Sequence of DPV Shallot latent virus

Shallot latent virus CP gene for coat protein, complete cds, clone: LI-3C1.

ACC No: AB004803

Dated: 2009-01-16 | Length: 946 | CRC: 1217385617

                
ID   AB004803; SV 1; linear; genomic RNA; STD; VRL; 946 BP.
XX
AC   AB004803;
XX
DT   23-APR-1998 (Rel. 55, Created)
DT   16-JAN-2009 (Rel. 99, Last updated, Version 5)
XX
DE   Shallot latent virus CP gene for coat protein, complete cds, clone: LI-3C1.
XX
KW   .
XX
OS   Shallot latent virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Flexiviridae;
OC   Carlavirus.
XX
RN   [1]
RP   1-946
RA   Sumi S.;
RT   ;
RL   Submitted (12-JUN-1997) to the EMBL/GenBank/DDBJ databases.
RL   Contact:Shin-ichiro Sumi Wakunaga Pharmaceutical Co., Ltd., Institute for
RL   Biotechnology Research; 1624 Shimokotachi, Koda-Cho, Takata-Gun, Hiroshima
RL   739-11, Japan
XX
RN   [2]
RA   Tsuneyoshi T., Matsumi T., Deng T., Sako I., Sumi S.;
RT   "Differentiation of Allium carlaviruses isolated from different parts of
RT   the world based on the viral coat protein sequence";
RL   Arch. Virol. 143:1093-1107(1998).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .946
FT                   /organism="Shallot latent virus"
FT                   /mol_type="genomic RNA"
FT                   /isolation_source="leek"
FT                   /clone="LI-3C1"
FT                   /db_xref="taxon:12172"
FT   CDS             25. .918
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:O70730"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="InterPro:IPR013569"
FT                   /db_xref="UniProtKB/TrEMBL:O70730"
FT                   /protein_id="BAA25779.1"
FT                   /translation="MAGDEETLSEIRKLPTRDPAKNPESERSKAVNDVDIMEREGFEAV
FT                   LRRSESRFNRLKEKWLAELSSVNVTNCGWESGRPKAQIADNLKGDASNIFTRPSMDALL
FT                   VRNYAPESNNLATAEELAKISAKVQALGAPEECLAEVFWDICMYCTTAGSSPNVNPKGT
FT                   ISVGGKVVTRDMVVAVIKEYSTLRQVCRCYAPVVWNYMLLNEQPPANWDAKGFTENTKY
FT                   AAFDTFDAVTNQAAIQPLEGLIRAPTDAERIAFATHKKLALTKNSQNSRYANTSAEVTG
FT                   GLFGCVPKNNFRQDRC"
XX
SQ   Sequence 946 BP; 273 A; 218 C; 231 G; 224 T; 0 other;

ab004803 Length: 946  16-JAN-2009  Type: N  Check: 9828  ..

       1  ttcacagctt ttgaaattga tattatggct ggagatgaag aaaccctcag
      51  tgagatacgg aagctaccca ccagggaccc tgctaaaaac cctgagagcg
     101  aacgcagcaa ggccgtgaac gatgttgata tcatggaacg cgagggtttt
     151  gaagccgtgc tacggcggag tgaaagtaga ttcaacagac ttaaggagaa
     201  atggctggct gagctctcga gtgttaatgt gactaattgc ggctgggaat
     251  caggcaggcc caaagctcaa attgcggaca atttaaaagg ggatgcttca
     301  aatatcttca ctcgcccttc catggatgcg ctattggtgc ggaattacgc
     351  ccctgaaagt aacaatttag ctaccgccga agaattggct aaaatctccg
     401  ccaaagtgca agctctgggg gccccagaag aatgcttagc tgaagtcttt
     451  tgggacattt gcatgtactg cactacggcg ggtagttcgc ccaatgtaaa
     501  cccaaaaggg acgatttctg tcggcggaaa agttgtcact agagatatgg
     551  tcgtggccgt cattaaggag tactctacgc ttcgccaagt ctgtcgctgc
     601  tacgcgcccg tcgtctggaa ttatatgcta ttgaacgaac aaccgccagc
     651  taattgggac gctaaaggat tcacagaaaa tacaaaatat gccgctttcg
     701  acacttttga cgcagtaact aaccaagccg ctattcaacc tcttgaaggt
     751  ctaataagag cacccactga cgctgagcgc atagcttttg ctactcacaa
     801  gaaattggcc ttaaccaaaa actcccaaaa ctcacgttac gctaatacgt
     851  cggctgaagt cactggtggt ctcttcggtt gtgtgcctaa aaacaatttc
     901  cggcaggatc gatgttgata aagcaaagaa catatcgtag gttact