Sequence of DPV Leek yellow stripe virus

Leek yellow stripe virus CP gene for polyprotein (viral coat protein), partial cds, clone: Guae-D3.

ACC No: AB005611

Dated: 2009-01-18 | Length: 1678 | CRC: 941353775

                
ID   AB005611; SV 1; linear; genomic RNA; STD; VRL; 1678 BP.
XX
AC   AB005611;
XX
DT   11-FEB-1998 (Rel. 54, Created)
DT   18-JAN-2009 (Rel. 99, Last updated, Version 5)
XX
DE   Leek yellow stripe virus CP gene for polyprotein (viral coat protein),
DE   partial cds, clone: Guae-D3.
XX
KW   .
XX
OS   Leek yellow stripe virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1678
RA   Sumi S.;
RT   ;
RL   Submitted (08-JUL-1997) to the EMBL/GenBank/DDBJ databases.
RL   Contact:Shin-ichiro Sumi Wakunaga Pharmaceutical Co., Ltd., Institute for
RL   Biotechnology Research; 1624 Shimokotachi, Koda-Cho, Takata-Gun, Hiroshima
RL   739-11, Japan
XX
RN   [2]
RA   Tsuneyoshi T., Matsumi T., Natsuaki K.T., Sumi S.;
RT   "Nucleotide sequence analysis of virus isolates indicates the presence of
RT   three potyvirus species in Allium plants";
RL   Arch. Virol. 143:97-113(1998).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1678
FT                   /organism="Leek yellow stripe virus"
FT                   /mol_type="genomic RNA"
FT                   /isolation_source="garlic"
FT                   /clone="Guae-D3"
FT                   /note="synonym: leek yellow stripe potyvirus"
FT                   /db_xref="taxon:42004"
FT   CDS             <1. .1087
FT                   /codon_start=2
FT                   /transl_table=1
FT                   /gene="CP"
FT                   /product="polyprotein"
FT                   /note="C-terminal region"
FT                   /db_xref="GOA:O55522"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:O55522"
FT                   /protein_id="BAA24797.1"
FT                   /translation="YPDLLDRIRKFYCWILEQAPYSELSTVGKAPFISEAALRNLYTDC
FT                   KATESELARYLELYDGNTPTEEIFEYQAGDELDAGTQVNRSQKASADKSIEQRNPLVSQ
FT                   ASTHGNKDVSTSSEASMGKDRDVNVGTTGTFSVPRIKQISRKGLAIPMDGGKSILNLDH
FT                   LLQYKPSQLYISNTRATRAQFASWRTRLQEEYGVTDGEMSIILNGLMVWCIENGTSPNI
FT                   NGVWTMMDGEEQVEFPLRPVVEHAQPTLRQIMAHFSALAEAYIEMRNAEQAYMPRYGLQ
FT                   RNLTDMSLARYAFDFYEVTSRTPVRAREAHAQMKAAALRNARPRLFGLDGNVTTTDEDT
FT                   ERHTAHDVNARMHHLDGAHMQ"
FT   mat_peptide     218. .1084
FT                   /gene="CP"
FT                   /product="viral coat protein"
XX
SQ   Sequence 1678 BP; 538 A; 332 C; 383 G; 425 T; 0 other;

ab005611 Length: 1678  18-JAN-2009  Type: N  Check: 6645  ..

       1  ctatccagac cttctggacc ggattcgaaa gttttactgt tggattcttg
      51  agcaagcccc atatagtgaa ttaagcacag taggcaaagc accatttatt
     101  tctgaagcag ccttacgaaa cctatacact gattgcaagg caacggagtc
     151  ggaattagca agatatcttg aactttatga tggtaacaca cctacagagg
     201  agatattcga ataccaagca ggtgatgaac tcgacgcagg gacgcaggtg
     251  aatagaagcc aaaaagctag tgctgataag tctatagaac aacgaaaccc
     301  attagtatca caagcaagta cacatggaaa taaagatgtt agcactagtt
     351  cagaggcaag catgggcaaa gatagagatg tcaatgttgg caccacagga
     401  acatttagtg tgccacgaat aaagcaaatt tcgagaaaag gtttagcgat
     451  tccaatggat ggaggaaagt caatacttaa cttagaccac ctcttacaat
     501  ataagcctag tcaattatac atatcaaaca cgagagccac tagagcgcaa
     551  ttcgcatctt ggagaacaag actacaggag gaatatggtg tcactgatgg
     601  cgagatgagc attattctaa atggcctaat ggtatggtgt atcgaaaatg
     651  ggacttcacc aaatataaat ggagtttgga caatgatgga tggcgaggag
     701  caagtcgaat tccctttacg accagttgta gaacatgcac aaccgacctt
     751  gcgacaaata atggcgcatt tctcagcact tgcagaagca tatattgaga
     801  tgcgaaatgc ggaacaagct tatatgccaa gatatggact acaaaggaat
     851  cttacagaca tgagtctcgc acggtacgca tttgactttt atgaagtcac
     901  atcaagaaca ccagttagag cgcgcgaggc ccatgcacaa atgaaagcag
     951  cagccttacg gaacgcaagg ccaaggctgt ttggactaga cggtaacgtc
    1001  acaaccacgg atgaggacac ggagaggcac acagcacatg acgtgaatgc
    1051  acggatgcac catcttgatg gtgcacatat gcagtgatgt ttcggttaat
    1101  aaccggttat gggcttccac gtaaaaagtc ccgagtgcca aacttgtatt
    1151  ttggctagtg tagtgagact atgattcact cgttcaaggc agtttctact
    1201  ttaaggatga cttgagaatt aatagttctc aatgccggtt acattggtag
    1251  ccaccaagag tcaacacttg gtttgaagct aatcatctga agatttatcc
    1301  tgagtacggt tttgtaaaga aggtgaattc aatcgataag gatagtaagt
    1351  ctgaaacctt tatggtgtat aagcagcctg atttttgata ccccaccttt
    1401  accctacaat ggagtgctac tttaaagact agctaggatt gagaccgaat
    1451  tctcacgact gcatggccag cggttgatca cctaacgatt agttgacaac
    1501  ttcatagtca atatggaacc cgtagtatcc tatccttacc taatatcgta
    1551  agttttattt actggtgtag cgtggtttac ccaccttata aacactttga
    1601  atattaggat cgagctgttc atttgaagac actaagagtg gttgaccatg
    1651  tgtgtgttcc tatgttgcag taagagac