004685;
XX
DT   23-APR-1998 (Rel. 55, Created)
DT   16-JAN-2009 (Rel. 99, Last updated, Version 5)
XX
DE   Garlic latent virus gene for coat protein, complete cds, clone: GUAE-13C1.
XX
KW   .
XX
OS   Garlic latent virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Flexiviridae;
OC   Carlavirus.
XX
RN   [1]
RP   1-946
RA   Sumi S.;
RT   ;
RL   Submitted (08-JUN-1997) to the EMBL/GenBank/DDBJ databases.
RL   Contact:Shin-ichiro Sumi Wakunaga Pharmaceutical Co., Ltd., Institute for
RL   Biotechnology Research; 1624 Shimokotachi, Koda-Cho, Takata-Gun, Hiroshima
RL   739-11, Japan
XX
RN   [2]
RA   Tsuneyoshi T., Matsumi T., Deng T., Sako I., Sumi S.;
RT   "Differentiation of Allium carlaviruses isolated from different parts of
RT   the world based on the viral coat protein sequence";
RL   Arch. Virol. 143:1093-1107(1998).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .946
FT                   /organism="Garlic latent virus"
FT                   /mol_type="genomic RNA"
FT                   /isolation_source="garlic"
FT                   /clone="GUAE-13C1"
FT                   /db_xref="taxon:12458"
FT   CDS             25. .918
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:O70727"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="InterPro:IPR013569"
FT                   /db_xref="UniProtKB/TrEMBL:O70727"
FT                   /protein_id="BAA25776.1"
FT                   /translation="MTNEEEELNRLKNLPTRDPGTGPDGERSKAVNDVGVMEREGFEAV
FT                   LRRSESRFNKLKEKCLAELSSINVTNCGWESGRPKAQLADSLKGDASNIFTRPSMDALL
FT                   VRNYAPESNNLATAEELAKISAKVQALGAPEECLAEVFWDICMYCTTAGSSPNVNPKGT
FT                   ISVGGKVVTRDMVVAVIKEYSTLRQVCRCYAPVVWNYMLLNEQPPANWDAKGFTENTKY
FT                   AAFDTFDAVTNKAAIQPLEGLIRAPTDAERIAFATHKKLALAKNSQNSRYANTSAEVTG
FT                   GFFGCFPKNNFREDRC"
XX
SQ   Sequence 946 BP; 275 A; 209 C; 230 G; 232 T; 0 other;

ab004685 Length: 946  16-JAN-2009  Type: N  Check: 2478  ..

       1  tttacagcgc tctaaattga tattatgaca aacgaagaag aagaactcaa
      51  cagattgaag aacttgccta cacgcgaccc ggggacgggg cccgatgggg
     101  aacgcagtaa ggccgttaat gacgttggtg tcatggaacg tgaaggcttt
     151  gaagccgttc ttcgtaggag cgaaagtaga ttcaacaaac tcaaagagaa
     201  gtgcttagct gaattatcta gcataaatgt tacaaattgt ggatgggaat
     251  ccggacgtcc caaagctcag cttgccgata gtcttaaagg agatgcctca
     301  aatattttca cccgtccttc catggatgca cttttggtac ggaactacgc
     351  acctgaaagt aataatctgg ctactgccga ggaattggca aaaatttccg
     401  ccaaagtgca ggctctaggt gcaccagaag aatgtctagc agaagtgttc
     451  tgggatattt gcatgtattg cactaccgcc gggagctcac caaatgtgaa
     501  ccctaagggg accatctctg tcggtggcaa agttgtgact agggacatgg
     551  tggtcgccgt cattaaggag tactcaacgc tacgacaggt ttgccgttgc
     601  tatgcacccg ttgtttggaa ttacatgtta ttgaatgagc aacctcctgc
     651  taattgggat gcgaagggtt tcactgaaaa tactaaatat gctgcctttg
     701  atacctttga tgctgtgact aacaaagccg caatccaacc acttgaaggt
     751  ctgataaggg ccccgactga cgctgaaaga atcgcttttg caacgcacaa
     801  gaagttagcc ctcgccaaga attcacagaa ttcccgatac gccaacacct
     851  ctgctgaggt cactggaggg ttcttcggat gtttccctaa aaacaatttc
     901  agagaggatc gatgttgatc aaacaaagaa cttaccgtag attact