Sequence of DPV Leek yellow stripe virus

Leek yellow stripe virus CP gene for polyprotein (viral coat protein), partial cds, clone: Gchi3.

ACC No: AB005610

Dated: 2009-01-18 | Length: 1678 | CRC: 974000379

                
ID   AB005610; SV 1; linear; genomic RNA; STD; VRL; 1678 BP.
XX
AC   AB005610;
XX
DT   11-FEB-1998 (Rel. 54, Created)
DT   18-JAN-2009 (Rel. 99, Last updated, Version 5)
XX
DE   Leek yellow stripe virus CP gene for polyprotein (viral coat protein),
DE   partial cds, clone: Gchi3.
XX
KW   .
XX
OS   Leek yellow stripe virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1678
RA   Sumi S.;
RT   ;
RL   Submitted (08-JUL-1997) to the EMBL/GenBank/DDBJ databases.
RL   Contact:Shin-ichiro Sumi Wakunaga Pharmaceutical Co., Ltd., Institute for
RL   Biotechnology Research; 1624 Shimokotachi, Koda-Cho, Takata-Gun, Hiroshima
RL   739-11, Japan
XX
RN   [2]
RA   Tsuneyoshi T., Matsumi T., Natsuaki K.T., Sumi S.;
RT   "Nucleotide sequence analysis of virus isolates indicates the presence of
RT   three potyvirus species in Allium plants";
RL   Arch. Virol. 143:97-113(1998).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1678
FT                   /organism="Leek yellow stripe virus"
FT                   /mol_type="genomic RNA"
FT                   /isolation_source="garlic"
FT                   /clone="Gchi3"
FT                   /note="synonym: leek yellow stripe potyvirus"
FT                   /db_xref="taxon:42004"
FT   CDS             <1. .1084
FT                   /codon_start=2
FT                   /transl_table=1
FT                   /gene="CP"
FT                   /product="polyprotein"
FT                   /db_xref="GOA:O55521"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:O55521"
FT                   /protein_id="BAA24796.1"
FT                   /translation="YPDLLDRIRKFYCWILEQAPYSELSAVGKAPFISEMALRNLYTDY
FT                   KATEVELARYLELYANDTTIEDIFEYQAGEELDAGTQASKSSKSNTDKSIEQRNPAPTQ
FT                   TSTGGRKDDDNSDLSSSKDRDVNVGTTGTFSVPRIKQITQKGLSIPMDEGKSVLNLDHL
FT                   LQYKPSQLCISNTRATRAQFKTWRSKLQDEYGVSDSDMSVILNGLVVWCIENGTSPNVN
FT                   GVWTMMDGEEQVEFPLRPVVEHAQPTLRQIMTHFSALAEAYIEMRNSEQAYMPRYGLQR
FT                   NLTDMSLARYAFDFYEVTSRTPVRAREAHAQMKAAALRNSRPRLFGLDGNVTTMDEDTE
FT                   RHTAHDVNARMHHLDGAHMQ"
FT   mat_peptide     218. .1081
FT                   /gene="CP"
FT                   /product="viral coat protein"
XX
SQ   Sequence 1678 BP; 520 A; 336 C; 391 G; 431 T; 0 other;

ab005610 Length: 1678  18-JAN-2009  Type: N  Check: 4015  ..

       1  ttacccagat cttctcgacc gaattcgtaa attctattgt tggatcctcg
      51  aacaagcgcc gtatagcgag ttgagtgccg ttggaaaggc gccattcatc
     101  tctgagatgg ccttgcgcaa cttgtacact gactataaag ctacagaagt
     151  tgagttagca aggtaccttg agctgtatgc taatgataca accatagaag
     201  atatttttga gtaccaagca ggtgaagaac tagatgcagg cacacaagcg
     251  agcaagagct caaagagtaa cacagataaa tctatagagc aacgaaatcc
     301  agcaccaacg caaactagta caggtgggag gaaggatgat gacaactcgg
     351  acttaagctc aagtaaagat agagatgtaa atgtaggcac cacagggacg
     401  ttcagtgtgc caagaataaa acaaatcaca caaaagggct tatcaattcc
     451  gatggatgaa ggtaaatcag ttcttaatct ggatcacctc ctacaatata
     501  agcctagtca actatgtata tcaaatacta gagccactag agcacaattc
     551  aaaacttgga gatctaaact acaggatgaa tatggagttt cagatagtga
     601  tatgagtgtc attttgaacg gtttagtggt gtggtgtatt gagaatggca
     651  catcaccaaa cgtaaacgga gtttggacga tgatggacgg tgaagaacaa
     701  gttgaatttc ctttgcggcc agttgtcgaa cacgcacaac caaccctacg
     751  acaaataatg acacatttct cagcgcttgc agaagcctat attgagatga
     801  gaaattcgga acaagcgtac atgcccagat acggattgca gagaaatctc
     851  acagatatga gtctcgcacg gtatgcattt gacttttatg aagtcacgtc
     901  aagaacacca gttagagcgc gcgaggctca cgcacagatg aaagcagcag
     951  ccttgcggaa ttcaaggcca aggctgtttg gactagacgg taacgtcaca
    1001  accatggatg aggacacgga gaggcacaca gcacatgacg tgaatgcacg
    1051  gatgcaccat ctcgatggtg cgcatatgca gtgatgtttc ggtttataac
    1101  cggttatgga cttccactta aaaagtctcg agtgccaaac ttgtattttg
    1151  gctagtttag tgaagctatg attcactcgt tcaaggcagt ttctactcta
    1201  aggatgactt gagaattaat agctctcaat gccggccaca gtggtggcta
    1251  ccaagatcca acacttggtt tgaagttgat cagctgaaga tctatcctaa
    1301  gtacggtttt gtaaagaagg tgagttcaat tgttaaggat agtaagtctg
    1351  aagcctttat ggtgtatacg cagcctgaat tttgataccc cacctttacc
    1401  ctacgacgga gtgctacttt aaagactagc taggattgag accgaattct
    1451  cacgtgctgg catggccagc ggctaatcac ctaatgattg gttgaccacc
    1501  ttatagtcaa tttggaaacc cgtagtatcc tatccttacc taatatcgta
    1551  agttttattt actggtgtag tgtggtgcga ccaccttata aacactttga
    1601  atattaggat cgagctgttc atttgaagac actaagagtg gttaaccatg
    1651  tgtgtgttct tatgttgcag taagagac