Sequence of DPV Shallot latent virus

Shallot latent virus CP gene for coat protein, complete cds, clone: SI-4C2.

ACC No: AB004802

Dated: 2009-01-16 | Length: 1032 | CRC: -303756861

                
ID   AB004802; SV 1; linear; genomic RNA; STD; VRL; 1032 BP.
XX
AC   AB004802;
XX
DT   23-APR-1998 (Rel. 55, Created)
DT   16-JAN-2009 (Rel. 99, Last updated, Version 5)
XX
DE   Shallot latent virus CP gene for coat protein, complete cds, clone: SI-4C2.
XX
KW   .
XX
OS   Shallot latent virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Flexiviridae;
OC   Carlavirus.
XX
RN   [1]
RP   1-1032
RA   Sumi S.;
RT   ;
RL   Submitted (12-JUN-1997) to the EMBL/GenBank/DDBJ databases.
RL   Contact:Shin-ichiro Sumi Wakunaga Pharmaceutical Co., Ltd., Institute for
RL   Biotechnology Research; 1624 Shimokotachi, Koda-Cho, Takata-Gun, Hiroshima
RL   739-11, Japan
XX
RN   [2]
RA   Tsuneyoshi T., Matsumi T., Deng T., Sako I., Sumi S.;
RT   "Differentiation of Allium carlaviruses isolated from different parts of
RT   the world based on the viral coat protein sequence";
RL   Arch. Virol. 143:1093-1107(1998).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1032
FT                   /organism="Shallot latent virus"
FT                   /mol_type="genomic RNA"
FT                   /isolation_source="shallot"
FT                   /clone="SI-4C2"
FT                   /db_xref="taxon:12172"
FT   CDS             111. .1004
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:O70729"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="InterPro:IPR013569"
FT                   /db_xref="UniProtKB/TrEMBL:O70729"
FT                   /protein_id="BAA25778.1"
FT                   /translation="MANEEEELSRLNNLPTRDPETVPEGERSKAVNDVGVMDREGFEAV
FT                   LRRSESRFNKLKEKCLAELSSINVTNCGWESGRPKAQLADSLKGDASNIFTRPSMDALL
FT                   VRNYAPESNNLATAEELAKISAKVQALGAPEECLAEVFWDICMYCTTAGSSPNVNPKGT
FT                   ISVGGKVVTRDMVVAVIKEYSTLRQVCRCYAPVVWNYMLLNEQPPANWDAKGFTENTKY
FT                   AAFDTFDAVTNKAAIQPLEGLIRAPTDAERIAFATHKKLALAKNSQNSRYANTSAEVTG
FT                   GFFGCFPKNNFRENRC"
XX
SQ   Sequence 1032 BP; 297 A; 218 C; 252 G; 265 T; 0 other;

ab004802 Length: 1032  16-JAN-2009  Type: N  Check: 4633  ..

       1  agaatcggtc aaatttcttg ggtgtgaatt cactagggat ttcatagatt
      51  ttgctataca agctaaacct tttggttcac tttaggttta cagcgctcta
     101  aattgatatt atggcaaacg aagaagaaga actcagcaga ttgaataatt
     151  tgcccactcg cgatccggag actgtacccg aaggggagcg cagtaaggct
     201  gttaatgatg ttggcgttat ggatcgtgaa ggcttcgagg ccgttcttcg
     251  taggagtgaa agtagattca acaaacttaa ggagaagtgc ttagcagaat
     301  tatctagcat aaatgtgacg aattgcggat gggaatctgg acgccccaaa
     351  gctcagctcg ccgatagtct taaaggggat gcttcgaata ttttcacccg
     401  tccctccatg gacgcacttt tggtacggaa ctacgcacct gaaagtaata
     451  atctggcgac cgctgaagaa ttagcaaaaa tttctgccaa agtgcaggct
     501  ctaggtgcgc cagaagagtg tcttgctgaa gtgttctggg acatttgcat
     551  gtattgcact acagccggga gttcgccaaa tgtgaaccct aaagggacca
     601  tctctgtcgg tggtaaggtg gtaactaggg acatggtggt agccgttatc
     651  aaggaatact caacactacg acaggtttgc cgctgttacg cgcccgtcgt
     701  ttggaattac atgttattga atgaacaacc gcctgctaat tgggacgcaa
     751  aggggttcac cgaaaacact aaatatgctg cttttgatac cttcgatgcg
     801  gtaactaaca aggctgcaat ccaaccgcta gaaggcctca taagggcccc
     851  gactgacgct gaacgcattg ctttcgcaac acacaagaag ctagctcttg
     901  cgaagaattc acaaaattct cgatacgcaa atacttctgc tgaggtcact
     951  ggaggattct ttggatgctt tcctaaaaac aactttagag agaatcgatg
    1001  ttgatcaagc aaagaactta ccgtagatta ct